Wall clock time and date at job start Tue Mar 31 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36161 * 125.90554 * 2 1 4 4 C 1.35876 * 105.97258 * 179.97438 * 3 2 1 5 5 N 1.40550 * 126.79118 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99940 * 359.97438 * 5 4 3 7 7 O 1.21605 * 120.00083 * 5.05402 * 6 5 4 8 8 N 1.34777 * 120.00001 * 185.05591 * 6 5 4 9 9 C 1.46961 * 120.59278 * 354.92290 * 8 6 5 10 10 C 1.53374 * 108.63600 * 235.24791 * 9 8 6 11 11 N 1.46965 * 108.63374 * 310.57730 * 10 9 8 12 12 C 1.36932 * 120.59649 * 235.19889 * 11 10 9 13 13 H 1.08006 * 119.99582 * 26.40166 * 12 11 10 14 14 C 1.38803 * 120.00424 * 206.12670 * 12 11 10 15 15 N 1.31621 * 120.00351 * 217.31602 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 37.31822 * 14 12 11 17 17 H 1.48496 * 109.47413 * 95.27702 * 16 14 12 18 18 H 1.48499 * 109.46947 * 215.27754 * 16 14 12 19 19 H 1.48498 * 109.47073 * 335.27652 * 16 14 12 20 20 C 1.46963 * 118.81075 * 55.48059 * 11 10 9 21 21 C 1.46965 * 120.59407 * 174.94518 * 8 6 5 22 22 N 1.34026 * 106.41790 * 0.25871 * 4 3 2 23 23 N 1.28587 * 109.04764 * 359.56519 * 22 4 3 24 24 H 1.08996 * 109.47144 * 89.99679 * 1 2 3 25 25 H 1.08994 * 109.47228 * 210.00051 * 1 2 3 26 26 H 1.09003 * 109.46953 * 330.00028 * 1 2 3 27 27 H 1.08001 * 127.01303 * 359.96012 * 3 2 1 28 28 H 0.97000 * 120.00026 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.61253 * 115.50744 * 9 8 6 30 30 H 1.09001 * 109.61300 * 354.99553 * 9 8 6 31 31 H 1.08995 * 109.61344 * 190.82985 * 10 9 8 32 32 H 1.08999 * 109.60610 * 70.31736 * 10 9 8 33 33 H 0.96999 * 120.00641 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.61545 * 64.26367 * 20 11 10 35 35 H 1.09007 * 109.60907 * 184.77907 * 20 11 10 36 36 H 1.08999 * 109.61088 * 244.49669 * 21 8 6 37 37 H 1.08997 * 109.61090 * 4.83506 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1029 0.0000 4 6 3.5409 0.6397 0.0006 5 7 4.7160 1.4108 0.0013 6 6 4.6389 2.7564 0.0010 7 8 3.5568 3.3035 0.0928 8 7 5.7613 3.4956 -0.1012 9 6 7.0828 2.8528 -0.1012 10 6 7.9305 3.4751 1.0153 11 7 7.8546 4.9384 0.9024 12 6 8.9949 5.6896 0.7996 13 1 9.8916 5.2556 0.3823 14 6 8.9968 7.0104 1.2263 15 7 9.6771 7.9171 0.5574 16 14 8.0339 7.5011 2.7499 17 1 8.9366 7.4961 3.9290 18 1 7.4715 8.8626 2.5628 19 1 6.9281 6.5345 2.9692 20 6 6.5333 5.5816 0.9081 21 6 5.6854 4.9589 -0.2142 22 7 3.4587 -0.6981 -0.0049 23 7 2.2199 -1.0424 0.0006 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9463 2.1353 -0.0006 28 1 5.5824 0.9746 0.0021 29 1 7.5688 3.0154 -1.0632 30 1 6.9696 1.7836 0.0782 31 1 8.9666 3.1533 0.9107 32 1 7.5440 3.1625 1.9854 33 1 9.6782 8.8402 0.8554 34 1 6.0496 5.4156 1.8706 35 1 6.6464 6.6515 0.7323 36 1 6.0718 5.2715 -1.1843 37 1 4.6489 5.2804 -0.1125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219938394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:57 Heat of formation + Delta-G solvation = 108.977289 kcal Electronic energy + Delta-G solvation = -22033.996671 eV Core-core repulsion = 18657.118957 eV Total energy + Delta-G solvation = -3376.877714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.25665 -41.57000 -38.85353 -36.50080 -35.76451 -34.96978 -33.50297 -32.22077 -30.99962 -28.95747 -28.60974 -25.48533 -25.03949 -23.76235 -23.09058 -22.40055 -20.70106 -19.71267 -18.77116 -18.25098 -17.72761 -17.50499 -16.94276 -16.52821 -16.16883 -15.99945 -15.48814 -15.29875 -15.17956 -14.77989 -14.42868 -14.18384 -14.04909 -13.85462 -13.50723 -12.93745 -12.75632 -12.53263 -12.29888 -12.23812 -12.09114 -12.05143 -11.91216 -11.44751 -11.26937 -10.93955 -10.66761 -10.02276 -9.40938 -8.86249 -8.22699 -5.37378 0.52825 1.03535 1.20964 1.36514 1.47864 1.53676 1.65205 2.14065 2.45590 2.57153 2.93854 3.38025 3.63735 3.73799 4.04881 4.11806 4.14235 4.25099 4.36609 4.40981 4.45801 4.56789 4.62143 4.66267 4.69482 4.78191 4.90214 5.02258 5.19651 5.36423 5.43084 5.64603 5.75595 5.86651 6.13336 6.66080 6.90490 7.26017 7.38689 7.63742 8.06386 8.94961 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039533 B = 0.003864 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.098441 B = 7245.239268 C = 7576.520786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.280 5.280 3 C -0.057 4.057 4 C 0.209 3.791 5 N -0.637 5.637 6 C 0.716 3.284 7 O -0.604 6.604 8 N -0.609 5.609 9 C 0.099 3.901 10 C 0.126 3.874 11 N -0.612 5.612 12 C -0.261 4.261 13 H 0.059 0.941 14 C -0.009 4.009 15 N -0.925 5.925 16 Si 0.891 3.109 17 H -0.303 1.303 18 H -0.297 1.297 19 H -0.241 1.241 20 C 0.131 3.869 21 C 0.123 3.877 22 N -0.313 5.313 23 N -0.089 5.089 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.216 0.784 28 H 0.423 0.577 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 -14.804 -1.947 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.078 5.078 3 C -0.211 4.211 4 C -0.022 4.022 5 N -0.291 5.291 6 C 0.417 3.583 7 O -0.484 6.484 8 N -0.344 5.344 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.336 5.336 12 C -0.390 4.390 13 H 0.077 0.923 14 C -0.207 4.207 15 N -0.568 5.568 16 Si 0.719 3.281 17 H -0.231 1.231 18 H -0.224 1.224 19 H -0.165 1.165 20 C 0.005 3.995 21 C -0.002 4.002 22 N -0.184 5.184 23 N -0.069 5.069 24 H 0.130 0.870 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.233 0.767 28 H 0.264 0.736 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.331 -15.759 -1.930 24.250 hybrid contribution 0.560 1.761 0.905 2.058 sum -17.770 -13.998 -1.025 22.645 Atomic orbital electron populations 1.22783 0.69151 1.07869 1.06953 1.47649 1.11021 1.03589 1.45506 1.23985 0.89374 0.95457 1.12238 1.18618 0.87377 0.89012 1.07164 1.41652 1.07081 1.03669 1.76658 1.15537 0.84427 0.80495 0.77841 1.90737 1.27417 1.71159 1.59094 1.47129 1.04807 1.07235 1.75226 1.22347 0.82079 0.97017 1.00988 1.21531 0.99746 0.82784 0.95877 1.44418 1.01229 1.02504 1.85483 1.18741 0.91906 0.93515 1.34825 0.92304 1.25641 0.98786 0.95856 1.00466 1.70189 1.47018 1.01804 1.37781 0.86710 0.79943 0.77586 0.83874 1.23138 1.22375 1.16487 1.21770 0.85406 0.96448 0.95925 1.22106 1.01267 0.77353 0.99457 1.74971 1.11224 1.09998 1.22205 1.78083 0.95188 1.13067 1.20520 0.87038 0.86483 0.85952 0.76722 0.73585 0.90171 0.87605 0.89826 0.94841 0.92862 0.95146 0.92230 0.90989 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.40 127.77 1.46 1.96 16 2 N -0.28 -5.51 3.77 -368.08 -1.39 -6.89 16 3 C -0.06 -1.39 10.48 83.47 0.88 -0.51 16 4 C 0.21 5.75 8.14 131.27 1.07 6.82 16 5 N -0.64 -16.42 5.38 -322.47 -1.73 -18.15 16 6 C 0.72 21.38 8.26 179.05 1.48 22.86 16 7 O -0.60 -20.26 13.03 -4.05 -0.05 -20.31 16 8 N -0.61 -18.30 2.95 -835.11 -2.46 -20.76 16 9 C 0.10 2.60 6.56 86.42 0.57 3.17 16 10 C 0.13 4.20 6.67 86.42 0.58 4.78 16 11 N -0.61 -26.52 2.71 -697.34 -1.89 -28.42 16 12 C -0.26 -13.73 9.85 84.03 0.83 -12.91 16 13 H 0.06 3.33 8.05 -2.91 -0.02 3.30 16 14 C -0.01 -0.52 4.81 84.86 0.41 -0.11 16 15 N -0.92 -55.11 13.97 21.65 0.30 -54.81 16 16 Si 0.89 43.01 26.44 68.60 1.81 44.83 16 17 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 18 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.24 -10.86 4.96 99.48 0.49 -10.37 16 20 C 0.13 5.29 4.57 86.57 0.40 5.69 16 21 C 0.12 4.13 6.62 86.57 0.57 4.70 16 22 N -0.31 -9.02 12.41 -55.52 -0.69 -9.70 16 23 N -0.09 -2.27 13.15 37.02 0.49 -1.78 16 24 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.22 5.14 6.02 -2.91 -0.02 5.12 16 28 H 0.42 8.96 6.30 -92.71 -0.58 8.38 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.11 1.97 5.61 -2.39 -0.01 1.96 16 31 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.03 1.26 6.78 -2.39 -0.02 1.25 16 35 H 0.06 2.64 5.55 -2.38 -0.01 2.62 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.09 3.07 6.99 -2.39 -0.02 3.05 16 Total: -1.00 -71.60 300.73 2.93 -68.66 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.32 Total: 10.88 kcal Atomic # 6 Polarization: 28.22 SS G_CDS: 8.23 Total: 36.45 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -7.37 Total: -140.51 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.81 Total: 44.83 kcal Total: -71.60 2.93 -68.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219938394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.642 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds