Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46871 * 2 1 4 4 C 1.52994 * 109.46927 * 240.00078 * 2 1 3 5 5 C 1.50698 * 109.47089 * 119.99890 * 2 1 3 6 6 O 1.21299 * 119.99982 * 0.02562 * 5 2 1 7 7 N 1.34773 * 120.00102 * 179.97438 * 5 2 1 8 8 C 1.39953 * 120.00068 * 185.51827 * 7 5 2 9 9 C 1.38668 * 120.09849 * 24.84956 * 8 7 5 10 10 C 1.38418 * 119.99453 * 179.97438 * 9 8 7 11 11 F 1.35099 * 119.90111 * 179.97438 * 10 9 8 12 12 C 1.38590 * 120.19372 * 0.02562 * 10 9 8 13 13 C 1.38102 * 120.20047 * 359.71533 * 12 10 9 14 14 C 1.38945 * 119.99815 * 0.55958 * 13 12 10 15 15 N 1.39405 * 120.09299 * 179.72152 * 14 13 12 16 16 C 1.36798 * 119.99833 * 359.72190 * 15 14 13 17 17 H 1.07994 * 120.00585 * 0.02562 * 16 15 14 18 18 C 1.38750 * 119.99499 * 179.72455 * 16 15 14 19 19 N 1.31632 * 119.99854 * 180.27431 * 18 16 15 20 20 Si 1.86795 * 120.00466 * 0.28292 * 18 16 15 21 21 H 1.48494 * 109.47676 * 89.99177 * 20 18 16 22 22 H 1.48505 * 109.47401 * 210.00104 * 20 18 16 23 23 H 1.48505 * 109.47025 * 329.99603 * 20 18 16 24 24 H 1.09000 * 109.47015 * 300.00229 * 1 2 3 25 25 H 1.09002 * 109.47296 * 59.99820 * 1 2 3 26 26 H 1.08998 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46618 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47751 * 299.99875 * 3 2 1 29 29 H 1.09000 * 109.47488 * 60.00060 * 3 2 1 30 30 H 1.09003 * 109.47199 * 299.99995 * 4 2 1 31 31 H 1.09003 * 109.47573 * 59.99929 * 4 2 1 32 32 H 1.09004 * 109.46945 * 180.02562 * 4 2 1 33 33 H 0.97001 * 119.99605 * 5.52485 * 7 5 2 34 34 H 1.07997 * 120.00410 * 359.94927 * 9 8 7 35 35 H 1.08004 * 119.90204 * 180.02562 * 12 10 9 36 36 H 1.07993 * 119.99930 * 180.30488 * 13 12 10 37 37 H 0.97003 * 119.99996 * 179.72885 * 15 14 13 38 38 H 0.96998 * 120.00013 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2441 -1.1717 2.0287 7 7 3.3574 -0.8340 1.4435 8 6 3.8249 -1.5919 2.5232 9 6 3.0398 -2.6044 3.0537 10 6 3.5045 -3.3530 4.1212 11 9 2.7379 -4.3387 4.6370 12 6 4.7534 -3.0937 4.6632 13 6 5.5441 -2.0908 4.1377 14 6 5.0834 -1.3305 3.0699 15 7 5.8775 -0.3138 2.5416 16 6 7.1099 -0.0597 3.0783 17 1 7.4679 -0.6470 3.9109 18 6 7.9027 0.9484 2.5488 19 7 9.0908 1.1893 3.0617 20 14 7.2839 1.9640 1.1083 21 1 6.5493 3.1497 1.6177 22 1 8.4370 2.4115 0.2864 23 1 6.3733 1.1380 0.2752 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 3.9870 -0.3975 0.8485 34 1 2.0658 -2.8086 2.6343 35 1 5.1115 -3.6810 5.4959 36 1 6.5188 -1.8947 4.5594 37 1 5.5562 0.2136 1.7936 38 1 9.6448 1.8944 2.6918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = -72.273294 kcal Electronic energy + Delta-G solvation = -22213.756599 eV Core-core repulsion = 18776.806558 eV Total energy + Delta-G solvation = -3436.950041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.50288 -41.88628 -39.93747 -36.97990 -36.52066 -35.72269 -33.94321 -30.90301 -29.73681 -28.27510 -28.05049 -26.28485 -25.17665 -23.13072 -22.50045 -20.77417 -20.13857 -18.89213 -18.22899 -17.80058 -16.98509 -16.74187 -16.38749 -16.20194 -16.07557 -15.58494 -15.26672 -14.89810 -14.72450 -14.68349 -14.24124 -14.10778 -13.74479 -13.37033 -13.29615 -13.11537 -13.03455 -12.87395 -12.66290 -12.57223 -12.21093 -11.99573 -11.93226 -11.91350 -11.81600 -11.36124 -10.71534 -10.57082 -9.38510 -8.46874 -8.43961 -5.77891 0.34976 0.53472 1.22405 1.33368 1.36670 1.57495 1.97942 2.18115 2.71889 2.92909 3.18960 3.41990 3.70658 3.80633 3.88456 3.94411 4.20283 4.23546 4.56560 4.58257 4.67033 4.69275 4.79381 4.90759 4.92780 4.94148 5.00389 5.16582 5.18510 5.26749 5.29120 5.33863 5.43480 5.56540 5.64523 5.84356 6.18059 6.37074 6.59905 7.06625 7.25738 7.32278 8.70352 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.007969 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.062399 B = 3512.978603 C = 5703.124550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.141 4.141 5 C 0.512 3.488 6 O -0.558 6.558 7 N -0.654 5.654 8 C 0.052 3.948 9 C -0.109 4.109 10 C -0.011 4.011 11 F -0.158 7.158 12 C -0.097 4.097 13 C -0.184 4.184 14 C 0.183 3.817 15 N -0.596 5.596 16 C -0.307 4.307 17 H 0.092 0.908 18 C -0.016 4.016 19 N -0.926 5.926 20 Si 0.940 3.060 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.236 1.236 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.381 0.619 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -0.022 -10.488 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.083 4.083 3 C -0.204 4.204 4 C -0.198 4.198 5 C 0.301 3.699 6 O -0.436 6.436 7 N -0.298 5.298 8 C -0.047 4.047 9 C -0.131 4.131 10 C -0.034 4.034 11 F -0.137 7.137 12 C -0.117 4.117 13 C -0.209 4.209 14 C 0.067 3.933 15 N -0.207 5.207 16 C -0.436 4.436 17 H 0.110 0.890 18 C -0.216 4.216 19 N -0.566 5.566 20 Si 0.762 3.238 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.160 1.160 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.217 0.783 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.656 -0.116 -9.922 16.082 hybrid contribution 0.489 0.635 -0.398 0.895 sum -12.166 0.519 -10.319 15.962 Atomic orbital electron populations 1.21663 0.91097 1.02489 1.02866 1.20906 0.98625 0.96880 0.91885 1.21980 1.01373 0.92852 1.04201 1.21927 1.01559 1.00527 0.95822 1.21544 0.80955 0.79205 0.88178 1.90631 1.55812 1.49520 1.47614 1.43255 1.08108 1.50357 1.28113 1.16717 0.94049 0.97938 0.96043 1.20779 1.00853 0.94370 0.97123 1.17122 0.92241 0.93734 1.00341 1.91363 1.75459 1.60275 1.86626 1.20905 0.92181 0.98176 1.00399 1.20340 1.01622 0.99320 0.99612 1.17723 0.89927 0.90997 0.94628 1.40751 1.15575 1.31675 1.32717 1.19252 0.91641 1.17156 1.15525 0.89018 1.25786 0.95574 0.98781 1.01413 1.69829 1.10704 1.32822 1.43196 0.85681 0.79358 0.79684 0.79078 1.18866 1.20040 1.15957 0.93272 0.88906 0.92913 0.92222 0.88114 0.92694 0.92420 0.88357 0.91923 0.75288 0.84269 0.83640 0.85455 0.78330 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 7.76 71.98 0.56 -1.77 16 2 C -0.08 -1.62 0.87 -52.93 -0.05 -1.66 16 3 C -0.15 -2.51 8.37 71.98 0.60 -1.91 16 4 C -0.14 -2.22 8.38 71.98 0.60 -1.62 16 5 C 0.51 15.34 6.29 87.66 0.55 15.89 16 6 O -0.56 -20.70 13.15 -3.09 -0.04 -20.74 16 7 N -0.65 -20.46 4.97 -303.01 -1.51 -21.97 16 8 C 0.05 1.97 6.45 38.30 0.25 2.22 16 9 C -0.11 -4.27 8.69 22.42 0.19 -4.07 16 10 C -0.01 -0.44 7.30 22.40 0.16 -0.27 16 11 F -0.16 -5.98 17.26 44.97 0.78 -5.20 16 12 C -0.10 -3.55 10.01 22.32 0.22 -3.33 16 13 C -0.18 -7.49 9.30 22.41 0.21 -7.28 16 14 C 0.18 7.55 6.64 38.46 0.26 7.81 16 15 N -0.60 -25.37 5.21 -183.92 -0.96 -26.33 16 16 C -0.31 -15.36 10.04 84.04 0.84 -14.52 16 17 H 0.09 5.01 5.91 -2.91 -0.02 4.99 16 18 C -0.02 -0.81 5.50 84.85 0.47 -0.35 16 19 N -0.93 -50.94 13.97 21.64 0.30 -50.63 16 20 Si 0.94 36.02 27.74 68.60 1.90 37.93 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.24 -7.51 6.51 99.48 0.65 -6.86 16 24 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 27 H 0.06 1.02 7.45 -2.38 -0.02 1.00 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.98 7.70 -2.38 -0.02 0.96 16 33 H 0.41 11.12 6.20 -92.71 -0.57 10.55 16 34 H 0.14 5.54 5.78 -2.91 -0.02 5.52 16 35 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.13 5.40 5.96 -2.91 -0.02 5.39 16 37 H 0.38 14.41 4.16 -92.71 -0.39 14.03 16 38 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -61.41 315.05 5.43 -55.98 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: 0.08 Total: 41.82 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.87 Total: -10.86 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -2.16 Total: -98.93 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.74 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 1.90 Total: 37.93 kcal Total: -61.41 5.43 -55.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.298 kcal (2) G-P(sol) polarization free energy of solvation -61.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds