Wall clock time and date at job start Tue Mar 31 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28720 * 125.31584 * 2 1 4 4 N 1.28989 * 108.98512 * 179.68773 * 3 2 1 5 5 C 1.34191 * 107.24967 * 0.44017 * 4 3 2 6 6 C 1.48006 * 126.69859 * 179.83491 * 5 4 3 7 7 O 1.21531 * 120.00089 * 179.68683 * 6 5 4 8 8 N 1.34779 * 119.99862 * 359.68516 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.08996 * 112.85005 * 316.18669 * 10 9 8 12 12 C 1.53775 * 113.61825 * 87.50296 * 10 9 8 13 13 C 1.53776 * 87.08393 * 139.97637 * 12 10 9 14 14 H 1.09001 * 113.61681 * 220.01520 * 13 12 10 15 15 N 1.46505 * 113.68717 * 89.12583 * 13 12 10 16 16 C 1.36939 * 119.99600 * 107.46936 * 15 13 12 17 17 H 1.07997 * 120.00167 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99827 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47348 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47317 * 119.99875 * 20 18 16 23 23 H 1.48509 * 109.46767 * 239.99629 * 20 18 16 24 24 C 1.53774 * 87.08069 * 334.56900 * 13 12 10 25 25 N 1.28870 * 125.32064 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47378 * 270.03535 * 1 2 3 27 27 H 1.09000 * 109.47750 * 30.04030 * 1 2 3 28 28 H 1.09007 * 109.47344 * 150.03593 * 1 2 3 29 29 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 31 31 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 32 32 H 1.09005 * 113.61502 * 254.53312 * 12 10 9 33 33 H 1.08999 * 113.61676 * 25.42734 * 12 10 9 34 34 H 0.97000 * 120.00254 * 287.46324 * 15 13 12 35 35 H 0.97000 * 120.00227 * 179.97438 * 19 18 16 36 36 H 1.09006 * 113.61277 * 270.88016 * 24 13 12 37 37 H 1.09006 * 113.61790 * 139.97929 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6876 0.0066 5 6 3.4685 -0.6541 0.0011 6 6 4.6692 -1.5194 0.0020 7 8 4.5469 -2.7285 0.0022 8 7 5.8984 -0.9664 0.0025 9 6 7.0869 -1.8229 0.0027 10 6 8.3440 -0.9507 0.0039 11 1 8.2790 -0.1136 -0.6911 12 6 8.8143 -0.5498 1.4120 13 6 10.2502 -0.7833 0.9134 14 1 10.8935 -1.2694 1.6469 15 7 10.8657 0.4038 0.3148 16 6 11.8519 1.0759 0.9862 17 1 12.1756 0.7312 1.9572 18 6 12.4348 2.2010 0.4192 19 7 12.0399 2.6214 -0.7638 20 14 13.7795 3.1184 1.3354 21 1 14.0386 2.4486 2.6352 22 1 15.0218 3.1181 0.5217 23 1 13.3469 4.5182 1.5779 24 6 9.6503 -1.7528 -0.1185 25 7 2.2101 -1.0515 0.0005 26 1 -0.3634 0.0006 1.0276 27 1 -0.3634 0.8896 -0.5144 28 1 -0.3634 -0.8904 -0.5133 29 1 5.9960 -0.0013 0.0019 30 1 7.0816 -2.4522 -0.8873 31 1 7.0809 -2.4523 0.8927 32 1 8.6029 0.4895 1.6635 33 1 8.5039 -1.2463 2.1909 34 1 10.5747 0.7135 -0.5572 35 1 12.4469 3.4077 -1.1599 36 1 9.5684 -2.7783 0.2419 37 1 10.1139 -1.6848 -1.1027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086450190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:17 Heat of formation + Delta-G solvation = 130.440223 kcal Electronic energy + Delta-G solvation = -20821.711326 eV Core-core repulsion = 17445.764315 eV Total energy + Delta-G solvation = -3375.947011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.71797 -39.83065 -38.48754 -35.60120 -34.78966 -33.48429 -33.20869 -30.32160 -29.37871 -27.59452 -25.22064 -25.02580 -23.71020 -23.24415 -21.76853 -21.14906 -18.92994 -18.15707 -17.94803 -17.40294 -16.98352 -16.15516 -15.48549 -14.96623 -14.56883 -14.40182 -14.22220 -13.95911 -13.84930 -13.59721 -13.26385 -12.88959 -12.47856 -12.30421 -11.91435 -11.46664 -11.43669 -11.41906 -11.04063 -10.85613 -10.71341 -10.61425 -10.46376 -10.12243 -9.90082 -9.68442 -9.51101 -9.13204 -8.88063 -6.98828 -5.79534 -3.08531 0.67154 1.18387 1.40179 2.66733 2.91920 3.42815 3.48719 3.50864 3.72178 3.83658 4.33674 4.50938 4.56952 4.64808 4.92203 5.03194 5.05435 5.21564 5.28723 5.46365 5.60292 5.60776 5.67988 5.82312 5.94023 6.07263 6.21359 6.26322 6.38407 6.58751 6.76866 6.89139 7.05499 7.24855 7.70852 7.79822 7.94540 8.39631 9.50417 10.07988 10.42050 11.42953 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002964 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.789383 B = 9445.015698 C =10228.905940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.136 5.136 3 N -0.054 5.054 4 N -0.249 5.249 5 C 0.131 3.869 6 C 0.613 3.387 7 O -0.514 6.514 8 N -0.697 5.697 9 C 0.131 3.869 10 C -0.121 4.121 11 H 0.096 0.904 12 C -0.170 4.170 13 C 0.167 3.833 14 H 0.063 0.937 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.147 4.147 25 N -0.250 5.250 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.414 0.586 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.848 -6.898 0.973 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.049 5.049 3 N -0.048 5.048 4 N -0.124 5.124 5 C -0.153 4.153 6 C 0.393 3.607 7 O -0.386 6.386 8 N -0.349 5.349 9 C 0.009 3.991 10 C -0.140 4.140 11 H 0.114 0.886 12 C -0.211 4.211 13 C 0.055 3.945 14 H 0.081 0.919 15 N -0.344 5.344 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.186 4.186 25 N -0.104 5.104 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.122 -7.184 1.087 24.237 hybrid contribution 0.592 0.838 0.134 1.035 sum -22.530 -6.345 1.221 23.439 Atomic orbital electron populations 1.22560 0.68435 1.07277 1.06478 1.50278 1.11170 1.00699 1.42795 1.78968 0.96371 1.13939 1.15536 1.76195 1.10050 1.10078 1.16113 1.25386 0.93237 0.90348 1.06305 1.16109 0.80833 0.85672 0.78135 1.90847 1.85650 1.12776 1.49337 1.45822 1.04428 1.11945 1.72687 1.21666 0.82189 0.92864 1.02380 1.22747 0.92141 0.98963 1.00142 0.88560 1.23912 1.01403 1.01377 0.94377 1.21048 0.91256 0.88454 0.93739 0.91918 1.42183 1.42736 1.28235 1.21282 1.19332 1.11133 1.06189 1.00595 0.90937 1.24767 1.00342 0.98820 0.96994 1.69668 1.45265 1.26605 1.16456 0.86105 0.81562 0.79656 0.78785 1.20504 1.21851 1.21845 1.23450 0.95181 0.98452 1.01553 1.75079 1.02468 1.14365 1.18463 0.87584 0.86504 0.86743 0.75003 0.91083 0.90868 0.91325 0.91306 0.78079 0.93484 0.90359 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.24 11.62 59.85 0.70 0.94 16 2 N -0.14 -1.27 4.39 -16.65 -0.07 -1.35 16 3 N -0.05 -0.63 13.23 60.35 0.80 0.17 16 4 N -0.25 -3.35 12.26 32.10 0.39 -2.95 16 5 C 0.13 1.80 8.14 -156.24 -1.27 0.53 16 6 C 0.61 8.89 7.84 -12.25 -0.10 8.80 16 7 O -0.51 -8.74 17.10 5.34 0.09 -8.65 16 8 N -0.70 -9.11 5.55 -61.20 -0.34 -9.45 16 9 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 10 C -0.12 -1.77 3.63 -89.81 -0.33 -2.10 16 11 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 12 C -0.17 -2.78 7.43 -25.92 -0.19 -2.98 16 13 C 0.17 3.21 4.56 -67.12 -0.31 2.90 16 14 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 15 N -0.71 -17.26 5.31 -52.64 -0.28 -17.54 16 16 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 25 N -0.25 -3.10 12.17 32.11 0.39 -2.71 16 26 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.11 0.13 8.14 -51.92 -0.42 -0.30 16 29 H 0.41 5.12 8.22 -40.82 -0.34 4.78 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 34 H 0.39 9.96 7.90 -40.82 -0.32 9.64 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -34.31 326.73 -5.17 -39.48 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.82 Total: 7.89 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.96 Total: 0.08 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 1.61 Total: -60.93 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.31 -5.17 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086450190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.923 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds