Wall clock time and date at job start Tue Mar 31 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47376 * 1.13904 * 3 2 1 5 5 C 1.53005 * 109.47128 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.46862 * 180.02562 * 5 4 3 7 7 C 1.38086 * 119.99871 * 180.02562 * 6 5 4 8 8 N 1.31360 * 119.76836 * 0.02562 * 7 6 5 9 9 C 1.34035 * 121.97168 * 179.97438 * 8 7 6 10 10 C 1.40434 * 120.12653 * 179.97438 * 9 8 7 11 11 C 1.36275 * 119.96857 * 180.02562 * 10 9 8 12 12 C 1.39297 * 121.07206 * 0.02562 * 11 10 9 13 13 C 1.36130 * 120.76784 * 0.02562 * 12 11 10 14 14 C 1.40851 * 119.70683 * 359.66253 * 13 12 11 15 15 C 1.40240 * 120.56287 * 179.72711 * 14 13 12 16 16 C 1.40265 * 118.13337 * 180.35287 * 15 14 13 17 17 C 1.40900 * 120.69378 * 180.25668 * 16 15 14 18 18 H 1.08011 * 119.99654 * 204.68153 * 17 16 15 19 19 C 1.40067 * 120.00451 * 24.67962 * 17 16 15 20 20 N 1.30786 * 119.99443 * 14.78392 * 19 17 16 21 21 Si 1.86801 * 119.99782 * 194.78329 * 19 17 16 22 22 H 1.48493 * 109.47357 * 60.00282 * 21 19 17 23 23 H 1.48504 * 109.46804 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47143 * 299.99730 * 21 19 17 25 25 H 4.44652 * 5.63296 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47260 * 241.13715 * 3 2 1 27 27 H 1.09006 * 109.47268 * 121.14145 * 3 2 1 28 28 H 1.09000 * 109.46577 * 59.99649 * 4 3 2 29 29 H 1.08990 * 109.46781 * 300.00065 * 4 3 2 30 30 H 1.08996 * 109.46721 * 60.00224 * 5 4 3 31 31 H 1.09002 * 109.47252 * 300.00085 * 5 4 3 32 32 H 0.97002 * 120.00550 * 359.97438 * 6 5 4 33 33 H 1.08007 * 120.01475 * 0.04542 * 10 9 8 34 34 H 1.07996 * 119.46623 * 180.02562 * 11 10 9 35 35 H 1.07993 * 119.61887 * 180.02562 * 12 11 10 36 36 H 1.08003 * 120.14739 * 179.97438 * 13 12 11 37 37 H 1.07992 * 120.93343 * 0.62860 * 15 14 13 38 38 H 0.97003 * 119.99477 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4414 -0.0287 5 6 4.6868 -1.4406 -0.0293 6 7 5.1757 -2.8213 -0.0574 7 6 6.5334 -3.0729 -0.0625 8 7 7.3825 -2.0708 -0.0416 9 6 8.7088 -2.2643 -0.0451 10 6 9.5816 -1.1643 -0.0227 11 6 10.9296 -1.3647 -0.0268 12 6 11.4652 -2.6503 -0.0534 13 6 10.6532 -3.7427 -0.0767 14 6 9.2550 -3.5734 -0.0666 15 6 8.4018 -4.6860 -0.0959 16 6 7.0177 -4.4584 -0.0918 17 6 6.1114 -5.5369 -0.1149 18 1 5.1134 -5.3954 -0.5031 19 6 6.5044 -6.7925 0.3655 20 7 7.5864 -6.9054 1.0915 21 14 5.4833 -8.3057 -0.0309 22 1 5.4202 -8.4886 -1.5031 23 1 6.1080 -9.5011 0.5906 24 1 4.1097 -8.1303 0.5055 25 1 -1.0498 -0.0004 0.0002 26 1 3.0091 0.4969 0.9000 27 1 3.0091 0.5323 -0.8796 28 1 2.7935 -1.9375 -0.9287 29 1 2.7936 -1.9729 0.8509 30 1 5.0501 -0.9443 0.8705 31 1 5.0495 -0.9091 -0.9091 32 1 4.5457 -3.5588 -0.0716 33 1 9.1847 -0.1600 -0.0020 34 1 11.5933 -0.5129 -0.0091 35 1 12.5371 -2.7819 -0.0557 36 1 11.0793 -4.7349 -0.0977 37 1 8.7992 -5.6899 -0.1165 38 1 7.8584 -7.7749 1.4245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162440205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:04 Heat of formation + Delta-G solvation = 71.033148 kcal Electronic energy + Delta-G solvation = -20256.799987 eV Core-core repulsion = 17256.833404 eV Total energy + Delta-G solvation = -2999.966583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83028 -38.54703 -36.99254 -35.88536 -34.84667 -33.21442 -32.36792 -30.94894 -29.77665 -27.35476 -26.96067 -23.82024 -23.28032 -22.70682 -22.06527 -19.82374 -18.97829 -18.47484 -17.79865 -17.19872 -16.59084 -16.36041 -16.16933 -15.34828 -15.03948 -14.93412 -14.69317 -14.47532 -14.12243 -14.07829 -13.71687 -13.46619 -13.27003 -12.91613 -12.75456 -12.59422 -12.34164 -12.24728 -12.01448 -11.92477 -11.59073 -11.22804 -11.13489 -10.96937 -10.59089 -10.27428 -9.97364 -8.97683 -8.66731 -8.23821 -6.25122 0.15400 0.55372 1.37893 1.42307 1.51550 1.75505 1.86946 1.94818 2.17127 2.36653 2.58572 3.02303 3.50780 3.84393 4.01969 4.08898 4.17333 4.24859 4.35628 4.36422 4.52729 4.67347 4.72695 4.74111 4.78825 4.84316 4.94570 5.10056 5.20443 5.22233 5.24180 5.28933 5.45492 5.62034 5.72612 5.85984 5.97657 6.04254 6.30708 6.35430 6.64668 6.73323 6.73855 6.79051 6.97068 7.75415 8.27565 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.005907 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.203918 B = 4739.267218 C = 7466.817694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C -0.006 4.006 4 C -0.113 4.113 5 C 0.143 3.857 6 N -0.712 5.712 7 C 0.373 3.627 8 N -0.569 5.569 9 C 0.057 3.943 10 C -0.103 4.103 11 C -0.150 4.150 12 C -0.130 4.130 13 C -0.140 4.140 14 C -0.096 4.096 15 C -0.216 4.216 16 C 0.016 3.984 17 C -0.461 4.461 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.813 5.813 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.253 1.253 25 H 0.244 0.756 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 6.586 -1.638 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.217 4.217 3 C -0.043 4.043 4 C -0.151 4.151 5 C 0.019 3.981 6 N -0.350 5.350 7 C 0.118 3.882 8 N -0.290 5.290 9 C -0.060 4.060 10 C -0.123 4.123 11 C -0.170 4.170 12 C -0.149 4.149 13 C -0.159 4.159 14 C -0.099 4.099 15 C -0.242 4.242 16 C 0.010 3.990 17 C -0.490 4.490 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.437 5.437 21 Si 0.807 3.193 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.177 1.177 25 H 0.261 0.739 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.248 0.752 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.659 7.487 -1.467 10.127 hybrid contribution -0.269 -2.037 0.047 2.056 sum -6.928 5.450 -1.421 8.929 Atomic orbital electron populations 1.25690 0.96891 0.99568 1.00508 1.23561 0.95348 1.01577 1.01185 1.18600 0.84416 0.96685 1.04630 1.21602 0.93033 0.97127 1.03294 1.21123 0.93340 0.82582 1.01046 1.44100 1.01743 1.08354 1.80766 1.20313 0.86073 0.89147 0.92665 1.67070 1.02706 1.33371 1.25902 1.18565 0.89228 0.92425 1.05775 1.20692 0.93164 0.96860 1.01540 1.20811 0.94337 0.97568 1.04264 1.20891 1.00023 0.92256 1.01701 1.21032 0.92168 0.99109 1.03631 1.18942 0.95155 0.94111 1.01706 1.21258 0.92257 0.96722 1.13997 1.19326 0.94048 0.90630 0.95036 1.19598 0.99881 0.93895 1.35627 0.88977 1.26817 0.96406 1.03379 0.91892 1.69870 1.22977 1.27577 1.23322 0.85173 0.78937 0.75593 0.79639 1.18504 1.19727 1.17696 0.73931 0.88493 0.88316 0.90869 0.91149 0.93161 0.92788 0.75224 0.85758 0.83620 0.84126 0.87068 0.86797 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.92 19.25 74.32 1.43 -2.49 16 2 C -0.22 -4.71 13.34 31.12 0.42 -4.30 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 4 C -0.11 -2.65 5.28 30.60 0.16 -2.48 16 5 C 0.14 4.42 5.67 86.38 0.49 4.91 16 6 N -0.71 -27.67 5.63 -339.39 -1.91 -29.58 16 7 C 0.37 18.12 7.67 135.71 1.04 19.16 16 8 N -0.57 -27.94 9.45 -180.99 -1.71 -29.65 16 9 C 0.06 2.82 6.60 40.24 0.27 3.09 16 10 C -0.10 -4.24 9.94 22.35 0.22 -4.02 16 11 C -0.15 -5.31 9.95 22.07 0.22 -5.09 16 12 C -0.13 -4.75 9.96 22.03 0.22 -4.53 16 13 C -0.14 -6.16 9.75 22.42 0.22 -5.95 16 14 C -0.10 -4.89 5.74 -21.26 -0.12 -5.02 16 15 C -0.22 -11.84 8.53 23.25 0.20 -11.64 16 16 C 0.02 0.86 5.74 -19.90 -0.11 0.74 16 17 C -0.46 -22.78 8.60 23.37 0.20 -22.58 16 18 H 0.09 4.11 6.76 -2.90 -0.02 4.09 16 19 C 0.03 1.49 5.22 85.29 0.45 1.94 16 20 N -0.81 -41.27 10.83 21.85 0.24 -41.03 16 21 Si 0.99 35.66 29.59 68.60 2.03 37.69 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 23 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 25 H 0.24 2.61 7.80 -4.43 -0.03 2.57 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 14.87 6.80 -92.71 -0.63 14.24 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.11 6.47 6.15 -2.91 -0.02 6.45 16 38 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 Total: -1.00 -63.59 330.65 4.54 -59.04 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: 0.44 Total: 41.73 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 5.46 Total: -38.21 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.38 Total: -100.26 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -63.59 4.54 -59.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162440205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.077 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds