Wall clock time and date at job start Tue Mar 31 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47376 * 179.97438 * 4 3 2 6 6 C 1.37098 * 120.00120 * 270.00334 * 5 4 3 7 7 H 1.07995 * 120.00415 * 140.85730 * 6 5 4 8 8 C 1.38958 * 119.99663 * 320.85085 * 6 5 4 9 9 N 1.31404 * 120.00077 * 342.72645 * 8 6 5 10 10 Si 1.86799 * 119.99703 * 162.72171 * 8 6 5 11 11 H 1.48498 * 109.47063 * 59.99864 * 10 8 6 12 12 H 1.48496 * 109.47170 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47094 * 300.00390 * 10 8 6 14 14 C 1.34777 * 119.99785 * 90.00062 * 5 4 3 15 15 O 1.21292 * 120.00424 * 5.52320 * 14 5 4 16 16 C 1.50703 * 119.99653 * 185.52051 * 14 5 4 17 17 C 1.50703 * 109.46906 * 174.26125 * 16 14 5 18 18 C 1.38234 * 119.58541 * 125.00026 * 17 16 14 19 19 C 1.38596 * 119.18849 * 180.02562 * 18 17 16 20 20 C 1.38873 * 118.39719 * 0.25465 * 19 18 17 21 21 F 1.35100 * 120.44273 * 179.74632 * 20 19 18 22 22 C 1.38428 * 119.11551 * 359.52283 * 20 19 18 23 23 N 1.31841 * 119.59105 * 305.02384 * 17 16 14 24 24 H 1.09005 * 109.46656 * 60.00276 * 1 2 3 25 25 H 1.09000 * 109.47750 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47497 * 300.00556 * 1 2 3 27 27 H 1.09004 * 109.46942 * 239.99469 * 2 1 3 28 28 H 1.08999 * 109.46898 * 120.00085 * 2 1 3 29 29 H 1.09004 * 109.47201 * 59.99462 * 3 2 1 30 30 H 1.08999 * 109.47231 * 299.99881 * 3 2 1 31 31 H 1.09004 * 109.46596 * 59.99635 * 4 3 2 32 32 H 1.08999 * 109.47170 * 300.00297 * 4 3 2 33 33 H 0.97001 * 119.99677 * 185.01995 * 9 8 6 34 34 H 1.09003 * 109.47140 * 54.26749 * 16 14 5 35 35 H 1.08994 * 109.47366 * 294.26434 * 16 14 5 36 36 H 1.08004 * 120.40940 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.80041 * 179.97438 * 19 18 17 38 38 H 1.07990 * 119.63908 * 180.21126 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2873 3.4693 -1.1876 7 1 4.0302 4.5128 -1.2933 8 6 4.8504 2.7808 -2.2552 9 7 5.4699 1.6406 -2.0485 10 14 4.7265 3.4764 -3.9845 11 1 5.3819 4.8081 -4.0305 12 1 5.4018 2.5586 -4.9367 13 1 3.2967 3.6152 -4.3610 14 6 4.2825 3.4596 1.1670 15 8 4.1767 2.8588 2.2153 16 6 4.6648 4.9174 1.1693 17 6 4.7194 5.4201 2.5889 18 6 5.8720 6.0244 3.0551 19 6 5.9134 6.4832 4.3622 20 6 4.7886 6.3113 5.1585 21 9 4.7856 6.7382 6.4402 22 6 3.6691 5.7008 4.6200 23 7 3.6675 5.2777 3.3709 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9336 0.9284 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.9255 1.1965 -2.7806 34 1 3.9235 5.4883 0.6100 35 1 5.6429 5.0373 0.7035 36 1 6.7298 6.1376 2.4087 37 1 6.8005 6.9588 4.7535 38 1 2.7886 5.5659 5.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142018084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:21 Heat of formation + Delta-G solvation = -72.908102 kcal Electronic energy + Delta-G solvation = -21616.166111 eV Core-core repulsion = 18179.188542 eV Total energy + Delta-G solvation = -3436.977569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96427 -41.30861 -40.09142 -37.10284 -35.52964 -33.62736 -33.44128 -33.28840 -30.33370 -28.51729 -26.73720 -24.97489 -24.51358 -23.10778 -21.92911 -20.95614 -18.85674 -18.52057 -18.21561 -17.77198 -17.00137 -16.76993 -16.42709 -16.09059 -15.89931 -15.77490 -14.92577 -14.88761 -14.78115 -14.40334 -13.93214 -13.89864 -13.73600 -13.55761 -13.15095 -13.01127 -12.81325 -12.76627 -12.58498 -12.13601 -12.01546 -11.93825 -11.79486 -11.41684 -10.97822 -10.88982 -10.50683 -10.30462 -9.75452 -9.34405 -8.22309 -6.02946 -0.07928 0.19733 1.47844 1.54102 1.61313 2.11328 2.36253 2.59139 3.02224 3.04307 3.19956 3.38425 3.72272 3.81119 3.95337 4.08286 4.17197 4.31358 4.36370 4.49892 4.61389 4.66157 4.76521 4.84215 4.86977 4.88835 4.90420 5.00247 5.05414 5.10413 5.18860 5.37068 5.44786 5.49966 5.62593 5.68252 6.13335 6.48947 6.97514 7.18871 7.66365 8.11451 8.80201 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.005023 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.822894 B = 5572.597841 C = 6936.369439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.116 3.884 5 N -0.455 5.455 6 C -0.355 4.355 7 H 0.101 0.899 8 C 0.005 3.995 9 N -0.898 5.898 10 Si 0.983 3.017 11 H -0.258 1.258 12 H -0.287 1.287 13 H -0.270 1.270 14 C 0.469 3.531 15 O -0.626 6.626 16 C -0.067 4.067 17 C 0.125 3.875 18 C -0.136 4.136 19 C -0.100 4.100 20 C 0.030 3.970 21 F -0.133 7.133 22 C 0.065 3.935 23 N -0.469 5.469 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.271 0.729 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 7.510 4.529 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.008 4.008 5 N -0.173 5.173 6 C -0.482 4.482 7 H 0.119 0.881 8 C -0.197 4.197 9 N -0.536 5.536 10 Si 0.807 3.193 11 H -0.183 1.183 12 H -0.213 1.213 13 H -0.195 1.195 14 C 0.258 3.742 15 O -0.513 6.513 16 C -0.107 4.107 17 C -0.012 4.012 18 C -0.156 4.156 19 C -0.126 4.126 20 C 0.009 3.991 21 F -0.112 7.112 22 C -0.094 4.094 23 N -0.178 5.178 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.191 0.809 37 H 0.199 0.801 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.038 6.634 4.600 8.326 hybrid contribution 0.766 0.337 -0.167 0.853 sum -1.272 6.971 4.433 8.358 Atomic orbital electron populations 1.21707 0.94118 1.02341 1.01760 1.21409 0.97143 0.95244 1.01592 1.21754 0.95639 0.97609 1.00147 1.21345 0.93034 0.85065 1.01366 1.43633 1.56417 1.12291 1.04944 1.19752 1.42194 0.97439 0.88809 0.88137 1.26219 0.93797 0.96090 1.03635 1.69929 1.31119 1.18362 1.34155 0.85137 0.78668 0.78494 0.76992 1.18260 1.21301 1.19520 1.20822 0.79628 0.90159 0.83553 1.90510 1.58223 1.69519 1.33088 1.20360 1.05436 0.93009 0.91898 1.21109 0.90228 0.94266 0.95646 1.22188 0.98966 0.98023 0.96399 1.21934 0.98434 0.98955 0.93284 1.18863 0.97410 1.02318 0.80511 1.91495 1.96992 1.87849 1.34816 1.23146 0.98354 0.95695 0.92232 1.67458 1.30659 1.14693 1.04970 0.92523 0.91042 0.93069 0.92000 0.92679 0.94631 0.92678 0.89091 0.95445 0.91901 0.87458 0.86162 0.80863 0.80097 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.12 -3.99 5.93 30.59 0.18 -3.81 16 3 C -0.11 -4.79 5.54 30.59 0.17 -4.62 16 4 C 0.12 5.76 5.04 86.38 0.44 6.20 16 5 N -0.45 -23.05 2.51 -635.54 -1.60 -24.65 16 6 C -0.35 -17.25 8.67 84.04 0.73 -16.53 16 7 H 0.10 4.50 6.96 -2.91 -0.02 4.48 16 8 C 0.01 0.26 5.05 84.93 0.43 0.69 16 9 N -0.90 -46.93 11.31 21.66 0.25 -46.68 16 10 Si 0.98 37.83 29.59 68.60 2.03 39.86 16 11 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 12 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 14 C 0.47 23.17 7.52 87.66 0.66 23.83 16 15 O -0.63 -34.69 15.02 -3.07 -0.05 -34.74 16 16 C -0.07 -2.58 4.82 29.10 0.14 -2.44 16 17 C 0.13 4.45 5.71 42.56 0.24 4.69 16 18 C -0.14 -3.65 9.71 22.35 0.22 -3.43 16 19 C -0.10 -2.33 10.16 22.51 0.23 -2.11 16 20 C 0.03 0.82 7.34 22.47 0.17 0.98 16 21 F -0.13 -3.33 17.28 44.97 0.78 -2.56 16 22 C 0.06 2.02 11.17 84.73 0.95 2.97 16 23 N -0.47 -17.95 9.35 -183.71 -1.72 -19.66 16 24 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.09 4.79 5.47 -2.39 -0.01 4.78 16 32 H 0.03 1.46 7.35 -2.39 -0.02 1.44 16 33 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 34 H 0.11 3.88 7.55 -2.39 -0.02 3.87 16 35 H 0.12 4.14 7.87 -2.39 -0.02 4.12 16 36 H 0.17 3.50 7.95 -2.91 -0.02 3.48 16 37 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.18 4.60 8.06 -2.92 -0.02 4.57 16 Total: -1.00 -65.31 327.55 6.01 -59.30 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.06 Total: 25.90 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.26 Total: 3.23 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.07 Total: -91.00 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.05 Total: -34.74 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -65.31 6.01 -59.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142018084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.606 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds