Wall clock time and date at job start Tue Mar 31 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47092 * 2 1 4 4 N 1.46900 * 109.47332 * 239.99882 * 2 1 3 5 5 C 1.46909 * 110.99705 * 85.00198 * 4 2 1 6 6 C 1.53002 * 109.46750 * 204.99952 * 5 4 2 7 7 C 1.52997 * 109.46817 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47127 * 60.00361 * 7 6 5 9 9 C 1.50697 * 109.47239 * 59.99504 * 8 7 6 10 10 H 1.07998 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00021 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99560 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47250 * 90.00281 * 13 11 9 15 15 H 1.48499 * 109.47267 * 210.00443 * 13 11 9 16 16 H 1.48505 * 109.47285 * 330.00487 * 13 11 9 17 17 C 1.52999 * 109.46626 * 299.99539 * 8 7 6 18 18 C 1.52996 * 109.47268 * 85.00275 * 5 4 2 19 19 C 1.50706 * 109.47148 * 119.99978 * 2 1 3 20 20 C 1.33638 * 122.74787 * 274.73554 * 19 2 1 21 21 S 1.76198 * 107.91968 * 179.97438 * 20 19 2 22 22 C 1.70970 * 90.28582 * 0.27551 * 21 20 19 23 23 N 1.29031 * 110.16798 * 359.84119 * 22 21 20 24 24 H 1.08993 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47407 * 300.00216 * 1 2 3 26 26 H 1.09008 * 109.46570 * 59.99945 * 1 2 3 27 27 H 1.00899 * 111.00149 * 208.95124 * 4 2 1 28 28 H 1.08996 * 109.46883 * 324.99928 * 5 4 2 29 29 H 1.09002 * 109.47070 * 60.00054 * 6 5 4 30 30 H 1.08996 * 109.47407 * 299.99654 * 6 5 4 31 31 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 32 32 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 34 34 H 0.97002 * 119.99397 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.46719 * 180.02562 * 17 8 7 36 36 H 1.08993 * 109.47839 * 299.99931 * 17 8 7 37 37 H 1.09001 * 109.46993 * 300.00132 * 18 5 4 38 38 H 1.09000 * 109.47380 * 59.99238 * 18 5 4 39 39 H 1.07995 * 126.03982 * 0.03697 * 20 19 2 40 40 H 1.07997 * 124.92129 * 179.83916 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 1.9771 -0.5797 -3.6454 7 6 2.0419 0.3735 -4.8404 8 6 3.3704 1.1323 -4.8162 9 6 4.5111 0.1506 -4.8941 10 1 4.3089 -0.9085 -4.9552 11 6 5.8130 0.6047 -4.8884 12 7 6.0592 1.8944 -4.8144 13 14 7.2269 -0.6120 -4.9856 14 1 7.5784 -0.8499 -6.4088 15 1 8.4053 -0.0598 -4.2704 16 1 6.8212 -1.8939 -4.3551 17 6 3.4757 1.9346 -3.5177 18 6 3.4112 0.9809 -2.3224 19 6 2.0323 -0.7104 1.2305 20 6 2.1858 -0.0966 2.4076 21 16 2.7880 -1.2827 3.5631 22 6 2.7812 -2.4840 2.3466 23 7 2.3623 -1.9863 1.2322 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 2.9173 -1.1205 -1.0287 28 1 1.2577 0.9330 -2.2907 29 1 1.0306 -1.1199 -3.6629 30 1 2.8020 -1.2899 -3.7016 31 1 1.2169 1.0836 -4.7840 32 1 1.9664 -0.1980 -5.7655 33 1 3.4167 1.8110 -5.6678 34 1 6.9751 2.2139 -4.8107 35 1 4.4219 2.4755 -3.5006 36 1 2.6507 2.6446 -3.4612 37 1 3.4863 1.5524 -1.3972 38 1 4.2360 0.2706 -2.3785 39 1 1.9767 0.9425 2.6144 40 1 3.0837 -3.5107 2.4899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:38 Heat of formation + Delta-G solvation = 12.641856 kcal Electronic energy + Delta-G solvation = -20232.036618 eV Core-core repulsion = 17364.981950 eV Total energy + Delta-G solvation = -2867.054668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.05232 -39.68365 -36.69848 -34.30288 -32.40059 -31.21468 -30.26545 -28.75211 -26.76241 -26.06755 -23.72954 -23.02497 -21.88455 -20.71118 -20.27546 -18.89464 -17.75634 -17.08465 -16.64322 -16.14212 -15.96378 -15.75273 -15.09578 -14.92136 -14.57714 -14.47346 -14.11867 -13.69371 -13.52148 -13.19829 -13.09166 -12.87269 -12.77202 -12.60435 -12.56898 -12.36937 -12.16792 -11.90836 -11.71664 -11.43393 -10.94462 -10.71890 -10.57755 -10.51650 -10.37453 -10.31211 -9.74425 -9.14254 -8.02957 -6.12186 -0.18452 0.53113 0.80776 1.38104 1.40245 1.48931 1.86818 2.44959 3.16422 3.25062 3.39568 3.95566 4.09210 4.21880 4.33873 4.40938 4.44061 4.54310 4.56341 4.71499 4.72580 4.80308 4.88037 4.91960 5.01612 5.05442 5.13518 5.19095 5.28167 5.37291 5.47399 5.57937 5.62399 5.65801 5.75022 5.97651 6.23924 6.27677 6.46424 6.52495 6.89271 6.97754 7.53253 9.01569 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.004772 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.481699 B = 5865.848286 C = 6652.845718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 H 0.057 0.943 4 N -0.670 5.670 5 C 0.105 3.895 6 C -0.083 4.083 7 C -0.101 4.101 8 C 0.038 3.962 9 C -0.502 4.502 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.919 5.919 13 Si 0.938 3.062 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.271 1.271 17 C -0.098 4.098 18 C -0.113 4.113 19 C 0.047 3.953 20 C -0.261 4.261 21 S 0.158 5.842 22 C 0.012 3.988 23 N -0.487 5.487 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.338 0.662 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.045 0.955 33 H -0.011 1.011 34 H 0.256 0.744 35 H 0.054 0.946 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.194 0.806 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 -4.567 17.829 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.042 3.958 3 H 0.075 0.925 4 N -0.300 5.300 5 C -0.005 4.005 6 C -0.121 4.121 7 C -0.139 4.139 8 C 0.020 3.980 9 C -0.541 4.541 10 H 0.069 0.931 11 C -0.184 4.184 12 N -0.560 5.560 13 Si 0.765 3.235 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.196 1.196 17 C -0.137 4.137 18 C -0.152 4.152 19 C -0.085 4.085 20 C -0.401 4.401 21 S 0.411 5.589 22 C -0.285 4.285 23 N -0.201 5.201 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.007 0.993 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.211 0.789 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.540 -5.090 18.284 21.242 hybrid contribution 1.767 0.547 -0.937 2.074 sum -7.773 -4.543 17.347 19.544 Atomic orbital electron populations 1.21718 0.92365 1.02047 1.02176 1.20147 0.96613 0.94241 0.84839 0.92472 1.60672 1.33692 1.32059 1.03593 1.21462 0.95731 0.92718 0.90549 1.21226 1.00430 0.97411 0.93042 1.21466 0.97187 0.97893 0.97335 1.18692 0.92572 0.93798 0.92972 1.21413 0.91370 0.93117 1.48178 0.93149 1.25589 1.00893 0.96228 0.95656 1.70014 1.19712 1.13886 1.52374 0.85860 0.79718 0.79896 0.78051 1.20385 1.21362 1.19571 1.21308 0.99662 0.96969 0.95778 1.21881 0.98239 0.98448 0.96673 1.20448 1.02123 0.89527 0.96391 1.27120 1.10559 1.06317 0.96085 1.83742 1.59033 1.01117 1.15019 1.28973 1.02520 1.06277 0.90769 1.66077 1.14029 1.12341 1.27697 0.93009 0.90904 0.91948 0.84345 0.90610 0.92000 0.93721 0.92942 0.93649 0.99314 0.93482 0.92739 0.95265 0.94409 0.94126 0.78866 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 9.38 71.98 0.68 -2.25 16 2 C 0.15 4.20 2.77 44.17 0.12 4.32 16 3 H 0.06 1.56 7.11 -2.38 -0.02 1.55 16 4 N -0.67 -21.96 5.88 -473.28 -2.78 -24.74 16 5 C 0.11 3.75 2.28 44.91 0.10 3.85 16 6 C -0.08 -3.19 5.30 30.59 0.16 -3.03 16 7 C -0.10 -4.17 5.41 30.60 0.17 -4.00 16 8 C 0.04 1.91 2.59 -11.54 -0.03 1.88 16 9 C -0.50 -27.45 6.61 25.60 0.17 -27.28 16 10 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 11 C 0.01 0.78 5.30 84.66 0.45 1.23 16 12 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 13 Si 0.94 44.58 29.54 68.60 2.03 46.61 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 17 C -0.10 -4.66 5.24 30.61 0.16 -4.50 16 18 C -0.11 -4.73 4.94 30.61 0.15 -4.58 16 19 C 0.05 1.21 5.59 41.52 0.23 1.45 16 20 C -0.26 -5.22 11.14 66.78 0.74 -4.48 16 21 S 0.16 2.49 23.22 -56.49 -1.31 1.18 16 22 C 0.01 0.24 12.23 130.65 1.60 1.84 16 23 N -0.49 -13.12 9.76 -191.55 -1.87 -14.99 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.45 7.43 -2.38 -0.02 1.43 16 27 H 0.34 12.23 7.69 -89.69 -0.69 11.54 16 28 H 0.08 2.53 7.11 -2.39 -0.02 2.51 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.04 1.93 6.62 -2.39 -0.02 1.91 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.46 7.43 -2.39 -0.02 1.44 16 38 H 0.04 1.94 7.21 -2.39 -0.02 1.92 16 39 H 0.19 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.22 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -62.89 324.60 1.35 -61.54 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.34 Total: 19.42 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.70 Total: -35.56 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.41 Total: -93.19 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.18 kcal Total: -62.89 1.35 -61.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.185 kcal (2) G-P(sol) polarization free energy of solvation -62.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds