Wall clock time and date at job start Tue Mar 31 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46907 * 2 1 4 4 N 1.46903 * 109.46769 * 120.00048 * 2 1 3 5 5 C 1.46896 * 111.00108 * 273.18773 * 4 2 1 6 6 C 1.53003 * 109.47417 * 274.56639 * 5 4 2 7 7 C 1.52991 * 109.47125 * 300.00074 * 6 5 4 8 8 C 1.53003 * 109.47262 * 300.00109 * 7 6 5 9 9 C 1.50704 * 109.47221 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99901 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99803 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99473 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00180 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47200 * 89.99588 * 13 11 9 15 15 H 1.48496 * 109.47053 * 209.99589 * 13 11 9 16 16 H 1.48496 * 109.47056 * 329.99699 * 13 11 9 17 17 C 1.52991 * 109.47288 * 59.99655 * 8 7 6 18 18 C 1.52998 * 109.47210 * 154.56443 * 5 4 2 19 19 C 1.50702 * 109.47324 * 239.99989 * 2 1 3 20 20 N 1.29023 * 124.91538 * 284.69965 * 19 2 1 21 21 C 1.31786 * 117.12299 * 179.81079 * 20 19 2 22 22 C 1.33638 * 114.49734 * 0.47508 * 21 20 19 23 23 S 1.70971 * 124.91471 * 104.99804 * 19 2 1 24 24 H 1.09001 * 109.46821 * 185.04954 * 1 2 3 25 25 H 1.09002 * 109.47261 * 305.05091 * 1 2 3 26 26 H 1.09002 * 109.46825 * 65.05358 * 1 2 3 27 27 H 1.00899 * 111.00341 * 37.15096 * 4 2 1 28 28 H 1.08997 * 109.47159 * 34.56789 * 5 4 2 29 29 H 1.08996 * 109.47104 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.46505 * 59.99884 * 6 5 4 31 31 H 1.09006 * 109.47281 * 59.99985 * 7 6 5 32 32 H 1.08997 * 109.47324 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.46631 * 299.99634 * 8 7 6 34 34 H 0.97010 * 119.99379 * 180.02562 * 12 11 9 35 35 H 1.08999 * 109.47322 * 180.02562 * 17 8 7 36 36 H 1.09006 * 109.46780 * 60.00415 * 17 8 7 37 37 H 1.08996 * 109.47306 * 180.02562 * 18 5 4 38 38 H 1.08997 * 109.47426 * 300.00496 * 18 5 4 39 39 H 1.08001 * 122.75175 * 180.22389 * 21 20 19 40 40 H 1.08004 * 126.03370 * 179.72386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1232 0.2324 2.3360 6 6 3.4748 0.9478 2.2899 7 6 4.6012 -0.0846 2.3683 8 6 4.4837 -0.8692 3.6766 9 6 5.5936 -1.8857 3.7542 10 1 6.3108 -1.9645 2.9505 11 6 5.6935 -2.7150 4.8511 12 7 6.6617 -3.6024 4.9185 13 14 4.4527 -2.5791 6.2408 14 1 3.3068 -3.4844 5.9717 15 1 5.0988 -2.9654 7.5208 16 1 3.9660 -1.1792 6.3347 17 6 3.1322 -1.5845 3.7228 18 6 2.0057 -0.5521 3.6443 19 6 2.0324 -0.7104 -1.2305 20 7 2.0255 -1.9895 -1.3992 21 6 2.5000 -2.4476 -2.5402 22 6 2.9403 -1.5027 -3.3765 23 16 2.7007 0.0615 -2.6018 24 1 -0.3633 -1.0237 0.0905 25 1 -0.3634 0.5902 0.8413 26 1 -0.3633 0.4335 -0.9318 27 1 1.4323 -1.4808 1.4270 28 1 1.3207 0.9679 2.2801 29 1 3.5514 1.6344 3.1329 30 1 3.5584 1.5066 1.3578 31 1 4.5244 -0.7709 1.5250 32 1 5.5641 0.4251 2.3360 33 1 4.5606 -0.1828 4.5200 34 1 6.7318 -4.1861 5.6901 35 1 3.0483 -2.1431 4.6550 36 1 3.0554 -2.2708 2.8794 37 1 2.0821 0.1343 4.4876 38 1 1.0428 -1.0617 3.6772 39 1 2.5341 -3.5005 -2.7782 40 1 3.3679 -1.6688 -4.3542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:04 Heat of formation + Delta-G solvation = 37.063626 kcal Electronic energy + Delta-G solvation = -20348.097997 eV Core-core repulsion = 17482.102337 eV Total energy + Delta-G solvation = -2865.995661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76064 -38.58414 -35.58544 -32.66638 -30.90234 -30.05926 -29.40889 -27.86462 -25.64096 -24.25707 -22.60767 -21.75198 -20.53998 -19.53143 -18.34909 -17.98127 -16.50967 -15.94744 -15.23427 -15.12222 -14.87826 -14.24176 -14.22289 -13.51029 -13.30699 -13.04643 -12.90643 -12.83409 -12.46782 -12.16279 -11.68147 -11.60674 -11.49843 -11.39291 -11.21271 -10.87166 -10.65492 -10.32341 -9.89419 -9.72903 -9.53504 -9.35642 -9.32940 -8.88852 -8.82046 -8.76026 -8.38257 -8.07848 -5.93961 -3.90613 0.75962 1.37517 1.76640 2.93939 3.35597 3.44899 3.48093 4.16513 4.35788 4.52547 4.81974 4.97708 5.14276 5.18579 5.28303 5.33813 5.39546 5.49294 5.52275 5.56520 5.65325 5.93372 6.02362 6.11556 6.19008 6.21885 6.24206 6.36395 6.50346 6.61263 6.72284 6.99054 7.21413 7.22485 7.27273 7.50120 7.65481 7.82384 7.86315 7.95125 8.69959 9.12320 9.70005 11.19999 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.005070 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.853498 B = 5520.918123 C = 6041.184867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.160 3.840 3 H 0.095 0.905 4 N -0.657 5.657 5 C 0.096 3.904 6 C -0.108 4.108 7 C -0.088 4.088 8 C 0.018 3.982 9 C -0.503 4.503 10 H 0.070 0.930 11 C 0.065 3.935 12 N -0.907 5.907 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.301 1.301 16 H -0.267 1.267 17 C -0.112 4.112 18 C -0.123 4.123 19 C 0.080 3.920 20 N -0.459 5.459 21 C 0.044 3.956 22 C -0.267 4.267 23 S 0.101 5.899 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.351 0.649 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.173 0.827 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 9.147 -13.907 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.046 3.954 3 H 0.113 0.887 4 N -0.290 5.290 5 C -0.013 4.013 6 C -0.146 4.146 7 C -0.126 4.126 8 C -0.001 4.001 9 C -0.541 4.541 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.546 5.546 13 Si 0.721 3.279 14 H -0.209 1.209 15 H -0.230 1.230 16 H -0.192 1.192 17 C -0.150 4.150 18 C -0.161 4.161 19 C -0.199 4.199 20 N -0.172 5.172 21 C -0.107 4.107 22 C -0.407 4.407 23 S 0.354 5.646 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.190 0.810 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.656 9.756 -13.823 21.129 hybrid contribution -1.382 -1.037 0.712 1.869 sum -14.037 8.719 -13.111 21.094 Atomic orbital electron populations 1.22480 0.95335 1.03157 1.02423 1.20057 0.92754 0.96077 0.86515 0.88699 1.60283 1.56226 1.09987 1.02495 1.21507 0.96848 0.93177 0.89814 1.21613 0.95365 0.97887 0.99747 1.21282 0.94857 0.96518 0.99953 1.19091 0.92515 0.94889 0.93616 1.21118 1.11128 1.16532 1.05344 0.91144 1.25037 0.95364 0.95068 0.98025 1.69920 1.32455 1.21981 1.30282 0.86809 0.81066 0.78746 0.81284 1.20851 1.22954 1.19192 1.21878 0.95334 0.97250 1.00521 1.21804 0.99219 0.99115 0.95992 1.27146 1.00907 0.92282 0.99610 1.66152 1.18333 1.12176 1.20536 1.21859 0.98875 1.01387 0.88591 1.26987 1.12441 0.94587 1.06640 1.83904 1.57397 1.11258 1.11991 0.91437 0.91570 0.92098 0.82854 0.94751 0.92619 0.93627 0.91428 0.93876 0.96367 0.92961 0.94299 0.91245 0.91995 0.93367 0.80977 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.16 37.16 0.34 -1.38 16 2 C 0.16 1.95 2.89 -68.86 -0.20 1.75 16 3 H 0.10 1.08 7.14 -51.93 -0.37 0.70 16 4 N -0.66 -9.67 4.54 -100.95 -0.46 -10.13 16 5 C 0.10 1.41 2.63 -67.71 -0.18 1.23 16 6 C -0.11 -1.75 5.52 -26.73 -0.15 -1.90 16 7 C -0.09 -1.83 4.98 -26.73 -0.13 -1.96 16 8 C 0.02 0.42 1.69 -91.77 -0.16 0.27 16 9 C -0.50 -14.59 9.14 -34.44 -0.31 -14.90 16 10 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 11 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 12 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 13 Si 0.89 22.72 24.37 -169.99 -4.14 18.58 16 14 H -0.28 -7.02 6.87 56.52 0.39 -6.63 16 15 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 16 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 17 C -0.11 -2.43 4.52 -26.73 -0.12 -2.55 16 18 C -0.12 -2.07 5.30 -26.73 -0.14 -2.21 16 19 C 0.08 1.06 6.25 -13.46 -0.08 0.98 16 20 N -0.46 -6.75 10.50 -11.86 -0.12 -6.88 16 21 C 0.04 0.55 11.35 -19.18 -0.22 0.33 16 22 C -0.27 -2.87 11.37 29.12 0.33 -2.54 16 23 S 0.10 1.12 23.18 -107.50 -2.49 -1.38 16 24 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 25 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.35 5.23 7.81 -39.29 -0.31 4.93 16 28 H 0.03 0.43 7.29 -51.93 -0.38 0.06 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.66 7.48 -51.93 -0.39 0.28 16 31 H 0.07 1.50 7.60 -51.93 -0.39 1.10 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 36 H 0.07 1.56 7.47 -51.93 -0.39 1.17 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -32.17 321.34 -8.86 -41.03 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.14 Total: 2.90 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.12 Total: -21.04 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.19 Total: -44.94 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.17 -8.86 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.098 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds