Wall clock time and date at job start Tue Mar 31 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 N 1.46505 * 109.47030 * 119.99815 * 2 1 3 5 5 C 1.34776 * 119.99852 * 275.00059 * 4 2 1 6 6 O 1.21579 * 120.00125 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99336 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99625 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47001 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.46995 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00306 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00287 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99802 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47326 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47024 * 120.00241 * 14 12 10 17 17 H 1.48507 * 109.46901 * 239.99788 * 14 12 10 18 18 C 1.50696 * 109.46992 * 239.99974 * 2 1 3 19 19 C 1.38248 * 119.97128 * 99.99751 * 18 2 1 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 2 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38196 * 119.97501 * 359.51590 * 23 21 20 25 25 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47251 * 299.99826 * 1 2 3 27 27 H 1.08992 * 109.47602 * 59.99977 * 1 2 3 28 28 H 0.97002 * 119.99168 * 95.00147 * 4 2 1 29 29 H 0.96998 * 120.00455 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.46709 * 300.00020 * 8 7 5 31 31 H 1.08998 * 109.46915 * 60.00095 * 8 7 5 32 32 H 1.08997 * 109.47263 * 300.00256 * 9 8 7 33 33 H 1.09005 * 109.46745 * 60.00099 * 9 8 7 34 34 H 0.96997 * 120.00126 * 179.97438 * 13 12 10 35 35 H 1.08002 * 119.98915 * 359.97438 * 19 18 2 36 36 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 37 37 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 38 38 H 1.07993 * 119.98776 * 180.24915 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8575 1.1613 2.4118 7 7 2.5968 -0.6535 3.4575 8 6 2.7372 0.0775 4.7193 9 6 3.2615 -0.8688 5.8013 10 6 3.4065 -0.1167 7.0990 11 1 3.1500 0.9313 7.1475 12 6 3.8667 -0.7665 8.2246 13 7 4.1796 -2.0425 8.1656 14 14 4.0458 0.1656 9.8336 15 1 3.6318 1.5780 9.6362 16 1 3.1857 -0.4629 10.8682 17 1 5.4630 0.1228 10.2753 18 6 2.0323 -0.7104 -1.2304 19 6 2.4586 0.0201 -2.3240 20 6 2.9199 -0.6302 -3.4528 21 6 2.9546 -2.0139 -3.4883 22 9 3.4049 -2.6508 -4.5915 23 6 2.5221 -2.7445 -2.3945 24 6 2.0658 -2.0920 -1.2650 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.2490 -1.6318 1.1526 29 1 2.8282 -1.5945 3.4138 30 1 3.4384 0.9014 4.5858 31 1 1.7667 0.4715 5.0209 32 1 2.5601 -1.6924 5.9346 33 1 4.2320 -1.2631 5.4998 34 1 4.5036 -2.4996 8.9574 35 1 2.4310 1.0994 -2.2963 36 1 3.2532 -0.0595 -4.3069 37 1 2.5450 -3.8240 -2.4227 38 1 1.7322 -2.6616 -0.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193162028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:47 Heat of formation + Delta-G solvation = -86.163469 kcal Electronic energy + Delta-G solvation = -20597.201484 eV Core-core repulsion = 17159.649120 eV Total energy + Delta-G solvation = -3437.552365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90207 -41.30208 -40.05046 -36.97450 -36.12006 -34.81606 -32.77485 -32.10566 -31.00183 -29.75318 -26.72102 -24.80440 -24.17787 -23.00495 -22.20229 -21.46241 -19.66343 -18.64126 -18.41935 -17.70961 -17.03684 -16.63129 -16.57331 -16.46451 -16.28637 -15.54334 -15.31326 -15.10408 -14.70292 -14.50454 -14.42894 -14.27153 -14.03548 -13.52491 -13.19747 -13.12842 -12.94042 -12.68513 -12.49927 -12.22512 -12.12403 -11.88096 -11.65364 -11.47241 -11.17606 -10.59724 -10.36036 -10.08503 -9.76682 -9.58107 -8.22959 -6.32815 0.06809 0.25503 1.42050 1.43138 1.56098 1.77143 2.19404 2.42324 2.58640 3.12097 3.26420 3.39577 3.53595 3.75131 3.95598 4.21735 4.26816 4.36739 4.47182 4.50726 4.55332 4.73219 4.89103 4.90707 4.95520 4.98498 5.14591 5.21455 5.28033 5.32810 5.38853 5.53956 5.61902 5.63705 5.80920 5.87718 6.05921 6.19087 6.80858 7.13975 7.36598 7.62307 8.89163 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033074 B = 0.002661 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.391402 B =10520.041547 C =11007.767637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.204 3.796 3 H 0.082 0.918 4 N -0.729 5.729 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.734 5.734 8 C 0.161 3.839 9 C 0.024 3.976 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.102 4.102 19 C -0.080 4.080 20 C -0.151 4.151 21 C 0.078 3.922 22 F -0.149 7.149 23 C -0.151 4.151 24 C -0.084 4.084 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.408 0.592 29 H 0.406 0.594 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.265 0.735 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 -1.686 -24.066 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.099 3.901 3 H 0.100 0.900 4 N -0.387 5.387 5 C 0.400 3.600 6 O -0.517 6.517 7 N -0.389 5.389 8 C 0.037 3.963 9 C -0.014 4.014 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.789 3.211 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.103 4.103 19 C -0.099 4.099 20 C -0.170 4.170 21 C 0.059 3.941 22 F -0.128 7.128 23 C -0.169 4.169 24 C -0.103 4.103 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.245 0.755 29 H 0.242 0.758 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.108 -0.776 -23.946 24.497 hybrid contribution 0.534 -0.721 0.744 1.166 sum -4.574 -1.497 -23.202 23.696 Atomic orbital electron populations 1.22150 0.93571 1.03045 1.02464 1.19590 0.94500 0.95867 0.80153 0.89960 1.45144 1.71592 1.14119 1.07820 1.16115 0.78119 0.84721 0.81029 1.90859 1.59153 1.16330 1.85404 1.45228 1.70106 1.14447 1.09082 1.21060 0.99188 0.94588 0.81490 1.19129 0.95521 0.94488 0.92255 1.21499 1.44319 0.96972 0.95504 0.92306 1.25860 0.94746 0.95807 1.02782 1.70060 1.45271 1.10596 1.30728 0.85406 0.77915 0.78952 0.78826 1.18963 1.20233 1.20283 1.19964 1.00691 0.94300 0.95361 1.21088 0.95982 1.01348 0.91453 1.21338 1.02566 0.92408 1.00686 1.18035 1.00493 0.91385 0.84152 1.91486 1.87031 1.82456 1.51835 1.21340 1.01262 1.01802 0.92544 1.20994 0.97692 0.93497 0.98071 0.91151 0.93780 0.89843 0.75483 0.75833 0.93887 0.93784 0.97247 0.97350 0.92574 0.83163 0.82989 0.83024 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.46 71.98 0.68 -2.14 16 2 C 0.20 4.05 2.78 44.24 0.12 4.18 16 3 H 0.08 1.94 7.44 -2.39 -0.02 1.93 16 4 N -0.73 -16.68 5.03 -461.41 -2.32 -19.00 16 5 C 0.70 23.36 8.53 179.05 1.53 24.89 16 6 O -0.64 -26.51 16.01 -3.97 -0.06 -26.58 16 7 N -0.73 -25.21 5.56 -478.53 -2.66 -27.87 16 8 C 0.16 6.93 5.61 86.38 0.48 7.42 16 9 C 0.02 1.18 5.09 29.85 0.15 1.33 16 10 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 12 C 0.01 0.37 5.46 84.65 0.46 0.84 16 13 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 14 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 C -0.10 -1.60 4.95 -19.86 -0.10 -1.70 16 19 C -0.08 -1.14 9.67 22.26 0.22 -0.92 16 20 C -0.15 -2.14 10.03 22.31 0.22 -1.92 16 21 C 0.08 1.28 7.30 22.38 0.16 1.44 16 22 F -0.15 -2.76 17.27 44.97 0.78 -1.98 16 23 C -0.15 -2.11 10.03 22.31 0.22 -1.89 16 24 C -0.08 -1.14 9.05 22.26 0.20 -0.94 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.41 6.93 6.88 -92.71 -0.64 6.29 16 29 H 0.41 11.72 8.49 -92.71 -0.79 10.94 16 30 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.15 1.64 8.04 -2.91 -0.02 1.61 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.15 1.46 6.92 -2.91 -0.02 1.44 16 Total: -1.00 -68.95 331.99 2.29 -66.66 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.34 Total: 16.53 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.59 Total: 0.49 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -4.70 Total: -100.66 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.95 2.29 -66.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193162028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.502 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds