Wall clock time and date at job start Tue Mar 31 2020 01:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47194 * 2 1 4 4 C 1.53007 * 109.47419 * 184.61877 * 3 2 1 5 5 N 1.46494 * 109.47313 * 175.34682 * 4 3 2 6 6 C 1.36897 * 120.00017 * 95.23842 * 5 4 3 7 7 H 1.07992 * 120.00207 * 216.25216 * 6 5 4 8 8 C 1.39040 * 119.99618 * 35.96951 * 6 5 4 9 9 N 1.31371 * 120.00061 * 215.15178 * 8 6 5 10 10 Si 1.86800 * 119.99494 * 35.15830 * 8 6 5 11 11 H 1.48499 * 109.47353 * 89.09598 * 10 8 6 12 12 H 1.48505 * 109.46693 * 209.09023 * 10 8 6 13 13 H 1.48491 * 109.47469 * 329.09126 * 10 8 6 14 14 C 1.34777 * 120.00507 * 275.24151 * 5 4 3 15 15 O 1.21606 * 119.99926 * 359.97438 * 14 5 4 16 16 C 1.47570 * 120.00052 * 180.02562 * 14 5 4 17 17 C 1.40065 * 120.58709 * 89.71843 * 16 14 5 18 18 C 1.50706 * 120.84381 * 0.02562 * 17 16 14 19 19 C 1.38328 * 118.31280 * 179.80085 * 17 16 14 20 20 C 1.38362 * 119.38480 * 0.45313 * 19 17 16 21 21 N 1.31928 * 121.14414 * 359.78376 * 20 19 17 22 22 C 1.31925 * 121.84822 * 359.97438 * 21 20 19 23 23 F 1.35101 * 119.76254 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47344 * 300.00156 * 1 2 3 26 26 H 1.09001 * 109.47075 * 59.99893 * 1 2 3 27 27 H 1.09001 * 109.47335 * 240.00393 * 2 1 3 28 28 H 1.09001 * 109.47075 * 120.00107 * 2 1 3 29 29 H 1.09006 * 109.47478 * 64.62380 * 3 2 1 30 30 H 1.09000 * 109.47654 * 304.62114 * 3 2 1 31 31 H 1.09003 * 109.46448 * 55.34952 * 4 3 2 32 32 H 1.08990 * 109.46990 * 295.35480 * 4 3 2 33 33 H 0.97003 * 119.99278 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46551 * 90.00044 * 18 17 16 35 35 H 1.08993 * 109.47326 * 210.00173 * 18 17 16 36 36 H 1.09002 * 109.46924 * 330.00734 * 18 17 16 37 37 H 1.08003 * 120.30729 * 180.19762 * 19 17 16 38 38 H 1.07998 * 119.42604 * 179.76498 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5656 1.4440 -0.1162 5 7 4.0454 2.8236 -0.2280 6 6 4.4609 3.4965 0.8895 7 1 4.2631 4.5535 0.9881 8 6 5.1326 2.8177 1.9000 9 7 4.9450 3.1557 3.1556 10 14 6.3020 1.4252 1.4723 11 1 7.6640 1.9733 1.2494 12 1 6.3384 0.4484 2.5903 13 1 5.8332 0.7467 0.2374 14 6 4.0777 3.4306 -1.4309 15 8 3.7089 2.8328 -2.4236 16 6 4.5615 4.8202 -1.5435 17 6 5.9185 5.0865 -1.7662 18 6 6.9151 3.9635 -1.8966 19 6 6.3199 6.4063 -1.8682 20 6 5.3802 7.4137 -1.7389 21 7 4.1083 7.1368 -1.5245 22 6 3.6734 5.8954 -1.4240 23 9 2.3614 5.6601 -1.2035 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7458 1.9319 0.9285 30 1 1.6106 1.9797 -0.8457 31 1 3.8630 0.8830 -1.0021 32 1 3.9979 0.9796 0.7700 33 1 5.4139 2.6822 3.8605 34 1 6.9938 3.6673 -2.9427 35 1 7.8888 4.2986 -1.5396 36 1 6.5832 3.1124 -1.3019 37 1 7.3578 6.6484 -2.0429 38 1 5.6935 8.4444 -1.8146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199713522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:12 Heat of formation + Delta-G solvation = -63.943815 kcal Electronic energy + Delta-G solvation = -22777.071743 eV Core-core repulsion = 19340.482895 eV Total energy + Delta-G solvation = -3436.588848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.13698 -41.54834 -40.16119 -37.32428 -35.72136 -34.97749 -33.97283 -32.17771 -30.10065 -29.05371 -27.01072 -25.78535 -24.30507 -23.26832 -22.14193 -21.26391 -19.49345 -18.59981 -18.53099 -18.10603 -17.31941 -16.91131 -16.48833 -16.24887 -15.73869 -15.68459 -14.94928 -14.83770 -14.69196 -14.64518 -14.27594 -13.94856 -13.89808 -13.63639 -13.58876 -13.45507 -13.13419 -12.98053 -12.68136 -12.31677 -12.18383 -11.96140 -11.73612 -11.46786 -11.30294 -10.94876 -10.59080 -10.46171 -9.98882 -9.81626 -8.67479 -6.13695 -0.17787 0.06853 1.19173 1.31247 1.41172 1.61914 2.15905 2.32592 2.55550 2.61564 2.83688 3.46242 3.74544 3.81846 3.95505 4.01910 4.08540 4.21953 4.33608 4.40788 4.49206 4.55161 4.67007 4.71998 4.73931 4.77721 4.86123 4.90742 5.01743 5.08992 5.17673 5.24850 5.31439 5.33969 5.43410 5.61027 5.92596 6.14480 6.59516 6.84311 7.26026 7.63739 8.47181 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.008145 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.057940 B = 3436.986047 C = 4357.392044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.121 4.121 4 C 0.110 3.890 5 N -0.442 5.442 6 C -0.363 4.363 7 H 0.059 0.941 8 C 0.053 3.947 9 N -0.864 5.864 10 Si 0.902 3.098 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.248 1.248 14 C 0.513 3.487 15 O -0.613 6.613 16 C -0.172 4.172 17 C 0.004 3.996 18 C -0.118 4.118 19 C -0.166 4.166 20 C 0.137 3.863 21 N -0.537 5.537 22 C 0.297 3.703 23 F -0.130 7.130 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.285 0.715 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.197 0.803 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 0.333 -6.266 8.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.160 4.160 4 C -0.013 4.013 5 N -0.160 5.160 6 C -0.490 4.490 7 H 0.077 0.923 8 C -0.156 4.156 9 N -0.497 5.497 10 Si 0.724 3.276 11 H -0.185 1.185 12 H -0.197 1.197 13 H -0.172 1.172 14 C 0.302 3.698 15 O -0.500 6.500 16 C -0.179 4.179 17 C -0.004 4.004 18 C -0.174 4.174 19 C -0.185 4.185 20 C -0.019 4.019 21 N -0.253 5.253 22 C 0.145 3.855 23 F -0.109 7.109 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.214 0.786 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.155 0.637 -6.377 7.638 hybrid contribution 0.294 -0.998 0.443 1.131 sum 4.449 -0.361 -5.934 7.425 Atomic orbital electron populations 1.21722 0.94450 1.02515 1.01581 1.21455 0.97131 0.94373 1.02492 1.21807 0.94745 0.98630 1.00777 1.21833 0.95110 0.83399 1.00921 1.43701 1.54020 1.12798 1.05456 1.18468 1.40330 0.94900 0.95270 0.92277 1.25784 0.96806 0.99436 0.93525 1.70016 1.36844 1.42564 1.00326 0.86574 0.81151 0.79991 0.79918 1.18536 1.19688 1.17164 1.18164 0.81900 0.86771 0.82949 1.90622 1.54750 1.67186 1.37482 1.20578 0.96118 0.93730 1.07450 1.20592 0.90777 0.97838 0.91183 1.20944 0.97958 0.94988 1.03519 1.22474 1.03939 0.90357 1.01741 1.23453 0.84760 1.02525 0.91143 1.67005 1.21569 1.19240 1.17468 1.18302 0.78744 0.89902 0.98582 1.91540 1.33119 1.94497 1.91754 0.90600 0.92970 0.93262 0.91404 0.91151 0.93082 0.93873 0.91441 0.91129 0.90535 0.88554 0.87015 0.93640 0.78574 0.76671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.12 -3.64 5.93 30.59 0.18 -3.46 16 3 C -0.12 -4.95 5.50 30.59 0.17 -4.78 16 4 C 0.11 4.90 3.59 86.38 0.31 5.21 16 5 N -0.44 -21.94 2.18 -639.11 -1.39 -23.34 16 6 C -0.36 -19.28 8.96 84.09 0.75 -18.53 16 7 H 0.06 3.54 7.37 -2.91 -0.02 3.51 16 8 C 0.05 2.73 4.97 84.95 0.42 3.15 16 9 N -0.86 -46.42 13.95 21.68 0.30 -46.11 16 10 Si 0.90 38.06 26.26 68.60 1.80 39.87 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.25 -10.21 5.80 99.48 0.58 -9.63 16 14 C 0.51 25.43 5.32 86.71 0.46 25.90 16 15 O -0.61 -32.52 16.77 -4.05 -0.07 -32.59 16 16 C -0.17 -7.63 4.11 -19.95 -0.08 -7.72 16 17 C 0.00 0.15 5.95 -19.40 -0.12 0.03 16 18 C -0.12 -3.53 9.69 71.24 0.69 -2.84 16 19 C -0.17 -4.14 9.80 22.32 0.22 -3.92 16 20 C 0.14 3.65 11.17 84.71 0.95 4.59 16 21 N -0.54 -20.26 10.36 -195.66 -2.03 -22.28 16 22 C 0.30 13.30 8.26 85.10 0.70 14.00 16 23 F -0.13 -6.33 16.86 44.97 0.76 -5.57 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 32 H 0.07 3.08 4.54 -2.39 -0.01 3.07 16 33 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.11 2.48 8.10 -2.39 -0.02 2.46 16 36 H 0.04 1.68 6.99 -2.39 -0.02 1.66 16 37 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.22 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -69.23 323.71 5.68 -63.55 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.93 Total: 17.99 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.37 Total: 8.49 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -3.12 Total: -91.73 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.07 Total: -32.59 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.76 Total: -5.57 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.80 Total: 39.87 kcal Total: -69.23 5.68 -63.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199713522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.396 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds