Wall clock time and date at job start Tue Mar 31 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21582 * 120.00442 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99402 * 180.02562 * 14 13 3 17 17 C 1.46510 * 119.99489 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.46859 * 179.97438 * 17 16 14 19 19 C 1.38250 * 119.97375 * 269.72595 * 18 17 16 20 20 C 1.38206 * 120.02069 * 179.72904 * 19 18 17 21 21 C 1.38457 * 119.97560 * 0.56732 * 20 19 18 22 22 F 1.35095 * 120.02414 * 179.68485 * 21 20 19 23 23 C 1.38462 * 119.94901 * 359.70439 * 21 20 19 24 24 C 1.38191 * 119.97184 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 26 26 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 32 32 H 0.97001 * 120.00477 * 359.97438 * 16 14 13 33 33 H 1.08994 * 109.47135 * 299.99890 * 17 16 14 34 34 H 1.09000 * 109.46976 * 59.99683 * 17 16 14 35 35 H 1.07990 * 119.98837 * 359.97438 * 19 18 17 36 36 H 1.08002 * 120.00856 * 180.25515 * 20 19 18 37 37 H 1.08000 * 120.00854 * 179.97438 * 23 21 20 38 38 H 1.08004 * 119.98398 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3412 2.6325 0.4320 16 7 0.0789 3.2672 2.5186 17 6 -1.2442 3.8838 2.6437 18 6 -1.3910 4.4834 4.0184 19 6 -1.9082 3.7240 5.0515 20 6 -2.0381 4.2711 6.3140 21 6 -1.6610 5.5838 6.5412 22 9 -1.7934 6.1215 7.7734 23 6 -1.1484 6.3451 5.5044 24 6 -1.0142 5.7942 4.2442 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 2.2720 2.1230 1.9979 32 1 0.6984 3.2928 3.2646 33 1 -1.3530 4.6659 1.8923 34 1 -2.0137 3.1265 2.4938 35 1 -2.2071 2.7018 4.8728 36 1 -2.4383 3.6764 7.1218 37 1 -0.8543 7.3692 5.6805 38 1 -0.6148 6.3879 3.4353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185489499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:23 Heat of formation + Delta-G solvation = -51.448324 kcal Electronic energy + Delta-G solvation = -21191.889486 eV Core-core repulsion = 17755.842483 eV Total energy + Delta-G solvation = -3436.047003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.19802 -39.88105 -39.07164 -35.75183 -34.32335 -32.40775 -31.72394 -31.47817 -30.51512 -27.52606 -25.69110 -23.38394 -22.65652 -21.79453 -20.95133 -19.74517 -18.36613 -17.95632 -16.71437 -16.52275 -16.10880 -15.87348 -15.44855 -15.21446 -14.70788 -14.35159 -13.94817 -13.87013 -13.75669 -13.29205 -13.13669 -12.74809 -12.54443 -12.19655 -11.87673 -11.78421 -11.69363 -11.32071 -11.04958 -10.85858 -10.60100 -9.89528 -9.67206 -9.45107 -9.39521 -9.18028 -8.92468 -8.80284 -8.70780 -7.94726 -6.19124 -4.21143 0.72264 0.89694 3.04783 3.25557 3.37397 3.43219 3.56519 3.83595 3.92913 4.33786 4.39071 4.42679 4.57238 4.93536 4.94214 4.98529 5.14992 5.42785 5.56874 5.62535 5.77217 5.78138 5.87914 6.02646 6.07593 6.22657 6.23338 6.53396 6.66754 6.72490 6.75817 6.88029 7.01554 7.20319 7.38672 7.57753 7.61703 8.32479 8.72961 8.83060 9.24449 9.43638 10.93023 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035106 B = 0.003271 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.389271 B = 8558.740935 C = 8901.626974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.260 3.740 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.259 1.259 12 H -0.295 1.295 13 N -0.718 5.718 14 C 0.697 3.303 15 O -0.596 6.596 16 N -0.754 5.754 17 C 0.183 3.817 18 C -0.112 4.112 19 C -0.071 4.071 20 C -0.157 4.157 21 C 0.100 3.900 22 F -0.141 7.141 23 C -0.156 4.156 24 C -0.070 4.070 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.267 0.733 31 H 0.390 0.610 32 H 0.393 0.607 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 7.189 14.391 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.156 3.844 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.184 1.184 12 H -0.222 1.222 13 N -0.369 5.369 14 C 0.397 3.603 15 O -0.475 6.475 16 N -0.412 5.412 17 C 0.059 3.941 18 C -0.113 4.113 19 C -0.089 4.089 20 C -0.175 4.175 21 C 0.081 3.919 22 F -0.120 7.120 23 C -0.175 4.175 24 C -0.089 4.089 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.226 0.774 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.596 7.112 13.401 21.052 hybrid contribution 0.202 -0.361 0.301 0.512 sum -14.393 6.751 13.703 20.988 Atomic orbital electron populations 1.21843 0.96904 0.98717 1.02356 1.22306 0.94444 1.00160 1.00909 1.19007 0.95215 0.88123 0.82066 0.93370 1.21070 0.88737 1.39622 1.07763 0.90278 1.24830 0.94864 0.95180 0.97683 1.69870 1.08706 1.44650 1.29835 0.86897 0.81010 0.79946 0.80836 1.20271 1.18368 1.22241 1.45398 1.13852 1.59165 1.18506 1.16055 0.83164 0.78591 0.82506 1.90883 1.52403 1.65531 1.38671 1.45194 1.17442 1.62678 1.15857 1.19888 0.85217 0.97236 0.91773 1.20079 1.00754 0.94459 0.95997 1.21025 0.96670 1.00028 0.91221 1.21168 1.03533 0.94047 0.98797 1.17793 1.01203 0.92675 0.80238 1.91503 1.93725 1.86292 1.40454 1.21176 1.02664 1.01017 0.92630 1.21041 0.96811 0.94671 0.96357 0.92843 0.92928 0.95261 0.92906 0.92441 0.92320 0.77701 0.77352 0.90834 0.90902 0.84635 0.84621 0.84584 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.24 16 3 C 0.26 6.14 1.83 -69.08 -0.13 6.01 16 4 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.36 9.31 -34.44 -0.32 -14.68 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 9 Si 0.88 21.77 24.41 -169.99 -4.15 17.62 16 10 H -0.28 -6.59 6.83 56.52 0.39 -6.20 16 11 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.72 -13.99 5.03 -59.81 -0.30 -14.29 16 14 C 0.70 12.79 7.13 -86.91 -0.62 12.17 16 15 O -0.60 -12.98 13.48 5.29 0.07 -12.91 16 16 N -0.75 -10.02 5.55 -66.41 -0.37 -10.38 16 17 C 0.18 2.07 5.80 -5.19 -0.03 2.04 16 18 C -0.11 -1.02 5.25 -104.62 -0.55 -1.57 16 19 C -0.07 -0.59 9.70 -39.59 -0.38 -0.97 16 20 C -0.16 -1.29 10.03 -39.51 -0.40 -1.69 16 21 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 22 F -0.14 -1.41 17.27 2.25 0.04 -1.38 16 23 C -0.16 -1.31 10.03 -39.52 -0.40 -1.70 16 24 C -0.07 -0.60 9.70 -39.60 -0.38 -0.98 16 25 H 0.05 1.06 5.64 -51.93 -0.29 0.77 16 26 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.24 3.22 -51.93 -0.17 1.07 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.39 6.73 8.55 -40.82 -0.35 6.38 16 32 H 0.39 4.37 8.48 -40.82 -0.35 4.03 16 33 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -31.58 316.65 -7.46 -39.04 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.89 Total: 7.65 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.41 Total: -4.44 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.10 Total: -50.35 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.58 -7.46 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185489499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.408 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds