Wall clock time and date at job start Tue Mar 31 2020 03:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.52999 * 109.47445 * 274.75302 * 3 2 1 5 5 H 1.09003 * 112.73632 * 316.02918 * 4 3 2 6 6 C 1.53490 * 113.46763 * 86.85125 * 4 3 2 7 7 C 1.53242 * 83.43051 * 140.67886 * 6 4 3 8 8 N 1.47064 * 113.46528 * 185.29035 * 4 3 2 9 9 C 1.36933 * 136.06036 * 38.06587 * 8 4 3 10 10 H 1.07998 * 120.00436 * 354.64594 * 9 8 4 11 11 C 1.38819 * 120.00213 * 174.92595 * 9 8 4 12 12 N 1.31620 * 119.99721 * 359.72421 * 11 9 8 13 13 Si 1.86797 * 120.00141 * 179.72337 * 11 9 8 14 14 H 1.48499 * 109.47012 * 89.99911 * 13 11 9 15 15 H 1.48502 * 109.46911 * 210.00155 * 13 11 9 16 16 H 1.48499 * 109.47149 * 329.99571 * 13 11 9 17 17 C 1.34775 * 119.99693 * 180.02562 * 2 1 3 18 18 O 1.21278 * 119.99553 * 175.09082 * 17 2 1 19 19 C 1.50699 * 120.00384 * 355.08459 * 17 2 1 20 20 N 1.46500 * 109.47073 * 179.97438 * 19 17 2 21 21 N 1.28884 * 125.44345 * 90.00595 * 20 19 17 22 22 C 1.31037 * 107.91539 * 179.97438 * 21 20 19 23 23 N 1.33320 * 106.90027 * 359.97438 * 22 21 20 24 24 N 1.28775 * 125.45360 * 269.69766 * 20 19 17 25 25 H 1.08994 * 109.47536 * 89.99347 * 1 2 3 26 26 H 1.09002 * 109.47273 * 209.99950 * 1 2 3 27 27 H 1.09004 * 109.46946 * 329.98918 * 1 2 3 28 28 H 1.08997 * 109.46843 * 154.74438 * 3 2 1 29 29 H 1.09001 * 109.47170 * 34.75506 * 3 2 1 30 30 H 1.08992 * 114.21114 * 254.43578 * 6 4 3 31 31 H 1.09003 * 114.20558 * 27.06683 * 6 4 3 32 32 H 1.08998 * 113.38451 * 219.29776 * 7 6 4 33 33 H 1.08995 * 113.46921 * 88.92464 * 7 6 4 34 34 H 0.96993 * 120.00151 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.47174 * 300.00492 * 19 17 2 36 36 H 1.09007 * 109.46630 * 60.00237 * 19 17 2 37 37 H 1.07996 * 126.55267 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3490 1.7702 -1.4375 5 1 2.6348 0.9798 -2.1315 6 6 1.1579 2.6090 -1.9210 7 6 2.2492 3.4542 -2.5866 8 7 3.1797 2.9784 -1.5517 9 6 4.3160 3.4539 -0.9536 10 1 4.7595 2.9137 -0.1303 11 6 4.8947 4.6335 -1.4016 12 7 4.3542 5.2920 -2.4049 13 14 6.4404 5.2862 -0.5806 14 1 7.6361 4.7312 -1.2643 15 1 6.4613 6.7683 -0.6719 16 1 6.4526 4.8782 0.8472 17 6 2.1388 -1.1672 -0.0005 18 8 3.3483 -1.1691 -0.0904 19 6 1.3895 -2.4700 0.1107 20 7 2.3407 -3.5840 0.0867 21 7 2.9041 -4.1081 1.1205 22 6 3.6855 -5.0752 0.7069 23 7 3.5760 -5.1209 -0.6211 24 7 2.7432 -4.1998 -0.9703 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 3.1840 1.1186 0.4385 29 1 1.6479 2.0055 0.5858 30 1 0.5016 2.0916 -2.6206 31 1 0.6196 3.1218 -1.1239 32 1 2.0566 4.5259 -2.5375 33 1 2.5075 3.1172 -3.5905 34 1 4.7587 6.1160 -2.7182 35 1 0.8307 -2.4889 1.0464 36 1 0.6987 -2.5644 -0.7272 37 1 4.3007 -5.7135 1.3237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234365793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:31 Heat of formation + Delta-G solvation = 143.038098 kcal Electronic energy + Delta-G solvation = -21860.824972 eV Core-core repulsion = 18485.424246 eV Total energy + Delta-G solvation = -3375.400726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.35299 -41.27148 -39.78307 -36.68175 -36.03255 -34.32570 -34.10908 -31.28979 -29.93866 -29.23695 -27.32919 -25.45838 -24.99489 -24.72285 -23.46290 -21.12435 -20.73727 -19.09102 -18.83015 -18.60529 -17.56584 -17.22484 -16.93105 -16.80333 -16.09441 -15.83476 -15.55098 -14.93758 -14.77245 -14.42952 -14.12430 -13.73859 -13.65410 -13.45875 -13.17798 -13.01746 -12.94028 -12.67262 -12.48227 -12.27293 -12.24376 -12.05314 -11.86792 -11.71909 -11.61666 -11.27238 -10.92961 -10.89644 -9.73452 -8.94835 -7.96137 -5.28475 0.09255 0.84216 1.25446 1.31246 1.39572 1.42515 1.50452 1.88335 2.43835 3.16143 3.17611 3.25417 3.45004 3.48170 3.81704 3.84399 4.01003 4.16711 4.27229 4.38132 4.51450 4.69312 4.72028 4.77420 4.83260 4.92270 4.97021 5.03645 5.05869 5.10929 5.20064 5.39606 5.51264 5.71051 5.91071 6.22839 6.88348 6.90944 7.30290 7.56148 8.57411 9.22025 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.004171 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.704515 B = 6711.226424 C = 7504.069599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.593 5.593 3 C 0.131 3.869 4 C 0.131 3.869 5 H 0.021 0.979 6 C -0.121 4.121 7 C 0.146 3.854 8 N -0.632 5.632 9 C -0.226 4.226 10 H 0.074 0.926 11 C -0.063 4.063 12 N -0.951 5.951 13 Si 0.973 3.027 14 H -0.292 1.292 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.491 3.509 18 O -0.587 6.587 19 C 0.112 3.888 20 N -0.124 5.124 21 N -0.316 5.316 22 C 0.147 3.853 23 N -0.315 5.315 24 N -0.074 5.074 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.006 0.994 34 H 0.249 0.751 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 -16.660 8.395 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.325 5.325 3 C 0.007 3.993 4 C 0.024 3.976 5 H 0.038 0.962 6 C -0.159 4.159 7 C 0.020 3.980 8 N -0.359 5.359 9 C -0.355 4.355 10 H 0.092 0.908 11 C -0.256 4.256 12 N -0.600 5.600 13 Si 0.801 3.199 14 H -0.219 1.219 15 H -0.213 1.213 16 H -0.193 1.193 17 C 0.278 3.722 18 O -0.467 6.467 19 C -0.010 4.010 20 N -0.037 5.037 21 N -0.166 5.166 22 C -0.156 4.156 23 N -0.185 5.185 24 N -0.068 5.068 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.208 0.792 36 H 0.204 0.796 37 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -15.199 -16.155 7.881 23.539 hybrid contribution 1.965 0.584 0.275 2.068 sum -13.234 -15.571 8.155 22.002 Atomic orbital electron populations 1.22454 0.75051 1.06286 1.04632 1.47820 1.09409 1.03987 1.71286 1.21532 0.96504 0.84213 0.97079 1.22510 0.90591 0.89565 0.94914 0.96195 1.23458 0.94589 0.97132 1.00745 1.21946 0.87580 0.97897 0.90580 1.46103 1.28208 1.18357 1.43208 1.19185 1.01114 1.04396 1.10759 0.90811 1.25585 1.02124 0.98746 0.99187 1.70005 1.42286 1.18036 1.29652 0.85160 0.79221 0.77171 0.78322 1.21941 1.21277 1.19290 1.21014 0.87690 0.86669 0.76875 1.90836 1.16965 1.87596 1.51271 1.22581 0.88049 0.77531 1.12870 1.49863 1.29289 1.23576 1.00978 1.74670 1.13030 1.12106 1.16779 1.28179 0.99499 0.97132 0.90756 1.75836 1.13304 1.15553 1.13836 1.78930 1.09602 1.03824 1.14426 0.90056 0.86999 0.88876 0.94087 0.88071 0.88514 0.88248 0.94402 0.97595 0.94176 0.79214 0.79612 0.70934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.30 127.77 1.32 1.79 16 2 N -0.59 -13.15 2.87 -846.76 -2.43 -15.59 16 3 C 0.13 4.33 5.41 86.38 0.47 4.79 16 4 C 0.13 5.22 4.32 41.79 0.18 5.41 16 5 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 6 C -0.12 -3.92 8.00 30.84 0.25 -3.68 16 7 C 0.15 6.90 7.26 83.09 0.60 7.51 16 8 N -0.63 -33.16 3.65 -714.42 -2.61 -35.77 16 9 C -0.23 -13.24 10.55 84.04 0.89 -12.35 16 10 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 11 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 12 N -0.95 -58.92 11.65 21.65 0.25 -58.67 16 13 Si 0.97 47.64 29.55 68.60 2.03 49.67 16 14 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 C 0.49 12.82 7.73 87.66 0.68 13.50 16 18 O -0.59 -23.84 15.98 -3.02 -0.05 -23.89 16 19 C 0.11 1.61 5.54 85.63 0.47 2.08 16 20 N -0.12 -2.96 3.49 -190.98 -0.67 -3.62 16 21 N -0.32 -7.57 12.13 -61.10 -0.74 -8.31 16 22 C 0.15 3.18 13.26 180.68 2.40 5.57 16 23 N -0.31 -8.79 12.50 -61.11 -0.76 -9.55 16 24 N -0.07 -2.12 13.25 37.02 0.49 -1.62 16 25 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.11 -0.03 6.44 -2.39 -0.02 -0.04 16 27 H 0.09 0.66 7.94 -2.39 -0.02 0.64 16 28 H 0.04 1.73 7.35 -2.39 -0.02 1.71 16 29 H 0.10 2.94 7.69 -2.39 -0.02 2.92 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.82 7.93 -2.39 -0.02 2.80 16 32 H 0.04 1.98 7.38 -2.39 -0.02 1.96 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.19 0.91 7.58 -2.39 -0.02 0.89 16 36 H 0.19 1.11 8.05 -2.38 -0.02 1.09 16 37 H 0.28 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -91.42 321.41 4.31 -87.11 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.08 Total: -1.10 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 7.72 Total: 21.35 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -6.47 Total: -133.14 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -91.42 4.31 -87.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234365793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.144 kcal (2) G-P(sol) polarization free energy of solvation -91.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds