Wall clock time and date at job start Tue Mar 31 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 C 1.52993 * 109.47383 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47392 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00515 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99445 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00279 * 179.97438 * 6 5 4 9 9 C 1.40027 * 119.99939 * 175.68502 * 8 6 5 10 10 C 1.39365 * 119.91253 * 215.21678 * 9 8 6 11 11 C 1.38364 * 120.47229 * 180.02562 * 10 9 8 12 12 C 1.38009 * 120.28835 * 359.97438 * 11 10 9 13 13 F 1.35098 * 120.09555 * 179.97438 * 12 11 10 14 14 C 1.41007 * 119.80720 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.22610 * 179.97438 * 14 12 11 16 16 H 1.07991 * 120.00394 * 324.96541 * 15 14 12 17 17 C 1.39925 * 119.99692 * 145.23544 * 15 14 12 18 18 N 1.30846 * 120.00156 * 4.44601 * 17 15 14 19 19 Si 1.86803 * 120.00029 * 184.44634 * 17 15 14 20 20 H 1.48500 * 109.47283 * 89.99796 * 19 17 15 21 21 H 1.48494 * 109.47286 * 210.00268 * 19 17 15 22 22 H 1.48498 * 109.46979 * 330.00254 * 19 17 15 23 23 C 1.38134 * 119.91011 * 35.47795 * 9 8 6 24 24 H 1.08999 * 109.47050 * 60.00072 * 1 2 3 25 25 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47545 * 299.99696 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99856 * 2 1 3 28 28 H 1.09004 * 109.47484 * 120.00091 * 2 1 3 29 29 H 1.09005 * 109.46369 * 59.99958 * 3 2 1 30 30 H 1.08995 * 109.47026 * 300.00741 * 3 2 1 31 31 H 1.09001 * 109.47289 * 59.99856 * 4 3 2 32 32 H 1.09004 * 109.47484 * 300.00091 * 4 3 2 33 33 H 0.97002 * 119.99761 * 0.02562 * 5 4 3 34 34 H 0.97002 * 119.99833 * 355.69294 * 8 6 5 35 35 H 1.07998 * 119.75945 * 0.02562 * 10 9 8 36 36 H 1.08007 * 119.86036 * 179.97438 * 11 10 9 37 37 H 0.97002 * 120.00425 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.14815 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 5.3834 3.0700 0.0024 7 8 6.1735 2.1458 0.0025 8 7 5.8326 4.3407 0.0025 9 6 7.2060 4.5977 0.0949 10 6 7.6586 5.7127 0.7978 11 6 9.0130 5.9780 0.8960 12 6 9.9317 5.1394 0.2983 13 9 11.2532 5.4024 0.3963 14 6 9.4871 4.0072 -0.4149 15 6 10.4199 3.1429 -1.0307 16 1 11.3252 3.5442 -1.4615 17 6 10.1679 1.7677 -1.0874 18 7 9.0305 1.2923 -0.6488 19 14 11.4554 0.6104 -1.7894 20 1 12.3531 0.1492 -0.7000 21 1 10.7838 -0.5613 -2.4068 22 1 12.2529 1.3234 -2.8193 23 6 8.1083 3.7483 -0.5154 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9562 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 3.4280 3.5610 0.0016 34 1 5.2046 5.0771 -0.0614 35 1 6.9470 6.3744 1.2692 36 1 9.3529 6.8452 1.4429 37 1 8.8557 0.3390 -0.6884 38 1 7.7569 2.8864 -1.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190624870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:56 Heat of formation + Delta-G solvation = -88.237905 kcal Electronic energy + Delta-G solvation = -21378.216816 eV Core-core repulsion = 17940.574497 eV Total energy + Delta-G solvation = -3437.642319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.14012 -41.27637 -39.04734 -37.10406 -35.95617 -34.91730 -34.45661 -31.59969 -30.38245 -28.85092 -27.24209 -24.61175 -23.41173 -22.61526 -22.21680 -21.37615 -19.66554 -19.02162 -17.91100 -17.71454 -17.02697 -16.77501 -16.22291 -16.02977 -15.93290 -15.72130 -15.17145 -14.71787 -14.43194 -14.39999 -14.22031 -13.69186 -13.51294 -13.29337 -13.22197 -12.88253 -12.74706 -12.49054 -12.34611 -12.11263 -12.02984 -11.94099 -11.51077 -11.48106 -11.12409 -10.87443 -10.61870 -9.98770 -9.32263 -8.67086 -8.33404 -6.40487 0.74912 0.97975 1.34888 1.45176 1.49618 1.79634 2.22112 2.31536 2.81077 3.39771 3.54605 3.92316 4.05401 4.08588 4.21501 4.39033 4.48190 4.67314 4.68530 4.70268 4.94787 4.98282 5.03258 5.08396 5.11107 5.19901 5.27950 5.31287 5.38675 5.47982 5.59818 5.67373 5.78425 5.86337 6.16549 6.24139 6.34587 6.62522 6.89688 6.95814 7.24748 7.80126 8.41927 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.004588 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.213939 B = 6101.113976 C = 7660.252118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.115 4.115 4 C 0.140 3.860 5 N -0.729 5.729 6 C 0.676 3.324 7 O -0.585 6.585 8 N -0.670 5.670 9 C 0.152 3.848 10 C -0.214 4.214 11 C -0.111 4.111 12 C -0.064 4.064 13 F -0.171 7.171 14 C 0.056 3.944 15 C -0.501 4.501 16 H 0.068 0.932 17 C 0.024 3.976 18 N -0.799 5.799 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.258 1.258 23 C -0.156 4.156 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.411 0.589 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.280 0.720 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 1.176 0.944 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.153 4.153 4 C 0.015 3.985 5 N -0.388 5.388 6 C 0.376 3.624 7 O -0.461 6.461 8 N -0.320 5.320 9 C 0.058 3.942 10 C -0.236 4.236 11 C -0.131 4.131 12 C -0.085 4.085 13 F -0.150 7.150 14 C 0.053 3.947 15 C -0.531 4.531 16 H 0.086 0.914 17 C -0.191 4.191 18 N -0.423 5.423 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.178 4.178 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.248 0.752 34 H 0.255 0.745 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.970 0.071 0.984 16.999 hybrid contribution 0.599 0.017 -0.238 0.645 sum -16.371 0.088 0.746 16.388 Atomic orbital electron populations 1.21733 0.94348 1.02145 1.02327 1.21452 0.96944 0.95637 1.02246 1.21736 0.91160 0.98547 1.03855 1.21216 0.95344 0.81237 1.00685 1.44916 1.03807 1.09797 1.80265 1.16465 0.83680 0.83550 0.78699 1.91167 1.55075 1.43979 1.55913 1.42240 1.05777 1.06821 1.77114 1.17579 0.82275 0.96541 0.97852 1.20380 0.94648 1.01005 1.07521 1.20654 0.92637 0.99170 1.00614 1.18381 0.76954 1.03078 1.10086 1.91228 1.33952 1.94184 1.95627 1.17932 0.93831 0.91047 0.91914 1.19543 1.05308 0.92732 1.35494 0.91402 1.26782 0.98171 1.00251 0.93894 1.70019 1.22429 1.15434 1.34442 0.85185 0.78069 0.77261 0.79035 1.19049 1.19077 1.18200 1.21587 0.91180 1.01673 1.03316 0.92195 0.92347 0.92143 0.92173 0.92085 0.89986 0.90074 0.93705 0.93577 0.75213 0.74532 0.83473 0.84312 0.90897 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.83 5.93 30.59 0.18 -1.65 16 3 C -0.12 -1.74 5.33 30.59 0.16 -1.57 16 4 C 0.14 3.43 5.67 86.38 0.49 3.92 16 5 N -0.73 -18.86 5.56 -478.54 -2.66 -21.52 16 6 C 0.68 25.82 8.40 179.05 1.50 27.32 16 7 O -0.59 -29.71 13.71 -4.00 -0.05 -29.77 16 8 N -0.67 -23.48 5.34 -317.28 -1.70 -25.17 16 9 C 0.15 6.85 6.29 38.08 0.24 7.09 16 10 C -0.21 -8.54 9.97 22.57 0.22 -8.32 16 11 C -0.11 -4.87 10.00 22.25 0.22 -4.65 16 12 C -0.06 -3.43 7.31 22.89 0.17 -3.27 16 13 F -0.17 -9.08 16.82 44.97 0.76 -8.33 16 14 C 0.06 3.29 5.55 -21.26 -0.12 3.17 16 15 C -0.50 -29.75 8.69 23.43 0.20 -29.54 16 16 H 0.07 3.98 7.84 -2.92 -0.02 3.96 16 17 C 0.02 1.36 5.42 85.25 0.46 1.82 16 18 N -0.80 -46.48 10.54 21.82 0.23 -46.25 16 19 Si 0.98 42.67 29.56 68.60 2.03 44.70 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 C -0.16 -8.62 7.30 22.83 0.17 -8.45 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.41 6.99 8.49 -92.71 -0.79 6.20 16 34 H 0.42 10.12 8.84 -92.71 -0.82 9.30 16 35 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.14 5.03 8.06 -2.91 -0.02 5.00 16 37 H 0.28 15.30 8.30 -92.71 -0.77 14.53 16 38 H 0.13 8.15 4.35 -2.91 -0.01 8.14 16 Total: -1.00 -75.17 325.83 2.71 -72.46 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.51 Total: 28.99 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.62 Total: -15.10 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -4.13 Total: -92.95 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.76 Total: -8.33 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.17 2.71 -72.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190624870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.782 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds