Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46721 * 2 1 4 4 C 1.50702 * 109.47086 * 240.00379 * 2 1 3 5 5 H 1.07995 * 119.99855 * 240.00029 * 4 2 1 6 6 C 1.37872 * 119.99985 * 59.99874 * 4 2 1 7 7 N 1.31510 * 120.00511 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47235 * 89.99792 * 8 6 4 10 10 H 1.48496 * 109.47330 * 209.99929 * 8 6 4 11 11 H 1.48505 * 109.47081 * 330.00316 * 8 6 4 12 12 C 1.52995 * 109.47061 * 119.99849 * 2 1 3 13 13 N 1.46493 * 109.47330 * 300.00377 * 12 2 1 14 14 C 1.34777 * 119.99996 * 180.02562 * 13 12 2 15 15 O 1.21285 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00269 * 179.97438 * 14 13 12 17 17 C 1.50696 * 109.47366 * 179.97438 * 16 14 13 18 18 C 1.38752 * 120.77250 * 269.97684 * 17 16 14 19 19 C 1.38108 * 119.21991 * 180.02562 * 18 17 16 20 20 N 1.31925 * 120.80242 * 0.02562 * 19 18 17 21 21 C 1.32038 * 121.68882 * 359.68313 * 20 19 18 22 22 F 1.35096 * 119.64981 * 180.28646 * 21 20 19 23 23 C 1.38507 * 120.77580 * 90.00130 * 17 16 14 24 24 H 1.09004 * 109.47324 * 300.00156 * 1 2 3 25 25 H 1.09004 * 109.47618 * 60.00125 * 1 2 3 26 26 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46495 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47184 * 300.00135 * 3 2 1 29 29 H 1.08997 * 109.47258 * 60.00549 * 3 2 1 30 30 H 0.97004 * 120.00579 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47119 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46999 * 60.00154 * 12 2 1 33 33 H 0.96997 * 120.00608 * 359.97438 * 13 12 2 34 34 H 1.08999 * 109.46813 * 59.99685 * 16 14 13 35 35 H 1.09004 * 109.46895 * 299.99906 * 16 14 13 36 36 H 1.07995 * 120.38911 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.59612 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.42704 * 359.94978 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4453 14 6 1.8776 -0.4909 3.6695 15 8 2.5750 -1.4769 3.7807 16 6 1.3757 0.2198 4.9000 17 6 1.8780 -0.4907 6.1304 18 6 1.1407 -1.5130 6.7105 19 6 1.6311 -2.1419 7.8380 20 7 2.7857 -1.7813 8.3644 21 6 3.5175 -0.8170 7.8371 22 9 4.6965 -0.4849 8.4069 23 6 3.0861 -0.1381 6.7089 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9942 0.7582 2.3565 34 1 0.2858 0.2198 4.9003 35 1 1.7391 1.2475 4.8996 36 1 0.1941 -1.8128 6.2858 37 1 1.0620 -2.9382 8.2947 38 1 3.6860 0.6528 6.2835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161259706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = -73.487725 kcal Electronic energy + Delta-G solvation = -21249.454628 eV Core-core repulsion = 17812.451925 eV Total energy + Delta-G solvation = -3437.002703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.06793 -41.40456 -40.37106 -38.12167 -34.99745 -34.97205 -32.75402 -31.86416 -29.89963 -27.52913 -27.40399 -26.52439 -24.68788 -23.60294 -21.48581 -20.58588 -18.71221 -18.37224 -18.31571 -17.62430 -17.08623 -17.07229 -16.68000 -16.35807 -16.33724 -15.38044 -14.95899 -14.89942 -14.67780 -14.49290 -14.11251 -13.91275 -13.75287 -13.35734 -13.15384 -13.07187 -12.73870 -12.60395 -12.58207 -12.22089 -12.13350 -11.45891 -11.27795 -11.13502 -10.76358 -10.71275 -10.55724 -10.38875 -10.00383 -9.91233 -8.02254 -6.17605 -0.06716 0.04426 1.41859 1.45517 1.53005 1.71606 2.27339 2.46840 2.58916 2.71843 3.21563 3.34565 3.66308 3.93058 4.00245 4.03488 4.34516 4.46583 4.52739 4.55014 4.63074 4.74857 4.79043 4.81454 5.03486 5.09204 5.13464 5.20976 5.22906 5.39749 5.61919 5.63252 5.68389 5.70396 6.19108 6.24597 6.45223 6.62404 6.70596 6.87208 7.36284 7.50355 8.96206 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036932 B = 0.003138 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.978235 B = 8921.776386 C = 9028.817184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.149 3.851 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.592 6.592 16 C -0.097 4.097 17 C 0.001 3.999 18 C -0.165 4.165 19 C 0.129 3.871 20 N -0.545 5.545 21 C 0.279 3.721 22 F -0.125 7.125 23 C -0.185 4.185 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.412 0.588 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 2.148 16.981 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.768 3.232 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.360 5.360 14 C 0.294 3.706 15 O -0.473 6.473 16 C -0.136 4.136 17 C -0.008 4.008 18 C -0.184 4.184 19 C -0.026 4.026 20 N -0.261 5.261 21 C 0.126 3.874 22 F -0.105 7.105 23 C -0.206 4.206 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.250 0.750 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.189 0.811 37 H 0.216 0.784 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.410 1.186 17.650 18.016 hybrid contribution 0.479 0.141 -1.811 1.879 sum -2.930 1.327 15.839 16.163 Atomic orbital electron populations 1.21670 0.96858 0.98695 1.00633 1.18358 0.93428 0.93015 0.90197 1.21676 0.97803 0.97821 1.00616 1.21301 1.31663 1.12120 0.91791 0.94007 1.25406 0.95194 0.95573 1.00838 1.69894 1.36968 1.23207 1.23566 0.85823 0.78638 0.78566 0.80157 1.20490 1.20857 1.20263 1.21215 0.96803 0.95088 0.84447 1.46091 1.52772 1.32017 1.05094 1.21062 0.79880 0.84306 0.85358 1.90716 1.40263 1.28793 1.87499 1.20814 1.05479 1.00913 0.86375 1.19864 0.92454 0.94320 0.94145 1.22468 1.03072 0.95917 0.96989 1.23064 0.89221 0.97740 0.92612 1.66980 1.08957 1.15141 1.34972 1.18332 0.83313 0.94071 0.91682 1.91578 1.43426 1.90680 1.84783 1.21870 0.98716 1.03737 0.96284 0.93789 0.92103 0.96380 0.96559 0.92066 0.93848 0.93044 0.94765 0.94446 0.74989 0.83318 0.84280 0.81058 0.78437 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.08 71.98 0.58 -4.41 16 2 C 0.05 2.21 0.50 -52.93 -0.03 2.19 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.35 8.01 25.60 0.21 -27.15 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -46.62 9.35 21.44 0.20 -46.42 16 8 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.15 5.89 4.50 86.38 0.39 6.28 16 13 N -0.71 -20.68 4.96 -463.07 -2.30 -22.97 16 14 C 0.51 13.99 7.82 87.66 0.69 14.67 16 15 O -0.59 -22.35 16.03 -3.04 -0.05 -22.40 16 16 C -0.10 -1.50 5.88 29.10 0.17 -1.33 16 17 C 0.00 0.01 4.41 -19.68 -0.09 -0.08 16 18 C -0.16 -2.81 9.81 22.36 0.22 -2.59 16 19 C 0.13 2.41 11.18 84.65 0.95 3.35 16 20 N -0.54 -13.92 10.37 -196.92 -2.04 -15.96 16 21 C 0.28 7.25 8.41 84.74 0.71 7.96 16 22 F -0.13 -3.41 17.29 44.97 0.78 -2.63 16 23 C -0.18 -4.10 9.79 22.41 0.22 -3.88 16 24 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 25 H 0.06 2.85 6.07 -2.38 -0.01 2.84 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 29 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 30 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 9.76 6.16 -92.71 -0.57 9.19 16 34 H 0.15 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.14 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.82 321.52 4.16 -62.66 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.51 Total: 11.28 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.03 Total: -7.48 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -4.14 Total: -85.36 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -66.82 4.16 -62.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161259706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.829 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds