Wall clock time and date at job start Tue Mar 31 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46899 * 109.47071 * 120.00135 * 2 1 3 5 5 C 1.46896 * 110.99850 * 275.00148 * 4 2 1 6 6 C 1.53002 * 109.46966 * 274.99585 * 5 4 2 7 7 C 1.52996 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47404 * 60.00430 * 7 6 5 9 9 C 1.50702 * 109.47734 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00510 * 119.99337 * 9 8 7 11 11 C 1.37885 * 119.99667 * 300.00019 * 9 8 7 12 12 N 1.31514 * 119.99864 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99906 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47167 * 90.00144 * 13 11 9 15 15 H 1.48497 * 109.46980 * 210.00135 * 13 11 9 16 16 H 1.48496 * 109.47007 * 329.99863 * 13 11 9 17 17 C 1.53007 * 109.47030 * 299.99847 * 8 7 6 18 18 C 1.52996 * 109.46902 * 59.99845 * 17 8 7 19 19 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 20 20 C 1.33635 * 122.74806 * 85.00520 * 19 2 1 21 21 S 1.76201 * 107.92337 * 179.97438 * 20 19 2 22 22 C 1.70972 * 90.28069 * 359.97438 * 21 20 19 23 23 N 1.29032 * 110.17047 * 359.73377 * 22 21 20 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.00908 * 110.99789 * 38.95445 * 4 2 1 28 28 H 1.08998 * 109.47328 * 34.99951 * 5 4 2 29 29 H 1.08998 * 109.47395 * 300.00325 * 6 5 4 30 30 H 1.08999 * 109.46555 * 60.00452 * 6 5 4 31 31 H 1.09004 * 109.47347 * 299.99897 * 7 6 5 32 32 H 1.08999 * 109.47279 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.47303 * 59.99441 * 8 7 6 34 34 H 0.96997 * 119.99498 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.46746 * 299.99936 * 17 8 7 36 36 H 1.09003 * 109.46802 * 180.02562 * 17 8 7 37 37 H 1.09000 * 109.46755 * 180.02562 * 18 17 8 38 38 H 1.08998 * 109.47368 * 60.00007 * 18 17 8 39 39 H 1.08003 * 126.04211 * 359.97438 * 20 19 2 40 40 H 1.08004 * 124.91651 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2225 2.3468 6 6 3.4111 0.9808 2.3224 7 6 3.4762 1.9343 3.5171 8 6 3.3704 1.1326 4.8159 9 6 3.4351 2.0717 5.9927 10 1 2.6109 2.1230 6.6887 11 6 4.5467 2.8655 6.1809 12 7 5.5506 2.8027 5.3337 13 14 4.6267 4.0301 7.6393 14 1 5.2370 3.3307 8.7983 15 1 5.4520 5.2123 7.2839 16 1 3.2546 4.4730 7.9948 17 6 2.0417 0.3743 4.8404 18 6 1.9767 -0.5793 3.6457 19 6 2.0323 -0.7105 -1.2305 20 6 2.1810 -0.0979 -2.4089 21 16 2.7865 -1.2831 -3.5636 22 6 2.7801 -2.4842 -2.3468 23 7 2.3676 -1.9849 -1.2309 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4980 1.4100 28 1 1.2576 0.9329 2.2906 29 1 4.2359 0.2704 2.3786 30 1 3.4862 1.5523 1.3973 31 1 2.6513 2.6447 3.4604 32 1 4.4225 2.4748 3.4995 33 1 4.1953 0.4222 4.8726 34 1 6.3324 3.3615 5.4659 35 1 1.2169 1.0846 4.7837 36 1 1.9662 -0.1966 5.7659 37 1 1.0299 -1.1191 3.6629 38 1 2.8015 -1.2896 3.7023 39 1 1.9678 0.9403 -2.6167 40 1 3.0826 -3.5111 -2.4903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:42 Heat of formation + Delta-G solvation = 8.183265 kcal Electronic energy + Delta-G solvation = -19809.767095 eV Core-core repulsion = 16942.519088 eV Total energy + Delta-G solvation = -2867.248007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94237 -39.60257 -36.81903 -34.55810 -32.33954 -31.39129 -30.38526 -28.80491 -26.57258 -25.79439 -23.94400 -23.10563 -21.88722 -20.54865 -20.20259 -18.74712 -18.37721 -17.14577 -16.58412 -16.09194 -15.81633 -15.58356 -15.20842 -14.76453 -14.63311 -14.53274 -14.12198 -13.98565 -13.79917 -13.31237 -13.10023 -12.88735 -12.84570 -12.60770 -12.45978 -12.27278 -12.04733 -11.88394 -11.79059 -11.69114 -11.15663 -10.72225 -10.50030 -10.44232 -10.34538 -10.30329 -9.68336 -9.21004 -8.05017 -6.19491 -0.11502 0.59408 0.87290 1.41475 1.41878 1.52237 1.95921 2.44838 3.18560 3.23106 3.41533 3.95046 4.00860 4.14497 4.22796 4.32446 4.44539 4.48331 4.58802 4.61324 4.68523 4.77759 4.84959 4.89401 4.91777 4.99938 5.06129 5.13931 5.20092 5.30000 5.36451 5.45244 5.51999 5.63974 5.73171 6.06528 6.18334 6.24426 6.43896 6.60211 6.94047 6.96738 7.48485 8.98812 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.003434 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.402578 B = 8152.446005 C = 8492.536062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 H 0.086 0.914 4 N -0.674 5.674 5 C 0.105 3.895 6 C -0.089 4.089 7 C -0.099 4.099 8 C 0.045 3.955 9 C -0.534 4.534 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.918 5.918 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.267 1.267 17 C -0.098 4.098 18 C -0.106 4.106 19 C 0.067 3.933 20 C -0.269 4.269 21 S 0.145 5.855 22 C 0.011 3.989 23 N -0.480 5.480 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.347 0.653 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.055 0.945 33 H -0.012 1.012 34 H 0.259 0.741 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.191 0.809 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -7.865 -18.538 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.306 5.306 5 C -0.004 4.004 6 C -0.128 4.128 7 C -0.138 4.138 8 C 0.027 3.973 9 C -0.573 4.573 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.557 5.557 13 Si 0.778 3.222 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.066 4.066 20 C -0.408 4.408 21 S 0.397 5.603 22 C -0.287 4.287 23 N -0.193 5.193 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.006 0.994 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.208 0.792 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.446 -8.090 -19.329 22.592 hybrid contribution -0.558 1.208 1.867 2.293 sum -9.004 -6.882 -17.462 20.817 Atomic orbital electron populations 1.22383 0.94476 1.02553 1.03152 1.20094 0.93576 0.96003 0.86199 0.89566 1.60307 1.58037 1.09332 1.02887 1.21341 0.96240 0.93426 0.89415 1.21423 0.96972 0.97274 0.97092 1.21387 1.00473 0.97426 0.94471 1.18625 0.92325 0.93287 0.93109 1.21650 1.02478 1.22696 1.10432 0.93013 1.25766 0.95459 0.98750 0.98828 1.70044 1.07175 1.40976 1.37540 0.85644 0.78174 0.78560 0.79810 1.20314 1.20955 1.19167 1.21454 0.98206 0.97309 0.96660 1.21600 1.01451 0.97625 0.93763 1.20352 1.01178 0.89444 0.95589 1.27059 1.11309 1.06199 0.96239 1.83748 1.59490 1.01603 1.15423 1.28962 1.02969 1.06054 0.90740 1.66073 1.13776 1.12585 1.26908 0.91771 0.90669 0.92284 0.83297 0.93695 0.94525 0.93593 0.95303 0.92681 0.99414 0.93216 0.93110 0.93454 0.90688 0.92932 0.79177 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 9.13 71.98 0.66 -2.70 16 2 C 0.15 3.87 2.74 44.17 0.12 3.99 16 3 H 0.09 2.26 7.11 -2.39 -0.02 2.25 16 4 N -0.67 -19.84 5.74 -473.30 -2.72 -22.56 16 5 C 0.11 3.51 2.30 44.92 0.10 3.62 16 6 C -0.09 -3.64 5.41 30.59 0.17 -3.48 16 7 C -0.10 -4.83 4.98 30.59 0.15 -4.68 16 8 C 0.04 2.32 2.10 -11.54 -0.02 2.29 16 9 C -0.53 -30.20 8.56 25.60 0.22 -29.98 16 10 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 11 C 0.01 0.58 5.30 84.66 0.45 1.03 16 12 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 13 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C -0.10 -4.08 5.14 30.60 0.16 -3.92 16 18 C -0.11 -3.67 5.20 30.59 0.16 -3.51 16 19 C 0.07 1.64 5.81 41.52 0.24 1.88 16 20 C -0.27 -5.28 11.14 66.77 0.74 -4.54 16 21 S 0.15 2.26 23.22 -56.49 -1.31 0.95 16 22 C 0.01 0.20 12.23 130.65 1.60 1.79 16 23 N -0.48 -12.23 10.13 -191.55 -1.94 -14.17 16 24 H 0.06 1.30 7.43 -2.39 -0.02 1.29 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.35 9.58 8.09 -89.69 -0.73 8.86 16 28 H 0.05 1.46 7.11 -2.39 -0.02 1.44 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 31 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.05 3.08 6.07 -2.39 -0.01 3.07 16 33 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.35 329.96 1.34 -64.02 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.30 Total: 17.82 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.74 Total: -38.20 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.42 Total: -91.08 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -65.35 1.34 -64.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.199 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds