Wall clock time and date at job start Tue Mar 31 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47006 * 2 1 4 4 N 1.46498 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99743 * 270.00206 * 4 3 2 6 6 C 1.50698 * 109.46950 * 269.99908 * 5 4 3 7 7 H 1.07995 * 120.00467 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99444 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00304 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46965 * 89.99915 * 10 8 6 12 12 H 1.48501 * 109.47131 * 209.99884 * 10 8 6 13 13 H 1.48497 * 109.47054 * 330.00498 * 10 8 6 14 14 C 1.34770 * 120.00412 * 89.99743 * 4 3 2 15 15 O 1.21586 * 120.00303 * 180.02562 * 14 4 3 16 16 N 1.34777 * 119.99819 * 0.02562 * 14 4 3 17 17 C 1.40060 * 120.00055 * 184.59088 * 16 14 4 18 18 C 1.38846 * 120.04615 * 145.20671 * 17 16 14 19 19 C 1.38115 * 119.95603 * 180.25285 * 18 17 16 20 20 C 1.38463 * 120.04760 * 359.47769 * 19 18 17 21 21 F 1.35099 * 119.96259 * 180.27250 * 20 19 18 22 22 C 1.38478 * 120.08783 * 0.24933 * 20 19 18 23 23 C 1.38122 * 120.04197 * 0.02562 * 22 20 19 24 24 H 1.09008 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47212 * 299.99800 * 1 2 3 26 26 H 1.08999 * 109.47554 * 60.00009 * 1 2 3 27 27 H 1.09004 * 109.46561 * 240.00440 * 2 1 3 28 28 H 1.08996 * 109.47059 * 119.99996 * 2 1 3 29 29 H 1.08998 * 109.46972 * 60.00053 * 3 2 1 30 30 H 1.09004 * 109.47380 * 300.00498 * 3 2 1 31 31 H 1.09001 * 109.47538 * 29.99682 * 5 4 3 32 32 H 1.08998 * 109.47403 * 149.99516 * 5 4 3 33 33 H 0.97002 * 119.99497 * 179.97438 * 9 8 6 34 34 H 0.96996 * 119.99925 * 4.59492 * 16 14 4 35 35 H 1.08004 * 120.02232 * 0.02562 * 18 17 16 36 36 H 1.08008 * 119.97659 * 179.74684 * 19 18 17 37 37 H 1.07993 * 119.97830 * 180.02562 * 22 20 19 38 38 H 1.07999 * 120.02190 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.4424 1.2679 6 6 4.4892 2.8631 1.7030 7 1 4.1384 3.6841 1.0953 8 6 5.1679 3.1150 2.8765 9 7 5.5964 2.1152 3.6158 10 14 5.4800 4.8760 3.4156 11 1 4.3506 5.3429 4.2593 12 1 6.7409 4.9382 4.1976 13 1 5.5963 5.7469 2.2184 14 6 4.1784 1.4427 -1.1680 15 8 5.3942 1.4423 -1.1685 16 7 3.5040 1.4433 -2.3349 17 6 4.2005 1.3464 -3.5463 18 6 3.6448 0.6546 -4.6142 19 6 4.3355 0.5558 -5.8062 20 6 5.5765 1.1551 -5.9401 21 9 6.2481 1.0620 -7.1086 22 6 6.1300 1.8503 -4.8781 23 6 5.4450 1.9467 -3.6826 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 3.6492 0.9284 2.0277 32 1 5.1903 0.9286 1.1371 33 1 6.0742 2.2923 4.4412 34 1 2.5364 1.5110 -2.3359 35 1 2.6747 0.1910 -4.5117 36 1 3.9053 0.0143 -6.6358 37 1 7.0978 2.3174 -4.9847 38 1 5.8768 2.4893 -2.8546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202351252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:59 Heat of formation + Delta-G solvation = -67.340574 kcal Electronic energy + Delta-G solvation = -21607.210843 eV Core-core repulsion = 18170.474700 eV Total energy + Delta-G solvation = -3436.736143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.81810 -41.73454 -39.63131 -37.30570 -35.82151 -34.88534 -33.55848 -32.09064 -30.46201 -28.96437 -26.92394 -25.20600 -24.18977 -23.19456 -22.62128 -20.88800 -19.45483 -18.65782 -18.48543 -18.31944 -17.12103 -16.89885 -16.53495 -16.35098 -15.88799 -15.52698 -15.30672 -15.01532 -14.59340 -14.46879 -14.19010 -14.09578 -13.79920 -13.44039 -13.41363 -13.05977 -12.92862 -12.76380 -12.47184 -12.23750 -12.14659 -12.10426 -11.70553 -11.61593 -11.27390 -10.92787 -10.62882 -10.06130 -9.55849 -8.94974 -8.21009 -6.35763 0.12141 0.28159 1.36830 1.39815 1.49542 1.68996 2.11833 2.38905 2.70769 2.97068 3.09067 3.34218 3.81751 3.94067 3.97771 4.13401 4.28539 4.32263 4.42328 4.53566 4.63328 4.74087 4.91943 4.98615 5.00815 5.14996 5.18041 5.22591 5.25661 5.28614 5.32692 5.47738 5.49878 5.57882 5.79625 5.99713 6.06484 6.07962 6.73115 7.04009 7.31277 7.61689 8.85364 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.004784 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.794960 B = 5851.378351 C = 7260.145033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.611 5.611 5 C 0.279 3.721 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.694 3.306 15 O -0.619 6.619 16 N -0.674 5.674 17 C 0.148 3.852 18 C -0.109 4.109 19 C -0.122 4.122 20 C 0.062 3.938 21 F -0.147 7.147 22 C -0.140 4.140 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.027 0.973 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.421 0.579 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 -3.288 -16.348 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C -0.016 4.016 4 N -0.344 5.344 5 C 0.157 3.843 6 C -0.580 4.580 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.396 3.604 15 O -0.499 6.499 16 N -0.325 5.325 17 C 0.053 3.947 18 C -0.129 4.129 19 C -0.141 4.141 20 C 0.042 3.958 21 F -0.125 7.125 22 C -0.159 4.159 23 C -0.140 4.140 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.261 0.739 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.158 0.842 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.753 -3.340 -16.092 19.641 hybrid contribution 0.581 0.874 0.763 1.298 sum -10.172 -2.465 -15.330 18.562 Atomic orbital electron populations 1.21665 0.92628 1.02699 1.02878 1.21928 0.97937 0.95801 1.01917 1.21795 0.78041 0.97999 1.03780 1.47444 1.07424 1.74825 1.04701 1.18649 0.90744 0.95880 0.79003 1.21709 1.36762 0.93093 1.06466 0.92952 1.25807 0.94918 1.01732 0.96451 1.70049 1.38899 1.32926 1.14851 0.85444 0.78056 0.79321 0.78144 1.18774 1.20758 1.19974 1.16114 0.85048 0.78064 0.81191 1.90861 1.13862 1.58812 1.86401 1.42593 1.10658 1.77019 1.02222 1.17872 0.93512 0.97502 0.85857 1.21027 1.02519 0.98297 0.91066 1.21219 0.92771 1.00572 0.99522 1.17802 0.93141 1.02853 0.81973 1.91465 1.80239 1.94919 1.45911 1.21105 1.01566 1.01217 0.92010 1.21158 0.95783 0.99872 0.97155 0.91646 0.92610 0.90596 0.91633 0.93631 0.90407 0.88905 0.95519 0.98337 0.92429 0.73879 0.81054 0.81115 0.84162 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.14 -3.28 6.26 30.59 0.19 -3.09 16 3 C 0.11 3.08 5.21 86.38 0.45 3.53 16 4 N -0.61 -25.36 2.46 -844.21 -2.07 -27.44 16 5 C 0.28 14.87 5.16 85.63 0.44 15.32 16 6 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 10 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.69 29.07 8.12 179.06 1.45 30.52 16 15 O -0.62 -32.30 13.36 -3.99 -0.05 -32.35 16 16 N -0.67 -19.97 5.22 -317.13 -1.66 -21.63 16 17 C 0.15 4.22 6.30 38.12 0.24 4.46 16 18 C -0.11 -2.12 9.96 22.39 0.22 -1.90 16 19 C -0.12 -2.30 10.02 22.29 0.22 -2.08 16 20 C 0.06 1.51 7.30 22.38 0.16 1.67 16 21 F -0.15 -3.57 17.26 44.97 0.78 -2.80 16 22 C -0.14 -3.91 10.02 22.30 0.22 -3.68 16 23 C -0.12 -3.94 8.69 22.39 0.19 -3.74 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.09 2.01 6.30 -2.38 -0.02 1.99 16 31 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 32 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.42 8.96 6.52 -92.71 -0.60 8.35 16 35 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.12 4.76 6.22 -2.91 -0.02 4.75 16 Total: -1.00 -73.84 327.85 4.99 -68.85 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.47 Total: 14.34 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.22 Total: 9.74 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.44 Total: -104.60 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.84 4.99 -68.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202351252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.505 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds