Wall clock time and date at job start Tue Mar 31 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35731 * 116.99815 * 180.02562 * 3 2 1 5 5 N 1.32222 * 119.69528 * 0.02562 * 4 3 2 6 6 C 1.31970 * 121.67091 * 179.97438 * 5 4 3 7 7 C 1.38061 * 120.87816 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.34563 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47353 * 89.99561 * 8 7 6 10 10 C 1.47483 * 110.99887 * 265.97099 * 9 8 7 11 11 C 1.53516 * 87.93369 * 221.29256 * 10 9 8 12 12 C 1.50699 * 114.34249 * 139.68438 * 11 10 9 13 13 H 1.08005 * 119.99792 * 266.08156 * 12 11 10 14 14 C 1.37875 * 120.00190 * 86.07600 * 12 11 10 15 15 N 1.31510 * 119.99691 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00023 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46902 * 90.00487 * 16 14 12 18 18 H 1.48496 * 109.46847 * 210.00315 * 16 14 12 19 19 H 1.48499 * 109.47052 * 330.00556 * 16 14 12 20 20 C 1.47483 * 111.00298 * 170.00363 * 9 8 7 21 21 C 1.38792 * 119.31000 * 359.97438 * 7 6 5 22 22 C 1.38579 * 118.46181 * 359.76182 * 21 7 6 23 23 F 1.35105 * 120.46672 * 180.24403 * 22 21 7 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08001 * 119.56158 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47231 * 209.99318 * 8 7 6 31 31 H 1.08997 * 109.47429 * 329.99539 * 8 7 6 32 32 H 1.08994 * 113.48022 * 336.06500 * 10 9 8 33 33 H 1.09000 * 113.47637 * 106.52948 * 10 9 8 34 34 H 1.09001 * 114.17223 * 272.37992 * 11 10 9 35 35 H 0.97008 * 120.00126 * 180.02562 * 15 14 12 36 36 H 1.09004 * 113.46999 * 253.46799 * 20 9 8 37 37 H 1.08994 * 113.47238 * 23.92913 * 20 9 8 38 38 H 1.07992 * 120.77125 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 7 4.1518 0.4724 -0.0015 6 6 5.4653 0.6002 -0.0026 7 6 6.0558 1.8481 -0.0022 8 6 7.5569 1.9800 -0.0040 9 7 8.0430 2.0241 -1.3895 10 6 8.4290 0.6798 -1.8572 11 6 9.6500 1.3245 -2.5283 12 6 10.9208 0.5238 -2.4064 13 1 11.6107 0.7252 -1.6002 14 6 11.2028 -0.4658 -3.3240 15 7 10.3629 -0.7107 -4.3059 16 14 12.7785 -1.4578 -3.1733 17 1 12.5310 -2.6549 -2.3302 18 1 13.2244 -1.8867 -4.5233 19 1 13.8326 -0.6204 -2.5466 20 6 9.4710 2.3896 -1.4374 21 6 5.2524 2.9799 -0.0011 22 6 3.8767 2.8133 -0.0056 23 9 3.0566 3.8870 -0.0098 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 6.0865 -0.2833 -0.0038 30 1 7.8416 2.8980 0.5103 31 1 7.9975 1.1249 0.5085 32 1 8.6883 -0.0035 -1.0486 33 1 7.7225 0.2469 -2.5654 34 1 9.4643 1.6860 -3.5397 35 1 10.5611 -1.4073 -4.9513 36 1 9.6475 3.4059 -1.7897 37 1 10.0083 2.1627 -0.5166 38 1 5.6893 3.9675 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236688858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:42 Heat of formation + Delta-G solvation = -34.563245 kcal Electronic energy + Delta-G solvation = -21187.313933 eV Core-core repulsion = 17751.999123 eV Total energy + Delta-G solvation = -3435.314811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.97735 -41.75876 -40.59232 -39.16250 -34.99245 -34.03158 -33.01456 -31.94389 -29.86275 -27.35789 -26.52681 -25.55437 -24.72661 -23.43640 -22.57809 -20.44169 -19.71311 -18.74198 -18.71518 -17.95674 -17.69008 -16.71556 -16.45627 -16.39724 -16.16949 -15.74211 -15.52702 -14.91231 -14.68449 -14.61201 -14.17070 -13.90292 -13.61682 -13.34139 -13.30398 -13.27274 -13.04909 -12.80091 -12.52360 -12.40207 -12.05847 -11.80253 -11.62499 -11.23300 -10.89169 -10.87893 -10.74109 -10.46416 -9.70112 -9.40761 -8.12466 -6.23528 -0.18418 -0.00863 1.44640 1.46354 1.56020 1.78853 2.40958 2.45991 2.93177 3.17283 3.18826 3.36918 3.57733 3.84927 3.95697 4.04052 4.12086 4.17300 4.32686 4.35433 4.41267 4.55744 4.64984 4.72789 4.78795 4.81744 4.90840 4.91106 5.02442 5.05704 5.16644 5.29790 5.32082 5.52843 5.66748 5.88682 6.05080 6.32098 6.40939 6.55316 6.87069 7.45433 8.97076 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.003440 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.803585 B = 8137.169582 C = 8834.120973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 O -0.316 6.316 4 C 0.279 3.721 5 N -0.523 5.523 6 C 0.135 3.865 7 C -0.123 4.123 8 C 0.065 3.935 9 N -0.481 5.481 10 C 0.017 3.983 11 C 0.017 3.983 12 C -0.527 4.527 13 H 0.063 0.937 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.013 3.987 21 C -0.051 4.051 22 C 0.015 3.985 23 F -0.131 7.131 24 H 0.102 0.898 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.175 0.825 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 3.282 11.750 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.224 6.224 4 C 0.099 3.901 5 N -0.246 5.246 6 C -0.021 4.021 7 C -0.126 4.126 8 C -0.064 4.064 9 N -0.204 5.204 10 C -0.112 4.112 11 C -0.002 4.002 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.781 3.219 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.007 4.007 23 F -0.109 7.109 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.192 0.808 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.043 2.970 11.273 19.031 hybrid contribution 1.434 -0.404 0.054 1.491 sum -13.609 2.566 11.327 17.891 Atomic orbital electron populations 1.21838 0.90675 1.04433 1.03388 1.22882 0.96522 0.79601 1.02517 1.86271 1.15684 1.32665 1.87760 1.20004 0.85466 0.89068 0.95581 1.67469 1.06872 1.31353 1.18940 1.22683 0.88621 0.98172 0.92627 1.20559 0.97289 0.92684 1.02086 1.21560 0.89289 1.03725 0.91795 1.68850 1.17265 1.16021 1.18215 1.23879 0.97812 0.90874 0.98639 1.20038 0.93324 0.93272 0.93533 1.21394 1.05802 1.17516 1.11773 0.91910 1.25818 0.99599 0.98426 0.94675 1.70101 1.37943 1.32573 1.15594 0.85597 0.80052 0.79042 0.77217 1.19967 1.21410 1.18877 1.23847 0.88185 0.99975 0.99575 1.21605 0.89327 1.01947 0.94859 1.17733 0.88931 0.81559 1.12468 1.91491 1.71886 1.53046 1.94522 0.87901 0.91353 0.91761 0.91296 0.92017 0.80832 0.87895 0.91536 0.92057 0.94122 0.95665 0.92995 0.90703 0.91076 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.06 1.26 6.03 71.98 0.43 1.69 16 3 O -0.32 -8.73 9.99 -90.54 -0.90 -9.64 16 4 C 0.28 8.20 7.50 84.84 0.64 8.83 16 5 N -0.52 -15.26 9.22 -308.76 -2.85 -18.10 16 6 C 0.13 3.71 10.85 84.63 0.92 4.63 16 7 C -0.12 -3.27 5.48 -19.77 -0.11 -3.38 16 8 C 0.06 1.74 4.96 85.56 0.42 2.17 16 9 N -0.48 -17.14 6.32 -932.50 -5.89 -23.03 16 10 C 0.02 0.73 7.28 83.57 0.61 1.34 16 11 C 0.02 0.84 3.76 -11.19 -0.04 0.80 16 12 C -0.53 -27.47 8.83 25.60 0.23 -27.24 16 13 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.75 5.46 84.65 0.46 1.22 16 15 N -0.92 -53.18 13.26 21.45 0.28 -52.90 16 16 Si 0.96 41.95 29.54 68.60 2.03 43.97 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 C 0.01 0.47 7.25 83.57 0.61 1.08 16 21 C -0.05 -1.28 9.84 22.48 0.22 -1.06 16 22 C 0.02 0.43 7.35 22.56 0.17 0.59 16 23 F -0.13 -3.71 17.13 44.97 0.77 -2.94 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.40 8.11 -2.39 -0.02 1.39 16 28 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.17 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.10 2.29 8.03 -2.39 -0.02 2.27 16 31 H 0.07 1.72 7.25 -2.39 -0.02 1.70 16 32 H 0.06 2.51 7.38 -2.39 -0.02 2.50 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.39 8.11 -2.39 -0.02 1.38 16 35 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 36 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 38 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -61.62 329.44 -0.21 -61.83 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.05 Total: 11.53 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.29 Total: -10.73 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -8.45 Total: -94.03 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.90 Total: -9.64 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.77 Total: -2.94 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -61.62 -0.21 -61.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236688858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.269 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds