Wall clock time and date at job start Tue Mar 31 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00027 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00263 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00327 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46954 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47242 * 120.00258 * 14 12 10 17 17 H 1.48494 * 109.47552 * 240.00390 * 14 12 10 18 18 C 1.50691 * 109.47321 * 185.00677 * 3 2 1 19 19 C 1.38245 * 119.97219 * 279.72791 * 18 3 2 20 20 C 1.38202 * 120.02403 * 179.72346 * 19 18 3 21 21 C 1.38459 * 119.97347 * 0.53302 * 20 19 18 22 22 F 1.35100 * 120.02537 * 179.72701 * 21 20 19 23 23 C 1.38457 * 119.94958 * 359.73489 * 21 20 19 24 24 C 1.38201 * 119.97257 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 26 26 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 28 28 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 29 29 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 30 30 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 31 31 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 32 32 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 33 33 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 34 34 H 0.96994 * 120.00789 * 180.02562 * 13 12 10 35 35 H 1.08000 * 119.98882 * 359.97438 * 19 18 3 36 36 H 1.08005 * 120.01060 * 180.29124 * 20 19 18 37 37 H 1.08002 * 120.01141 * 179.97438 * 23 21 20 38 38 H 1.07997 * 119.98408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 1 -0.5865 4.3967 4.7342 12 6 -2.5697 5.1012 4.3789 13 7 -3.5580 5.1868 3.5154 14 14 -2.7542 5.8387 6.0852 15 1 -1.5083 5.6104 6.8605 16 1 -3.0043 7.2979 5.9695 17 1 -3.8963 5.1945 6.7821 18 6 3.5418 1.4444 -0.1240 19 6 4.3270 1.2086 0.9891 20 6 5.7043 1.2044 0.8755 21 6 6.2980 1.4473 -0.3515 22 9 7.6444 1.4488 -0.4627 23 6 5.5106 1.6888 -1.4646 24 6 4.1334 1.6876 -1.3495 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 2.2721 2.1231 1.9978 31 1 0.6963 3.2876 3.2666 32 1 -1.3609 4.6570 1.8993 33 1 -2.0152 3.1130 2.4959 34 1 -4.3824 5.6331 3.7642 35 1 3.8638 1.0236 1.9471 36 1 6.3175 1.0155 1.7444 37 1 5.9726 1.8788 -2.4221 38 1 3.5192 1.8764 -2.2175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227407142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:46 Heat of formation + Delta-G solvation = -83.027503 kcal Electronic energy + Delta-G solvation = -21193.856965 eV Core-core repulsion = 17756.440586 eV Total energy + Delta-G solvation = -3437.416379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.88888 -41.34118 -39.96867 -36.98736 -35.86653 -34.43537 -33.02050 -32.08556 -31.60145 -29.12077 -26.83056 -24.68532 -24.09918 -23.19370 -22.04404 -21.34191 -19.86046 -18.70517 -18.05565 -17.75127 -17.03585 -16.73549 -16.58964 -16.45103 -16.27706 -15.49008 -15.20377 -14.82597 -14.72488 -14.44568 -14.27490 -13.99292 -13.80243 -13.76231 -13.57264 -12.97273 -12.85799 -12.73243 -12.43617 -12.19281 -12.05692 -11.95932 -11.74178 -11.41281 -11.07497 -10.78080 -10.14053 -10.06477 -9.63323 -9.49962 -8.26438 -6.42218 0.08511 0.27050 1.44695 1.45799 1.58927 1.93437 2.34613 2.40871 2.60906 3.08806 3.27614 3.52689 3.59997 3.76688 3.96276 4.15952 4.18956 4.33078 4.38612 4.52208 4.71969 4.94208 4.96528 4.98163 5.06083 5.11633 5.15439 5.21377 5.24764 5.32313 5.42702 5.49723 5.55894 5.69885 5.75345 5.89427 5.89664 6.30723 6.70433 7.27513 7.37191 7.81834 8.85980 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.003361 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.094555 B = 8328.067419 C = 9065.504031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.207 3.793 4 H 0.077 0.923 5 N -0.729 5.729 6 C 0.694 3.306 7 O -0.633 6.633 8 N -0.727 5.727 9 C 0.288 3.712 10 C -0.553 4.553 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.279 1.279 18 C -0.101 4.101 19 C -0.083 4.083 20 C -0.149 4.149 21 C 0.079 3.921 22 F -0.149 7.149 23 C -0.151 4.151 24 C -0.081 4.081 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.406 0.594 31 H 0.402 0.598 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.268 0.732 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.296 -10.360 -5.434 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.102 3.898 4 H 0.095 0.905 5 N -0.387 5.387 6 C 0.394 3.606 7 O -0.515 6.515 8 N -0.381 5.381 9 C 0.165 3.835 10 C -0.591 4.591 11 H 0.101 0.899 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.807 3.193 15 H -0.177 1.177 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.102 4.102 19 C -0.101 4.101 20 C -0.168 4.168 21 C 0.060 3.940 22 F -0.127 7.127 23 C -0.169 4.169 24 C -0.100 4.100 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.243 0.757 31 H 0.237 0.763 32 H 0.002 0.998 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.452 -10.312 -6.304 22.901 hybrid contribution 0.061 0.593 1.085 1.238 sum 19.513 -9.719 -5.219 22.416 Atomic orbital electron populations 1.21718 0.96552 1.00274 1.01250 1.21915 0.95087 0.94999 1.03686 1.19652 0.89873 0.93721 0.86602 0.90488 1.45071 1.14979 1.61080 1.17544 1.16192 0.82633 0.78508 0.83237 1.90861 1.53497 1.66641 1.40480 1.45320 1.18790 1.59807 1.14136 1.18353 0.78651 0.90593 0.95909 1.21643 1.01654 1.37294 0.98488 0.89948 1.26035 0.94978 0.96157 1.02410 1.70143 1.05824 1.43575 1.37394 0.85126 0.78754 0.77602 0.77801 1.17681 1.20556 1.20508 1.19944 0.94026 1.01432 0.94765 1.20993 0.92460 0.97579 0.99111 1.21332 0.95783 1.02652 0.97001 1.18006 0.76773 1.03441 0.95769 1.91483 1.30124 1.94213 1.96920 1.21322 0.93892 1.02808 0.98904 1.21069 0.94012 0.97147 0.97750 0.94100 0.92400 0.95166 0.89154 0.90483 0.75680 0.76286 0.99773 0.99648 0.92311 0.83338 0.82858 0.82976 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.51 71.98 0.61 -3.56 16 2 C -0.12 -2.58 5.59 30.60 0.17 -2.41 16 3 C 0.21 4.86 2.46 44.24 0.11 4.97 16 4 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 5 N -0.73 -19.85 4.98 -461.41 -2.30 -22.15 16 6 C 0.69 27.59 7.13 179.06 1.28 28.87 16 7 O -0.63 -30.66 13.48 -4.01 -0.05 -30.72 16 8 N -0.73 -30.67 5.55 -482.29 -2.68 -33.35 16 9 C 0.29 15.83 5.43 85.63 0.46 16.30 16 10 C -0.55 -29.99 9.28 25.60 0.24 -29.75 16 11 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 12 C 0.00 0.20 5.46 84.65 0.46 0.67 16 13 N -0.93 -56.11 13.29 21.44 0.28 -55.83 16 14 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 15 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 C -0.10 -1.82 4.96 -19.86 -0.10 -1.92 16 19 C -0.08 -1.27 9.06 22.26 0.20 -1.07 16 20 C -0.15 -2.25 10.03 22.31 0.22 -2.02 16 21 C 0.08 1.37 7.30 22.37 0.16 1.54 16 22 F -0.15 -2.85 17.27 44.97 0.78 -2.08 16 23 C -0.15 -2.36 10.03 22.31 0.22 -2.13 16 24 C -0.08 -1.33 9.67 22.26 0.22 -1.12 16 25 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.10 5.65 -2.38 -0.01 1.09 16 28 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.41 8.41 6.87 -92.71 -0.64 7.78 16 31 H 0.40 14.02 8.34 -92.71 -0.77 13.24 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.15 1.73 6.90 -2.91 -0.02 1.71 16 36 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.15 2.01 8.04 -2.91 -0.02 1.99 16 Total: -1.00 -71.41 324.10 2.00 -69.41 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -0.32 Total: 22.08 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.26 Total: 8.36 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.69 Total: -111.32 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.41 2.00 -69.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227407142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds