Wall clock time and date at job start Tue Mar 31 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53001 * 109.47078 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.37172 * 119.99849 * 270.34894 * 5 4 3 7 7 H 1.07994 * 119.99752 * 142.83872 * 6 5 4 8 8 C 1.38879 * 120.00001 * 322.84447 * 6 5 4 9 9 N 1.31476 * 120.00315 * 338.85269 * 8 6 5 10 10 Si 1.86805 * 119.99846 * 158.85637 * 8 6 5 11 11 H 1.48497 * 109.46903 * 90.00014 * 10 8 6 12 12 H 1.48500 * 109.46758 * 209.99606 * 10 8 6 13 13 H 1.48491 * 109.47074 * 329.99654 * 10 8 6 14 14 C 1.34772 * 120.00236 * 90.35335 * 5 4 3 15 15 O 1.21590 * 119.99566 * 359.97438 * 14 5 4 16 16 N 1.34769 * 120.00345 * 180.27118 * 14 5 4 17 17 C 1.40034 * 120.00135 * 175.28391 * 16 14 5 18 18 C 1.38807 * 120.07696 * 28.86500 * 17 16 14 19 19 C 1.38145 * 119.95529 * 179.97438 * 18 17 16 20 20 C 1.38280 * 120.11039 * 0.02562 * 19 18 17 21 21 C 1.38272 * 120.15683 * 359.97438 * 20 19 18 22 22 C 1.38304 * 120.04224 * 359.70078 * 21 20 19 23 23 F 1.35106 * 120.04997 * 180.27923 * 22 21 20 24 24 H 1.09000 * 109.47310 * 300.00144 * 1 2 3 25 25 H 1.09005 * 109.47154 * 59.99672 * 1 2 3 26 26 H 1.09003 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47310 * 239.99856 * 2 1 3 28 28 H 1.09002 * 109.46760 * 120.00022 * 2 1 3 29 29 H 1.09000 * 109.47123 * 59.99742 * 3 2 1 30 30 H 1.08992 * 109.47359 * 299.99894 * 3 2 1 31 31 H 1.09007 * 109.46881 * 60.00461 * 4 3 2 32 32 H 1.08992 * 109.47254 * 300.00343 * 4 3 2 33 33 H 0.96998 * 119.99817 * 180.02562 * 9 8 6 34 34 H 0.97008 * 119.99884 * 355.29610 * 16 14 5 35 35 H 1.07998 * 120.02755 * 359.94852 * 18 17 16 36 36 H 1.08005 * 119.94522 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.92365 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.97718 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2806 3.4731 -1.1864 7 1 4.0526 4.5247 -1.2777 8 6 4.7988 2.7781 -2.2714 9 7 5.4550 1.6550 -2.0802 10 14 4.5634 3.4391 -4.0027 11 1 5.6977 4.3324 -4.3499 12 1 4.5133 2.3068 -4.9622 13 1 3.2922 4.2034 -4.0721 14 6 4.2893 3.4563 1.1687 15 8 4.0919 2.8808 2.2214 16 7 4.7333 4.7288 1.1693 17 6 4.8791 5.4189 2.3790 18 6 5.1605 4.7237 3.5470 19 6 5.3043 5.4071 4.7389 20 6 5.1678 6.7828 4.7706 21 6 4.8875 7.4799 3.6099 22 6 4.7489 6.8029 2.4119 23 9 4.4806 7.4845 1.2766 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 5.8172 1.1698 -2.8380 34 1 4.9518 5.1666 0.3317 35 1 5.2665 3.6492 3.5241 36 1 5.5228 4.8659 5.6477 37 1 5.2805 7.3140 5.7042 38 1 4.7811 8.5544 3.6380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201997843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:32 Heat of formation + Delta-G solvation = -51.509517 kcal Electronic energy + Delta-G solvation = -22019.778333 eV Core-core repulsion = 18583.728676 eV Total energy + Delta-G solvation = -3436.049656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.49188 -39.76586 -38.08734 -35.69969 -34.08619 -33.74747 -31.63512 -30.18966 -29.29441 -27.85869 -25.02462 -23.42935 -22.50928 -21.68112 -20.44762 -19.59801 -18.04805 -17.62287 -16.77406 -15.88090 -15.61978 -15.28400 -14.83182 -14.68802 -14.61918 -14.14770 -13.91033 -13.44903 -13.23632 -13.18626 -12.62527 -12.25466 -12.11796 -11.94674 -11.61398 -11.51718 -11.27899 -11.10348 -11.07197 -10.65110 -10.50475 -10.39325 -10.29346 -9.87967 -9.72500 -9.30664 -8.77294 -8.44223 -7.73821 -7.35923 -6.44548 -4.18412 1.50260 1.63080 3.06820 3.16898 3.20933 3.63885 3.88801 4.08841 4.29844 4.59967 4.92460 5.05494 5.22003 5.28860 5.48121 5.50784 5.61470 5.65767 5.74945 6.03937 6.09151 6.23950 6.29759 6.36289 6.40053 6.44068 6.53474 6.69280 6.71012 6.81484 6.82366 7.00859 7.07525 7.27233 7.40594 7.55909 7.82711 8.02071 8.34227 9.00074 9.53871 9.91207 10.56061 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.005947 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.342043 B = 4707.000507 C = 5953.772342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.131 3.869 5 N -0.451 5.451 6 C -0.352 4.352 7 H 0.084 0.916 8 C 0.050 3.950 9 N -0.854 5.854 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.669 3.331 15 O -0.625 6.625 16 N -0.677 5.677 17 C 0.166 3.834 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.135 4.135 22 C 0.044 3.956 23 F -0.143 7.143 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.270 0.730 34 H 0.414 0.586 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 4.395 5.975 7.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.007 3.993 5 N -0.171 5.171 6 C -0.480 4.480 7 H 0.102 0.898 8 C -0.158 4.158 9 N -0.490 5.490 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.193 1.193 14 C 0.373 3.627 15 O -0.510 6.510 16 N -0.322 5.322 17 C 0.066 3.934 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.154 4.154 22 C 0.021 3.979 23 F -0.122 7.122 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.179 0.821 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.304 3.738 6.378 7.743 hybrid contribution -0.052 0.728 -1.663 1.816 sum -2.356 4.466 4.715 6.908 Atomic orbital electron populations 1.21757 0.96642 1.00669 1.01489 1.21424 0.94992 0.97692 1.01607 1.21928 0.97934 0.95474 1.01406 1.21347 0.91073 0.83356 1.03555 1.42649 1.59110 1.12746 1.02627 1.19232 1.44170 0.96035 0.88514 0.89841 1.25316 0.93731 0.96414 1.00301 1.69953 1.30333 1.16725 1.31985 0.86175 0.79163 0.78734 0.82101 1.20168 1.20578 1.19285 1.16108 0.80327 0.80977 0.85293 1.90674 1.62939 1.66606 1.30733 1.42666 1.68126 1.14248 1.07202 1.17777 0.98469 0.88922 0.88220 1.21656 0.98495 1.02774 0.90387 1.21113 0.99957 0.93996 0.97867 1.20814 1.02948 0.94335 0.97330 1.20820 1.03326 1.00150 0.91115 1.17479 1.08637 0.88733 0.83064 1.91450 1.91954 1.79643 1.49131 0.93096 0.93049 0.93412 0.92227 0.92379 0.93016 0.92231 0.87696 0.92646 0.91935 0.74781 0.82099 0.85713 0.85808 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.13 -2.60 5.54 -26.73 -0.15 -2.75 16 4 C 0.13 3.05 5.01 -4.04 -0.02 3.03 16 5 N -0.45 -11.21 2.52 -120.18 -0.30 -11.52 16 6 C -0.35 -8.77 8.51 -14.92 -0.13 -8.89 16 7 H 0.08 2.01 7.00 -52.49 -0.37 1.64 16 8 C 0.05 1.22 4.97 -17.47 -0.09 1.13 16 9 N -0.85 -21.98 11.42 55.49 0.63 -21.35 16 10 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.67 16.43 8.11 -86.93 -0.70 15.73 16 15 O -0.62 -16.00 12.99 5.29 0.07 -15.93 16 16 N -0.68 -14.79 5.17 -14.17 -0.07 -14.86 16 17 C 0.17 3.25 6.41 -83.60 -0.54 2.72 16 18 C -0.11 -2.07 8.76 -39.41 -0.35 -2.42 16 19 C -0.11 -1.61 10.04 -39.60 -0.40 -2.00 16 20 C -0.13 -1.75 10.04 -39.55 -0.40 -2.15 16 21 C -0.13 -1.91 10.02 -39.54 -0.40 -2.31 16 22 C 0.04 0.76 7.31 -39.26 -0.29 0.47 16 23 F -0.14 -2.54 16.87 2.25 0.04 -2.50 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.11 2.59 5.48 -51.93 -0.28 2.30 16 32 H 0.06 1.33 7.41 -51.93 -0.38 0.95 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.41 8.81 6.64 -40.82 -0.27 8.54 16 35 H 0.16 3.33 5.75 -52.49 -0.30 3.03 16 36 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -27.65 322.21 -8.02 -35.67 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -4.97 Total: 12.85 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.24 Total: -1.29 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.26 Total: -47.73 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.07 Total: -15.93 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.65 -8.02 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201997843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.836 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds