Wall clock time and date at job start Tue Mar 31 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 C 1.53000 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00023 * 89.97937 * 5 4 3 7 7 H 1.07994 * 120.00017 * 218.68285 * 6 5 4 8 8 C 1.38953 * 119.99734 * 38.67630 * 6 5 4 9 9 N 1.31415 * 119.99644 * 214.66201 * 8 6 5 10 10 Si 1.86798 * 120.00142 * 34.66755 * 8 6 5 11 11 H 1.48497 * 109.47361 * 84.90193 * 10 8 6 12 12 H 1.48502 * 109.46831 * 204.90329 * 10 8 6 13 13 H 1.48494 * 109.47049 * 324.90301 * 10 8 6 14 14 C 1.34779 * 119.99705 * 269.69895 * 5 4 3 15 15 O 1.21291 * 120.00376 * 5.21656 * 14 5 4 16 16 C 1.50701 * 119.99692 * 185.22016 * 14 5 4 17 17 C 1.50696 * 109.47191 * 184.63777 * 16 14 5 18 18 C 1.38231 * 120.40712 * 273.32985 * 17 16 14 19 19 N 1.31845 * 120.82096 * 179.68254 * 18 17 16 20 20 C 1.31862 * 121.75143 * 0.62377 * 19 18 17 21 21 C 1.38428 * 120.72785 * 359.66300 * 20 19 18 22 22 F 1.35100 * 120.44666 * 179.97438 * 21 20 19 23 23 C 1.38590 * 120.40540 * 93.60101 * 17 16 14 24 24 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46995 * 299.99702 * 1 2 3 26 26 H 1.09001 * 109.47417 * 59.99975 * 1 2 3 27 27 H 1.09006 * 109.47004 * 239.99744 * 2 1 3 28 28 H 1.09004 * 109.47381 * 120.00803 * 2 1 3 29 29 H 1.09005 * 109.46872 * 60.00223 * 3 2 1 30 30 H 1.09001 * 109.46925 * 300.00326 * 3 2 1 31 31 H 1.09005 * 109.46995 * 60.00298 * 4 3 2 32 32 H 1.08996 * 109.47497 * 300.00479 * 4 3 2 33 33 H 0.97003 * 119.99666 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47167 * 304.63706 * 16 14 5 35 35 H 1.09004 * 109.47101 * 64.63541 * 16 14 5 36 36 H 1.08006 * 119.58957 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.64110 * 179.68278 * 20 19 18 38 38 H 1.08000 * 120.79897 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2859 3.4698 1.1889 7 1 4.0355 4.5153 1.2914 8 6 4.8387 2.7793 2.2605 9 7 4.4712 3.0689 3.4886 10 14 6.1043 1.4397 1.9557 11 1 7.4525 2.0505 1.8351 12 1 6.0945 0.4820 3.0906 13 1 5.7721 0.7216 0.6991 14 6 4.2892 3.4573 -1.1657 15 8 4.0039 2.9194 -2.2147 16 6 4.9020 4.8341 -1.1671 17 6 4.9491 5.3616 -2.5780 18 6 6.0212 5.0674 -3.3994 19 7 6.0678 5.5194 -4.6371 20 6 5.1091 6.2745 -5.1367 21 6 4.0067 6.6157 -4.3723 22 9 3.0280 7.3901 -4.8897 23 6 3.9207 6.1521 -3.0660 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 4.8574 2.5872 4.2367 34 1 4.2994 5.5006 -0.5500 35 1 5.9137 4.7820 -0.7647 36 1 6.8285 4.4558 -3.0243 37 1 5.1847 6.6303 -6.1536 38 1 3.0725 6.4013 -2.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177383920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:28 Heat of formation + Delta-G solvation = -68.232410 kcal Electronic energy + Delta-G solvation = -21729.227474 eV Core-core repulsion = 18292.452659 eV Total energy + Delta-G solvation = -3436.774815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.00738 -41.37717 -40.34130 -37.28242 -35.60179 -34.58516 -33.85841 -32.38791 -30.50037 -28.68572 -26.71913 -25.00965 -24.66885 -23.24950 -22.08444 -20.89570 -18.92338 -18.35859 -18.13421 -17.94018 -17.78566 -17.00162 -16.80202 -16.21187 -15.98343 -15.72097 -14.97574 -14.68133 -14.61381 -14.51176 -14.38665 -14.09732 -14.02151 -13.77896 -13.38946 -13.24992 -13.03539 -12.75757 -12.63687 -12.15483 -12.12959 -11.92396 -11.69981 -11.40293 -11.04291 -10.84707 -10.67495 -10.40839 -9.85523 -9.67421 -8.58911 -6.05741 -0.09677 0.06325 1.26671 1.38731 1.45739 1.90443 2.23195 2.46138 2.70932 2.96006 3.06641 3.42725 3.65721 3.74807 3.92536 3.99090 4.07446 4.18620 4.24907 4.30989 4.42049 4.52040 4.66246 4.74056 4.80100 4.84087 4.88850 4.93507 4.94409 5.06957 5.15262 5.24933 5.36713 5.41293 5.50825 5.61267 6.09918 6.28622 6.77379 6.99637 7.45899 7.84205 8.55002 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.005336 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.346722 B = 5246.044676 C = 6225.498286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.110 3.890 5 N -0.464 5.464 6 C -0.362 4.362 7 H 0.086 0.914 8 C 0.053 3.947 9 N -0.868 5.868 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.253 1.253 14 C 0.473 3.527 15 O -0.618 6.618 16 C -0.076 4.076 17 C -0.080 4.080 18 C 0.095 3.905 19 N -0.472 5.472 20 C 0.066 3.934 21 C 0.043 3.957 22 F -0.132 7.132 23 C -0.109 4.109 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.281 0.719 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.194 0.806 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 1.627 -8.116 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.155 4.155 4 C -0.013 4.013 5 N -0.184 5.184 6 C -0.489 4.489 7 H 0.103 0.897 8 C -0.156 4.156 9 N -0.502 5.502 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.177 1.177 14 C 0.263 3.737 15 O -0.504 6.504 16 C -0.116 4.116 17 C -0.082 4.082 18 C -0.061 4.061 19 N -0.180 5.180 20 C -0.092 4.092 21 C 0.021 3.979 22 F -0.111 7.111 23 C -0.135 4.135 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.188 0.812 37 H 0.211 0.789 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.239 1.138 -8.919 8.995 hybrid contribution -0.352 -0.125 0.984 1.052 sum -0.591 1.013 -7.936 8.022 Atomic orbital electron populations 1.21715 0.94436 1.02356 1.01681 1.21469 0.97132 0.95099 1.02067 1.21749 0.94887 0.97979 1.00874 1.21725 0.94888 0.84293 1.00398 1.43788 1.56830 1.12577 1.05207 1.18786 1.44870 0.97629 0.87565 0.89665 1.25740 0.96978 0.98668 0.94180 1.70019 1.37673 1.42366 1.00130 0.86676 0.81679 0.80465 0.79117 1.19626 1.20488 1.17722 1.20807 0.80851 0.89073 0.82937 1.90559 1.57673 1.69885 1.32321 1.20367 1.04653 0.93950 0.92603 1.20472 0.94575 0.95963 0.97196 1.22898 0.97847 0.96523 0.88853 1.67758 1.27274 1.09249 1.13689 1.23269 0.88556 0.95840 1.01573 1.18783 0.89057 0.96407 0.93629 1.91502 1.60518 1.72368 1.86689 1.21727 0.99789 0.97226 0.94764 0.91015 0.92936 0.92952 0.91730 0.91791 0.92885 0.93490 0.92259 0.91997 0.90951 0.87578 0.86401 0.81248 0.78943 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.12 -4.41 5.54 30.59 0.17 -4.24 16 4 C 0.11 4.65 3.84 86.38 0.33 4.98 16 5 N -0.46 -20.81 2.12 -635.53 -1.35 -22.16 16 6 C -0.36 -17.33 8.85 84.04 0.74 -16.59 16 7 H 0.09 4.27 7.17 -2.91 -0.02 4.24 16 8 C 0.05 2.56 5.01 84.93 0.43 2.98 16 9 N -0.87 -44.66 13.96 21.66 0.30 -44.36 16 10 Si 0.90 37.90 26.60 68.60 1.82 39.72 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 13 H -0.25 -10.54 5.74 99.48 0.57 -9.97 16 14 C 0.47 20.18 7.61 87.66 0.67 20.84 16 15 O -0.62 -29.10 15.67 -3.07 -0.05 -29.15 16 16 C -0.08 -2.60 4.74 29.10 0.14 -2.46 16 17 C -0.08 -2.53 4.39 -19.78 -0.09 -2.62 16 18 C 0.10 2.93 10.87 84.69 0.92 3.85 16 19 N -0.47 -14.06 10.36 -195.66 -2.03 -16.08 16 20 C 0.07 1.71 11.17 84.73 0.95 2.66 16 21 C 0.04 1.17 7.35 22.47 0.17 1.34 16 22 F -0.13 -3.47 17.28 44.97 0.78 -2.69 16 23 C -0.11 -3.22 9.83 22.51 0.22 -3.00 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 2.53 7.49 -2.38 -0.02 2.51 16 32 H 0.06 2.63 4.52 -2.39 -0.01 2.62 16 33 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.11 3.49 7.27 -2.39 -0.02 3.47 16 35 H 0.12 3.73 8.11 -2.38 -0.02 3.71 16 36 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -57.37 325.04 5.94 -51.43 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.92 Total: 21.90 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.54 Total: 1.39 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.07 Total: -82.60 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.82 Total: 39.72 kcal Total: -57.37 5.94 -51.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177383920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.802 kcal (2) G-P(sol) polarization free energy of solvation -57.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds