Wall clock time and date at job start Tue Mar 31 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.28728 * 125.32237 * 2 1 4 4 N 1.28975 * 108.98973 * 180.02562 * 3 2 1 5 5 C 1.34186 * 107.25530 * 359.97438 * 4 3 2 6 6 C 1.48006 * 126.70118 * 179.97438 * 5 4 3 7 7 O 1.21538 * 119.99972 * 179.74879 * 6 5 4 8 8 N 1.34777 * 119.99887 * 0.03222 * 6 5 4 9 9 C 1.46496 * 119.99867 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47030 * 179.97438 * 9 8 6 11 11 C 1.53784 * 113.61168 * 274.13486 * 10 9 8 12 12 C 1.53964 * 87.01833 * 220.04661 * 11 10 9 13 13 N 1.46497 * 113.53850 * 270.81174 * 12 11 10 14 14 C 1.36937 * 120.00302 * 252.49810 * 13 12 11 15 15 H 1.08004 * 119.99707 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00244 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99840 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47321 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46739 * 120.00033 * 18 16 14 21 21 H 1.48499 * 109.47190 * 240.00103 * 18 16 14 22 22 C 1.53780 * 87.10977 * 25.36403 * 12 11 10 23 23 N 1.28874 * 125.32101 * 180.28976 * 2 1 3 24 24 H 1.08998 * 109.47549 * 89.97806 * 1 2 3 25 25 H 1.09003 * 109.47252 * 209.97613 * 1 2 3 26 26 H 1.09002 * 109.47400 * 329.97732 * 1 2 3 27 27 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47157 * 299.99079 * 9 8 6 29 29 H 1.09004 * 109.47714 * 59.99650 * 9 8 6 30 30 H 1.09000 * 112.85411 * 45.32884 * 10 9 8 31 31 H 1.08999 * 113.61544 * 334.56400 * 11 10 9 32 32 H 1.09000 * 113.61051 * 105.47287 * 11 10 9 33 33 H 1.08998 * 113.74262 * 139.94412 * 12 11 10 34 34 H 0.97002 * 119.99718 * 72.49129 * 13 12 11 35 35 H 0.97000 * 119.99891 * 179.97438 * 17 16 14 36 36 H 1.09000 * 113.61183 * 220.09101 * 22 12 11 37 37 H 1.09001 * 113.61973 * 89.18855 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6876 -0.0005 5 6 3.4685 -0.6541 -0.0003 6 6 4.6692 -1.5194 -0.0013 7 8 4.5469 -2.7286 0.0036 8 7 5.8983 -0.9664 -0.0019 9 6 7.0868 -1.8229 -0.0023 10 6 8.3440 -0.9508 -0.0036 11 6 8.7912 -0.5169 -1.4095 12 6 10.2361 -0.7632 -0.9383 13 7 10.8592 0.4115 -0.3235 14 6 11.8350 1.0990 -0.9946 15 1 12.1455 0.7750 -1.9769 16 6 12.4259 2.2117 -0.4118 17 7 12.0478 2.6063 0.7856 18 14 13.7575 3.1491 -1.3270 19 1 13.9980 2.5076 -2.6445 20 1 13.3214 4.5536 -1.5331 21 1 15.0111 3.1317 -0.5311 22 6 9.6519 -1.7552 0.0812 23 7 2.2100 -1.0515 -0.0053 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 5.9960 -0.0014 -0.0021 28 1 7.0816 -2.4520 0.8879 29 1 7.0809 -2.4524 -0.8922 30 1 8.2898 -0.1289 0.7104 31 1 8.4679 -1.1951 -2.1993 32 1 8.5760 0.5280 -1.6330 33 1 10.8691 -1.2329 -1.6911 34 1 10.5805 0.7023 0.5589 35 1 12.4609 3.3836 1.1930 36 1 10.1305 -1.7085 1.0594 37 1 9.5643 -2.7726 -0.3001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091189452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:02 Heat of formation + Delta-G solvation = 103.534098 kcal Electronic energy + Delta-G solvation = -20826.733698 eV Core-core repulsion = 17449.619950 eV Total energy + Delta-G solvation = -3377.113748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.58421 -40.98938 -39.83960 -36.41346 -36.06476 -34.99007 -34.37952 -32.11009 -30.16834 -28.72622 -26.40773 -26.35210 -25.47338 -24.08988 -23.08213 -22.19250 -20.12918 -19.43501 -19.15980 -18.75966 -17.93186 -17.29607 -16.70489 -16.52586 -15.93245 -15.77029 -15.29543 -15.14394 -14.81630 -14.61492 -14.29917 -14.12691 -13.74375 -13.26101 -13.19577 -12.93544 -12.90724 -12.65241 -12.38677 -12.28338 -12.10985 -12.03859 -11.81642 -11.51969 -11.46326 -11.35545 -10.92363 -10.79347 -10.23873 -8.97138 -7.93518 -5.21365 -0.21264 0.21321 0.78811 1.49223 1.49475 1.59565 1.72106 1.84511 2.57415 2.77048 3.04042 3.39466 3.74453 3.80503 3.85566 3.97965 4.05032 4.16470 4.22568 4.35772 4.43660 4.49289 4.60255 4.73477 4.75563 4.94850 4.97765 5.02772 5.08390 5.19626 5.38890 5.45598 5.55971 5.70202 6.17786 6.30651 6.77869 6.98787 7.35474 8.13608 8.35124 9.30070 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.002968 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.218224 B = 9430.302150 C =10214.345547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.114 5.114 3 N -0.062 5.062 4 N -0.270 5.270 5 C 0.115 3.885 6 C 0.617 3.383 7 O -0.543 6.543 8 N -0.690 5.690 9 C 0.139 3.861 10 C -0.106 4.106 11 C -0.156 4.156 12 C 0.143 3.857 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.295 1.295 21 H -0.294 1.294 22 C -0.130 4.130 23 N -0.261 5.261 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.142 0.858 27 H 0.417 0.583 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.379 -7.743 -1.930 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.030 5.030 3 N -0.055 5.055 4 N -0.144 5.144 5 C -0.169 4.169 6 C 0.397 3.603 7 O -0.418 6.418 8 N -0.342 5.342 9 C 0.017 3.983 10 C -0.125 4.125 11 C -0.197 4.197 12 C 0.033 3.967 13 N -0.359 5.359 14 C -0.371 4.371 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.221 1.221 22 C -0.169 4.169 23 N -0.117 5.117 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.160 0.840 27 H 0.254 0.746 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.678 -8.043 -2.079 26.039 hybrid contribution 0.890 1.056 0.110 1.385 sum -23.788 -6.988 -1.969 24.871 Atomic orbital electron populations 1.23285 0.64862 1.09542 1.08781 1.50855 1.12782 0.99452 1.39882 1.78886 0.96116 1.14515 1.16026 1.76147 1.11197 1.10053 1.17031 1.25196 0.93458 0.90444 1.07786 1.16167 0.81256 0.85372 0.77514 1.90824 1.86125 1.13876 1.50954 1.45776 1.04249 1.12136 1.72006 1.21577 0.81148 0.92385 1.03218 1.22530 0.92901 0.98493 0.98528 1.23783 0.99094 1.00685 0.96128 1.21438 0.92226 0.87886 0.95176 1.42332 1.43584 1.30553 1.19411 1.19709 1.11423 1.06289 0.99669 0.90510 1.25546 1.03096 1.00407 0.97866 1.69816 1.47043 1.28279 1.16884 0.85097 0.78631 0.78095 0.78095 1.19006 1.22239 1.22149 1.23336 0.94478 0.99157 0.99977 1.75043 1.02321 1.15470 1.18829 0.85134 0.84854 0.83951 0.74633 0.90348 0.89918 0.90050 0.88693 0.93553 0.92022 0.79365 0.94075 0.92211 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.62 127.77 1.49 1.66 16 2 N -0.11 -1.93 4.39 -206.60 -0.91 -2.84 16 3 N -0.06 -1.36 13.23 37.02 0.49 -0.87 16 4 N -0.27 -7.12 12.26 -52.36 -0.64 -7.77 16 5 C 0.11 3.08 8.14 137.15 1.12 4.19 16 6 C 0.62 17.48 7.84 86.83 0.68 18.16 16 7 O -0.54 -18.05 17.10 -3.84 -0.07 -18.12 16 8 N -0.69 -17.42 5.55 -465.81 -2.59 -20.00 16 9 C 0.14 3.36 5.50 86.38 0.47 3.83 16 10 C -0.11 -2.96 3.62 -10.26 -0.04 -3.00 16 11 C -0.16 -4.93 7.44 31.18 0.23 -4.70 16 12 C 0.14 5.35 4.57 45.58 0.21 5.56 16 13 N -0.72 -35.59 5.31 -320.16 -1.70 -37.29 16 14 C -0.24 -13.15 9.97 84.03 0.84 -12.31 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 18 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 C -0.13 -3.82 7.39 31.12 0.23 -3.59 16 23 N -0.26 -6.17 12.17 -52.31 -0.64 -6.81 16 24 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.42 10.15 8.22 -92.71 -0.76 9.39 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.09 2.51 7.92 -2.39 -0.02 2.50 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 34 H 0.37 19.83 7.90 -92.71 -0.73 19.10 16 35 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.11 2.56 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -74.87 326.77 1.58 -73.29 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.38 Total: 25.27 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.69 Total: 5.87 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -5.70 Total: -134.46 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.07 Total: -18.12 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -74.87 1.58 -73.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091189452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.823 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds