Wall clock time and date at job start Tue Mar 31 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.47030 * 180.02562 * 8 7 6 10 10 C 1.36943 * 119.99943 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99502 * 359.97438 * 10 9 8 12 12 C 1.38805 * 120.00174 * 179.97438 * 10 9 8 13 13 N 1.31625 * 119.99705 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47513 * 60.00247 * 14 12 10 16 16 H 1.48505 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47012 * 299.99958 * 14 12 10 18 18 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 19 19 C 1.38270 * 119.98585 * 239.99888 * 18 2 1 20 20 C 1.38225 * 120.05004 * 179.97438 * 19 18 2 21 21 C 1.38218 * 120.02723 * 0.02562 * 20 19 18 22 22 C 1.38440 * 119.97158 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.02450 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98628 * 59.72336 * 18 2 1 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 27 27 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 30 30 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 31 31 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 32 32 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 33 33 H 0.96999 * 120.00085 * 359.97438 * 9 8 7 34 34 H 0.97000 * 119.99481 * 180.02562 * 13 12 10 35 35 H 1.08003 * 119.97394 * 0.02562 * 19 18 2 36 36 H 1.08002 * 119.98694 * 180.02562 * 20 19 18 37 37 H 1.07995 * 120.01410 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.01648 * 0.02562 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 7 2.1715 -0.9110 -6.0962 10 6 1.8406 -0.4432 -7.3399 11 1 1.2199 0.4352 -7.4389 12 6 2.3027 -1.0978 -8.4733 13 7 3.0586 -2.1686 -8.3525 14 14 1.8508 -0.4600 -10.1698 15 1 2.3541 0.9281 -10.3272 16 1 2.4644 -1.3298 -11.2054 17 1 0.3740 -0.4718 -10.3259 18 6 2.0323 -0.7104 1.2304 19 6 2.8273 -0.0382 2.1404 20 6 3.2884 -0.6884 3.2697 21 6 2.9556 -2.0117 3.4902 22 6 2.1597 -2.6857 2.5798 23 9 1.8334 -3.9790 2.7946 24 6 1.6937 -2.0316 1.4516 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.1487 0.5387 -2.5435 29 1 3.2846 -0.9412 -3.6510 30 1 1.8308 -1.9683 -3.6506 31 1 0.5941 -0.2197 -4.8996 32 1 2.0475 0.8080 -4.9003 33 1 2.7291 -1.6997 -6.0072 34 1 3.3819 -2.6258 -9.1446 35 1 3.0875 0.9959 1.9691 36 1 3.9089 -0.1623 3.9800 37 1 3.3156 -2.5194 4.3728 38 1 1.0694 -2.5553 0.7428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151650646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:31 Heat of formation + Delta-G solvation = -54.023677 kcal Electronic energy + Delta-G solvation = -20744.767546 eV Core-core repulsion = 17308.608868 eV Total energy + Delta-G solvation = -3436.158679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.99904 -40.38368 -38.71658 -35.73046 -34.42380 -33.79659 -31.26349 -30.74468 -29.77859 -27.67467 -25.10385 -23.71297 -22.89903 -22.10787 -21.44602 -19.97083 -17.71236 -17.37769 -17.06512 -16.40455 -16.16103 -15.70624 -15.60206 -15.37865 -14.61073 -14.34935 -14.15273 -13.82031 -13.72041 -13.41349 -13.19708 -12.91702 -12.77778 -12.46813 -12.19815 -12.09623 -11.62323 -11.38512 -11.18720 -11.10921 -10.83499 -10.80893 -10.16682 -9.86686 -9.67530 -9.14030 -9.00465 -8.86984 -8.83505 -7.01357 -5.80915 -3.11984 0.93038 1.03546 2.66773 3.12113 3.41664 3.45141 3.47242 3.50996 3.99891 4.27783 4.45549 4.56774 4.72185 4.78192 4.83627 4.94332 4.99746 5.17745 5.33832 5.45309 5.48506 5.52577 5.63142 5.75598 5.79802 5.83410 5.93564 5.94230 6.05878 6.13106 6.25648 6.45724 6.67916 6.68875 6.71810 7.57316 7.63625 8.27829 8.36781 9.47766 10.02443 10.37021 11.41588 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035996 B = 0.002718 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.683863 B =10300.905138 C =10623.090838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.109 0.891 4 C 0.513 3.487 5 O -0.531 6.531 6 N -0.721 5.721 7 C 0.111 3.889 8 C 0.145 3.855 9 N -0.730 5.730 10 C -0.246 4.246 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.931 5.931 14 Si 0.911 3.089 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 C -0.037 4.037 19 C -0.123 4.123 20 C -0.094 4.094 21 C -0.156 4.156 22 C 0.096 3.904 23 F -0.141 7.141 24 C -0.118 4.118 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 6.445 24.943 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.407 6.407 6 N -0.373 5.373 7 C -0.013 4.013 8 C 0.017 3.983 9 N -0.375 5.375 10 C -0.377 4.377 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.579 5.579 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.037 4.037 19 C -0.141 4.141 20 C -0.112 4.112 21 C -0.175 4.175 22 C 0.077 3.923 23 F -0.120 7.120 24 C -0.137 4.137 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.233 0.767 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.594 5.748 24.858 25.766 hybrid contribution -0.273 0.161 -1.033 1.081 sum -3.867 5.910 23.825 24.850 Atomic orbital electron populations 1.21824 0.91640 1.03386 1.03185 1.20338 0.98010 1.00405 0.90694 0.87290 1.20348 0.80661 0.84875 0.84374 1.90753 1.37383 1.26018 1.86581 1.45912 1.53524 1.32096 1.05725 1.21592 0.99670 0.96731 0.83305 1.20752 0.96698 0.94996 0.85859 1.42188 1.61664 1.33502 1.00135 1.19144 1.26335 1.08969 0.83209 0.91080 1.24785 1.00208 0.97797 0.98008 1.69662 1.38887 1.20607 1.28718 0.86218 0.77874 0.77868 0.83894 1.21174 1.21593 1.21176 1.19147 0.96728 0.93238 0.94609 1.21080 0.98096 1.00421 0.94503 1.20924 0.99127 0.93683 0.97491 1.21132 1.00395 0.95828 1.00128 1.17668 0.99327 0.79013 0.96271 1.91499 1.91129 1.34537 1.94794 1.20924 1.01608 0.94896 0.96238 0.91670 0.91068 0.91203 0.76660 0.91277 0.91284 0.95822 0.95830 0.77994 0.93278 0.85318 0.85005 0.84930 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.90 37.16 0.33 -0.70 16 2 C -0.07 -0.67 2.90 -92.93 -0.27 -0.94 16 3 H 0.11 0.74 7.88 -51.93 -0.41 0.33 16 4 C 0.51 6.89 7.03 -10.99 -0.08 6.82 16 5 O -0.53 -9.51 15.13 5.55 0.08 -9.42 16 6 N -0.72 -9.30 5.45 -60.29 -0.33 -9.63 16 7 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 8 C 0.15 2.80 6.37 -4.04 -0.03 2.77 16 9 N -0.73 -18.50 5.60 -59.91 -0.34 -18.84 16 10 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 11 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 12 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 13 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 14 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.04 -0.38 4.39 -104.63 -0.46 -0.84 16 19 C -0.12 -1.08 9.67 -39.57 -0.38 -1.46 16 20 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16 21 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 22 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 23 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 24 C -0.12 -1.42 7.92 -39.51 -0.31 -1.73 16 25 H 0.06 0.54 7.37 -51.93 -0.38 0.15 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 28 H 0.40 3.90 7.89 -40.82 -0.32 3.58 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.39 10.40 7.67 -40.82 -0.31 10.09 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.13 0.81 7.94 -52.48 -0.42 0.39 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.66 7.51 -52.49 -0.39 1.26 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -33.81 330.01 -7.55 -41.36 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.14 Total: 7.57 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.55 Total: -3.87 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.06 Total: -56.04 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.81 -7.55 -41.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151650646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.664 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds