Wall clock time and date at job start Tue Mar 31 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46753 * 2 1 4 4 C 1.53004 * 109.47281 * 120.00296 * 2 1 3 5 5 C 1.52995 * 109.46994 * 294.39556 * 4 2 1 6 6 C 1.50702 * 109.47329 * 181.67380 * 5 4 2 7 7 H 1.08000 * 119.99471 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00486 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00030 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99842 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46812 * 90.00411 * 10 8 6 12 12 H 1.48498 * 109.47021 * 210.00362 * 10 8 6 13 13 H 1.48499 * 109.47143 * 330.00617 * 10 8 6 14 14 N 1.46903 * 109.46986 * 240.00360 * 2 1 3 15 15 C 1.48553 * 110.99809 * 186.99535 * 14 2 1 16 16 C 1.54379 * 104.59502 * 200.95817 * 15 14 2 17 17 C 1.54266 * 105.05787 * 23.85374 * 16 15 14 18 18 C 1.48559 * 110.99910 * 71.57482 * 14 2 1 19 19 H 1.09000 * 110.51133 * 40.21205 * 18 14 2 20 20 C 1.50700 * 110.41261 * 277.81969 * 18 14 2 21 21 N 1.29030 * 124.91696 * 318.37250 * 20 18 14 22 22 C 1.31778 * 117.12228 * 180.02562 * 21 20 18 23 23 C 1.33633 * 114.50420 * 359.97438 * 22 21 20 24 24 S 1.70978 * 124.91605 * 138.37429 * 20 18 14 25 25 H 1.09000 * 109.47045 * 299.99084 * 1 2 3 26 26 H 1.08995 * 109.47209 * 59.99828 * 1 2 3 27 27 H 1.09007 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46603 * 54.39368 * 4 2 1 29 29 H 1.08994 * 109.46553 * 174.39490 * 4 2 1 30 30 H 1.08997 * 109.47167 * 301.67558 * 5 4 2 31 31 H 1.09007 * 109.47124 * 61.67507 * 5 4 2 32 32 H 0.97001 * 119.99671 * 180.02562 * 9 8 6 33 33 H 1.08999 * 110.41315 * 82.18357 * 15 14 2 34 34 H 1.09001 * 110.41725 * 319.73813 * 15 14 2 35 35 H 1.09001 * 110.32671 * 264.96009 * 16 15 14 36 36 H 1.08999 * 110.41362 * 142.79283 * 16 15 14 37 37 H 1.09005 * 110.32466 * 241.10143 * 17 16 15 38 38 H 1.08999 * 110.40761 * 118.94002 * 17 16 15 39 39 H 1.08006 * 122.74351 * 180.26971 * 22 21 20 40 40 H 1.08006 * 126.03991 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6484 0.0766 2.4945 6 6 2.1861 -0.6123 3.7222 7 1 2.7504 -1.5279 3.6241 8 6 1.9568 -0.0742 4.9708 9 7 2.4265 -0.6752 6.0421 10 14 0.9801 1.5091 5.1405 11 1 -0.4622 1.1875 5.2875 12 1 1.4463 2.2521 6.3387 13 1 1.1798 2.3460 3.9302 14 7 2.0197 -0.6924 -1.1995 15 6 3.4950 -0.8602 -1.1524 16 6 3.9089 -1.0779 -2.6236 17 6 2.7832 -0.4309 -3.4566 18 6 1.7838 0.1232 -2.4186 19 1 1.9869 1.1754 -2.2193 20 6 0.3685 -0.0550 -2.9045 21 7 -0.2621 -1.1799 -2.9458 22 6 -1.4988 -1.1591 -3.4005 23 6 -1.9359 0.0508 -3.7624 24 16 -0.6342 1.2043 -3.4808 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.5971 -1.7159 1.3007 29 1 3.1254 -0.8090 1.2003 30 1 2.0666 1.0810 2.4288 31 1 0.5620 0.1389 2.5592 32 1 2.2648 -0.2968 6.9206 33 1 3.7597 -1.7296 -0.5505 34 1 3.9672 0.0375 -0.7534 35 1 3.9784 -2.1432 -2.8438 36 1 4.8606 -0.5870 -2.8274 37 1 2.3001 -1.1786 -4.0857 38 1 3.1807 0.3785 -4.0690 39 1 -2.1106 -2.0464 -3.4702 40 1 -2.9142 0.2808 -4.1582 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:50 Heat of formation + Delta-G solvation = 24.057688 kcal Electronic energy + Delta-G solvation = -20117.772508 eV Core-core repulsion = 17251.212867 eV Total energy + Delta-G solvation = -2866.559640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15063 -39.70633 -36.68949 -34.70309 -32.53413 -32.01401 -29.77215 -29.28245 -27.13517 -25.87476 -23.75750 -22.70418 -21.92286 -20.85752 -20.17030 -19.04823 -18.92455 -17.11975 -16.84035 -16.22766 -16.09226 -15.78597 -15.41340 -15.13245 -14.80741 -14.49367 -14.18553 -14.15247 -13.80237 -13.46388 -13.36032 -12.94670 -12.68552 -12.52197 -12.39103 -12.30741 -12.20756 -12.06853 -11.75766 -11.49778 -11.43869 -11.40372 -11.18702 -10.75943 -10.43370 -10.26978 -9.68506 -9.43649 -8.30083 -6.33984 -0.18550 0.44074 0.84068 1.34029 1.35593 1.47753 1.98330 2.35040 2.96772 3.05163 3.17687 3.65093 3.79546 3.94114 4.03561 4.15856 4.28609 4.32767 4.41468 4.43555 4.59187 4.62171 4.68098 4.72686 4.80622 4.85479 4.90379 4.94796 5.04519 5.06618 5.15693 5.25282 5.29178 5.30734 5.47682 5.59487 5.64836 5.92799 6.07679 6.29441 6.73674 6.96361 7.30294 8.87084 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.004717 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.477894 B = 5935.075897 C = 6772.812010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 H 0.044 0.956 4 C -0.084 4.084 5 C -0.006 4.006 6 C -0.531 4.531 7 H 0.028 0.972 8 C 0.005 3.995 9 N -0.952 5.952 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.245 1.245 14 N -0.497 5.497 15 C 0.029 3.971 16 C -0.113 4.113 17 C -0.102 4.102 18 C 0.128 3.872 19 H 0.078 0.922 20 C 0.060 3.940 21 N -0.476 5.476 22 C 0.018 3.982 23 C -0.251 4.251 24 S 0.119 5.881 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.189 0.811 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 6.158 -25.555 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 H 0.062 0.938 4 C -0.122 4.122 5 C -0.043 4.043 6 C -0.569 4.569 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.593 5.593 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.168 1.168 14 N -0.222 5.222 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.142 4.142 18 C 0.016 3.984 19 H 0.096 0.904 20 C -0.218 4.218 21 N -0.190 5.190 22 C -0.132 4.132 23 C -0.389 4.389 24 S 0.372 5.628 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.206 0.794 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.082 6.247 -25.356 26.604 hybrid contribution -0.545 0.053 0.996 1.136 sum -5.627 6.301 -24.360 25.783 Atomic orbital electron populations 1.21825 0.94569 1.01486 1.01001 1.21790 0.95913 0.95303 0.89922 0.93814 1.21364 0.99769 0.98390 0.92672 1.19510 0.96150 0.95729 0.92944 1.21478 1.34170 1.09471 0.91823 0.95319 1.26013 0.96656 1.01239 0.95280 1.70073 1.48097 1.42208 0.98918 0.85674 0.79053 0.79492 0.78565 1.19223 1.20742 1.16840 1.65292 1.13096 1.43271 1.00580 1.23143 0.87120 1.01157 0.98479 1.22265 0.98569 1.01947 0.92298 1.22304 0.94493 1.00975 0.96410 1.21316 0.87845 0.96952 0.92242 0.90391 1.26843 1.01028 0.91280 1.02693 1.66192 1.08589 1.28044 1.16159 1.22230 0.91543 0.99396 1.00049 1.27416 1.05195 0.95194 1.11144 1.83899 1.06145 1.14062 1.58654 0.92622 0.92505 0.93521 0.93958 0.92840 0.96294 0.96301 0.92487 0.90907 0.93339 0.90922 0.88862 0.91374 0.88406 0.79447 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.49 71.98 0.61 -3.73 16 2 C 0.08 2.67 1.98 44.92 0.09 2.76 16 3 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 4 C -0.08 -3.50 4.44 30.59 0.14 -3.36 16 5 C -0.01 -0.27 3.77 29.85 0.11 -0.16 16 6 C -0.53 -31.72 9.66 25.60 0.25 -31.48 16 7 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 8 C 0.00 0.28 5.47 84.66 0.46 0.74 16 9 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 10 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 14 N -0.50 -14.77 4.91 -836.02 -4.10 -18.88 16 15 C 0.03 0.76 5.04 86.45 0.44 1.19 16 16 C -0.11 -2.19 7.00 31.49 0.22 -1.97 16 17 C -0.10 -1.95 6.54 31.49 0.21 -1.74 16 18 C 0.13 3.06 2.72 44.32 0.12 3.18 16 19 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 20 C 0.06 1.45 3.48 88.52 0.31 1.75 16 21 N -0.48 -12.80 10.43 -191.45 -2.00 -14.80 16 22 C 0.02 0.38 11.35 83.66 0.95 1.33 16 23 C -0.25 -4.20 11.37 66.77 0.76 -3.44 16 24 S 0.12 2.20 22.59 -56.49 -1.28 0.92 16 25 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 26 H 0.06 1.66 5.12 -2.39 -0.01 1.65 16 27 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.22 6.49 -2.39 -0.02 2.21 16 30 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 31 H 0.02 0.89 6.09 -2.38 -0.01 0.88 16 32 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.07 2.14 7.55 -2.39 -0.02 2.12 16 34 H 0.05 1.26 7.98 -2.39 -0.02 1.24 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.43 7.85 -2.38 -0.02 1.41 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.19 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -70.82 325.07 0.42 -70.39 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.96 Total: 11.11 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.66 Total: -34.91 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -5.80 Total: -94.47 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.28 Total: 0.92 kcal Total: -70.82 0.42 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.450 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds