Wall clock time and date at job start Tue Mar 31 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47593 * 2 1 4 4 C 1.46906 * 110.99605 * 299.29946 * 3 2 1 5 5 C 1.50699 * 109.47043 * 293.53085 * 4 3 2 6 6 H 1.07998 * 119.99944 * 354.96966 * 5 4 3 7 7 C 1.37879 * 119.99500 * 174.96676 * 5 4 3 8 8 N 1.31510 * 120.00612 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99664 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47347 * 90.00097 * 9 7 5 11 11 H 1.48497 * 109.47359 * 210.00134 * 9 7 5 12 12 H 1.48507 * 109.47399 * 329.99895 * 9 7 5 13 13 C 1.46900 * 111.00200 * 63.24965 * 3 2 1 14 14 C 1.50699 * 109.46620 * 66.04729 * 13 3 2 15 15 C 1.38075 * 120.33382 * 259.97800 * 14 13 3 16 16 N 1.31931 * 120.86116 * 180.02562 * 15 14 13 17 17 C 1.32488 * 121.61346 * 0.02562 * 16 15 14 18 18 S 1.76209 * 119.70718 * 180.02562 * 17 16 15 19 19 C 1.81400 * 103.00085 * 359.97438 * 18 17 16 20 20 C 1.39153 * 120.57962 * 359.72117 * 17 16 15 21 21 C 1.38305 * 119.09412 * 0.53231 * 20 17 16 22 22 C 1.50709 * 120.74216 * 179.75141 * 21 20 17 23 23 H 1.09002 * 109.47090 * 300.60003 * 1 2 3 24 24 H 1.08999 * 109.46744 * 60.60053 * 1 2 3 25 25 H 1.09001 * 109.47172 * 180.60130 * 1 2 3 26 26 H 1.09002 * 109.47257 * 239.99490 * 2 1 3 27 27 H 1.09004 * 109.47045 * 120.00379 * 2 1 3 28 28 H 1.09002 * 109.47203 * 53.53529 * 4 3 2 29 29 H 1.09003 * 109.46559 * 173.53192 * 4 3 2 30 30 H 0.96994 * 120.00285 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46876 * 306.05088 * 13 3 2 32 32 H 1.08995 * 109.47213 * 186.04940 * 13 3 2 33 33 H 1.07998 * 119.56735 * 0.02562 * 15 14 13 34 34 H 1.09000 * 109.47247 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47566 * 300.00369 * 19 18 17 36 36 H 1.09010 * 109.46905 * 60.00186 * 19 18 17 37 37 H 1.08006 * 120.45188 * 180.28801 * 20 17 16 38 38 H 1.09000 * 109.47206 * 269.72131 * 22 21 20 39 39 H 1.09004 * 109.46572 * 149.72026 * 22 21 20 40 40 H 1.08998 * 109.46757 * 29.72251 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5625 2.1049 -1.1961 5 6 2.2068 1.5063 -2.4198 6 1 2.9488 0.7288 -2.3137 7 6 1.8488 1.9511 -3.6748 8 7 0.9455 2.8981 -3.8040 9 14 2.6469 1.2085 -5.1917 10 1 1.8499 0.0422 -5.6497 11 1 2.7001 2.2264 -6.2716 12 1 4.0253 0.7666 -4.8598 13 6 1.6133 2.0871 1.2246 14 6 2.3003 1.4639 2.4124 15 6 1.6258 0.5665 3.2164 16 7 2.2169 0.0151 4.2590 17 6 3.4720 0.2976 4.5757 18 16 4.2122 -0.4687 5.9791 19 6 2.8793 -1.5181 6.6215 20 6 4.2128 1.1894 3.8060 21 6 3.6176 1.7872 2.7099 22 6 4.3836 2.7628 1.8540 23 1 -0.3633 0.5231 0.8846 24 1 -0.3633 0.5045 -0.8953 25 1 -0.3633 -1.0276 0.0108 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.4788 2.0214 -1.2783 29 1 1.8409 3.1558 -1.1161 30 1 0.6934 3.2108 -4.6868 31 1 0.5330 2.0083 1.3471 32 1 1.8951 3.1374 1.1517 33 1 0.6011 0.3127 2.9887 34 1 3.2299 -2.0501 7.5059 35 1 2.0234 -0.8972 6.8860 36 1 2.5839 -2.2381 5.8582 37 1 5.2372 1.4147 4.0633 38 1 4.2444 3.7725 2.2404 39 1 4.0168 2.7124 0.8287 40 1 5.4434 2.5091 1.8737 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232345324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:30 Heat of formation + Delta-G solvation = 28.004343 kcal Electronic energy + Delta-G solvation = -19842.387395 eV Core-core repulsion = 16975.998894 eV Total energy + Delta-G solvation = -2866.388501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22063 -37.24714 -33.96088 -32.72238 -31.55299 -29.50588 -29.06017 -28.00213 -26.96280 -24.94400 -23.27415 -22.51857 -21.63622 -19.27236 -17.41309 -16.78095 -16.27644 -15.31057 -15.12924 -14.89709 -14.80781 -14.33675 -13.99082 -13.79518 -13.45034 -13.07463 -12.85289 -12.70604 -12.61246 -12.30710 -12.11047 -11.86882 -11.46443 -11.30662 -11.13921 -10.98801 -10.74885 -10.62352 -10.50212 -10.09535 -9.90670 -9.58701 -9.42409 -9.28822 -9.16049 -8.46316 -7.55750 -7.23403 -6.05658 -4.06712 1.11489 1.38232 1.45261 2.20237 3.29662 3.36462 3.40518 3.76429 4.40906 4.60122 4.90370 4.99143 5.02888 5.08530 5.11272 5.19053 5.29940 5.35457 5.60686 5.65851 5.72497 5.77924 5.86801 5.87941 5.97888 6.04448 6.13892 6.18108 6.37600 6.42521 6.65536 6.69136 6.79788 6.89062 7.24736 7.39598 7.77406 7.84574 8.04092 8.14465 8.50273 9.01560 9.57777 11.04832 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.003859 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.468122 B = 7253.361053 C = 7501.794874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 N -0.527 5.527 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.089 3.911 14 C -0.115 4.115 15 C 0.116 3.884 16 N -0.497 5.497 17 C 0.112 3.888 18 S -0.097 6.097 19 C -0.126 4.126 20 C -0.153 4.153 21 C -0.002 4.002 22 C -0.124 4.124 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.005 0.995 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -4.123 17.143 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.251 5.251 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.039 4.039 14 C -0.120 4.120 15 C -0.044 4.044 16 N -0.210 5.210 17 C -0.136 4.136 18 S 0.141 5.859 19 C -0.295 4.295 20 C -0.179 4.179 21 C -0.012 4.012 22 C -0.180 4.180 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.170 0.830 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.338 -4.571 18.041 19.110 hybrid contribution -1.451 0.061 -1.916 2.404 sum 2.887 -4.510 16.125 16.991 Atomic orbital electron populations 1.22390 0.99321 1.00977 1.02041 1.21944 0.92129 0.91354 1.01272 1.62396 1.59224 1.01950 1.01480 1.19818 0.94714 0.93530 0.85605 1.21123 1.22508 1.20792 0.89887 0.91940 1.24963 0.95252 0.95214 0.99075 1.69945 1.31787 1.28647 1.23462 0.86541 0.79863 0.78757 0.82525 1.20796 1.21308 1.19782 1.20975 0.96408 0.98063 0.88483 1.20842 0.94752 0.98562 0.97854 1.22544 0.99602 0.92436 0.89776 1.67932 1.09127 1.25568 1.18329 1.22765 0.93641 0.98268 0.98925 1.85353 1.20967 1.52106 1.27506 1.23381 1.00333 1.01847 1.03908 1.21482 1.00956 0.99123 0.96345 1.20125 0.93294 0.94801 0.92983 1.20949 0.99282 0.96487 1.01305 0.93799 0.91045 0.93428 0.90098 0.93258 0.97757 0.95672 0.92947 0.94224 0.90206 0.83011 0.88274 0.89643 0.89569 0.84812 0.91029 0.88055 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.25 37.16 0.34 -2.93 16 2 C 0.06 1.16 5.64 -3.83 -0.02 1.14 16 3 N -0.53 -10.52 4.12 -237.51 -0.98 -11.49 16 4 C 0.19 4.57 4.50 -4.97 -0.02 4.54 16 5 C -0.50 -13.54 8.41 -34.44 -0.29 -13.83 16 6 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.09 1.50 4.07 -4.98 -0.02 1.48 16 14 C -0.12 -1.78 4.59 -104.45 -0.48 -2.26 16 15 C 0.12 1.73 9.80 -17.57 -0.17 1.56 16 16 N -0.50 -7.47 9.43 -12.11 -0.11 -7.58 16 17 C 0.11 1.61 7.00 -16.93 -0.12 1.49 16 18 S -0.10 -1.14 22.55 -107.50 -2.42 -3.57 16 19 C -0.13 -1.18 10.02 101.05 1.01 -0.17 16 20 C -0.15 -2.13 9.54 -39.22 -0.37 -2.50 16 21 C 0.00 -0.03 5.91 -104.36 -0.62 -0.65 16 22 C -0.12 -1.67 9.36 36.01 0.34 -1.33 16 23 H 0.04 0.69 6.04 -51.93 -0.31 0.37 16 24 H 0.07 1.44 6.31 -51.93 -0.33 1.12 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.68 6.97 -51.93 -0.36 1.32 16 27 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 28 H 0.00 0.12 6.01 -51.93 -0.31 -0.19 16 29 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 0.65 5.96 -51.93 -0.31 0.34 16 32 H 0.08 1.33 7.16 -51.93 -0.37 0.96 16 33 H 0.15 2.05 7.75 -52.49 -0.41 1.64 16 34 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.64 6.53 -51.93 -0.34 1.30 16 40 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -28.78 333.42 -9.26 -38.04 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.97 Total: 0.55 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.52 Total: -12.01 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.36 Total: -44.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.42 Total: -3.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.78 -9.26 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232345324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.046 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds