Wall clock time and date at job start Tue Mar 31 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46827 * 2 1 4 4 C 1.46496 * 119.99904 * 75.05329 * 3 2 1 5 5 C 1.53005 * 109.46775 * 89.99887 * 4 3 2 6 6 N 1.46503 * 109.47046 * 180.02562 * 5 4 3 7 7 C 1.36940 * 120.00177 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00042 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00017 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00023 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47064 * 89.99462 * 11 9 7 13 13 H 1.48497 * 109.47000 * 209.99882 * 11 9 7 14 14 H 1.48506 * 109.46999 * 329.99953 * 11 9 7 15 15 C 1.34778 * 119.99888 * 255.05369 * 3 2 1 16 16 O 1.21552 * 120.00021 * 183.71514 * 15 3 2 17 17 C 1.47853 * 119.99931 * 3.71400 * 15 3 2 18 18 C 1.39594 * 120.13454 * 22.69402 * 17 15 3 19 19 C 1.37944 * 119.90324 * 179.76774 * 18 17 15 20 20 C 1.38338 * 120.17433 * 0.50831 * 19 18 17 21 21 C 1.38549 * 120.27124 * 359.74276 * 20 19 18 22 22 F 1.35099 * 119.95737 * 180.02562 * 21 20 19 23 23 C 1.38216 * 120.08721 * 0.02562 * 21 20 19 24 24 H 1.08991 * 109.47230 * 59.99898 * 1 2 3 25 25 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46867 * 299.99675 * 1 2 3 27 27 H 1.09002 * 109.46867 * 240.00325 * 2 1 3 28 28 H 1.08999 * 109.47408 * 119.99814 * 2 1 3 29 29 H 1.08999 * 109.47493 * 330.00334 * 4 3 2 30 30 H 1.09001 * 109.47434 * 209.99432 * 4 3 2 31 31 H 1.09003 * 109.47244 * 299.99725 * 5 4 3 32 32 H 1.08999 * 109.47234 * 60.00193 * 5 4 3 33 33 H 0.97001 * 119.99643 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00217 * 180.02562 * 10 9 7 35 35 H 1.08005 * 120.04243 * 0.02562 * 18 17 15 36 36 H 1.08004 * 119.91094 * 180.23121 * 19 18 17 37 37 H 1.08002 * 119.86438 * 179.76807 * 20 19 18 38 38 H 1.08001 * 120.08259 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9539 2.1809 1.2258 5 6 3.2455 1.9947 2.0245 6 7 3.1810 2.7939 3.2507 7 6 4.2313 2.7861 4.1293 8 1 5.1071 2.1904 3.9185 9 6 4.1699 3.5429 5.2913 10 7 3.1022 4.2684 5.5485 11 14 5.6024 3.5316 6.4901 12 1 6.5559 4.6123 6.1322 13 1 5.0962 3.7543 7.8683 14 1 6.2939 2.2191 6.4228 15 6 2.5267 1.9163 -1.1277 16 8 2.9936 3.0385 -1.1112 17 6 2.5166 1.1382 -2.3849 18 6 1.6038 0.0961 -2.5568 19 6 1.5953 -0.6236 -3.7336 20 6 2.4959 -0.3222 -4.7395 21 6 3.4084 0.7073 -4.5746 22 9 4.2846 0.9966 -5.5613 23 6 3.4234 1.4386 -3.4019 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.1048 1.8563 1.8273 30 1 1.8350 3.2332 0.9674 31 1 3.3645 0.9425 2.2830 32 1 4.0947 2.3194 1.4231 33 1 2.3944 3.3292 3.4398 34 1 3.0594 4.7976 6.3603 35 1 0.9026 -0.1436 -1.7711 36 1 0.8867 -1.4275 -3.8681 37 1 2.4873 -0.8913 -5.6573 38 1 4.1345 2.2413 -3.2736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268431961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:28 Heat of formation + Delta-G solvation = -7.482903 kcal Electronic energy + Delta-G solvation = -21361.276897 eV Core-core repulsion = 17927.136378 eV Total energy + Delta-G solvation = -3434.140519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.16214 -40.75917 -38.35796 -36.51773 -34.71870 -32.27105 -31.52778 -30.72464 -30.31474 -27.73950 -24.60782 -23.87084 -22.97688 -22.87071 -21.51775 -19.69110 -18.00594 -17.32274 -17.13970 -16.64284 -16.16548 -15.87779 -15.57630 -15.15251 -14.55524 -14.31257 -14.06090 -13.92526 -13.59967 -13.36413 -13.29271 -12.94376 -12.76474 -12.53636 -12.21251 -11.73165 -11.61537 -11.27839 -11.08457 -10.97746 -10.88065 -10.66667 -10.10578 -9.89246 -9.70445 -9.44366 -8.99299 -8.85759 -8.59752 -6.91960 -5.74864 -3.04067 0.46405 0.81644 2.64241 2.89169 3.44284 3.45895 3.50780 3.52302 3.90593 4.21567 4.41618 4.57692 4.62939 4.64435 4.84437 4.93547 4.96682 5.16401 5.30127 5.47604 5.50610 5.57709 5.61349 5.64811 5.73071 5.77985 5.83664 5.90925 6.00601 6.03787 6.13279 6.45389 6.54039 6.73932 6.90286 7.40858 7.71928 8.16563 8.43660 9.54627 10.10512 10.45709 11.48082 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.003461 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.806681 B = 8088.626180 C = 8731.634347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 N -0.596 5.596 4 C 0.108 3.892 5 C 0.142 3.858 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.552 3.448 16 O -0.522 6.522 17 C -0.096 4.096 18 C -0.135 4.135 19 C -0.100 4.100 20 C -0.135 4.135 21 C 0.091 3.909 22 F -0.137 7.137 23 C -0.098 4.098 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -13.700 -20.272 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.055 4.055 3 N -0.329 5.329 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.340 3.660 16 O -0.399 6.399 17 C -0.100 4.100 18 C -0.152 4.152 19 C -0.118 4.118 20 C -0.154 4.154 21 C 0.072 3.928 22 F -0.115 7.115 23 C -0.118 4.118 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.188 0.812 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.817 -13.117 -20.187 25.021 hybrid contribution 0.714 0.217 0.592 0.953 sum -6.103 -12.900 -19.595 24.241 Atomic orbital electron populations 1.22311 0.95586 1.02825 1.03261 1.22515 0.94652 0.83271 1.05056 1.47766 1.61081 1.13762 1.10264 1.21741 0.99542 0.96382 0.83692 1.20905 0.94532 0.94836 0.88342 1.42204 1.20642 1.54645 1.20008 1.19209 0.95959 1.22709 0.99045 0.91198 1.24745 0.97819 0.99829 0.98573 1.69661 1.28209 1.33220 1.27148 0.86161 0.81695 0.77638 0.80535 1.21654 1.21737 1.20756 1.18212 0.78456 0.86251 0.83125 1.90839 1.44639 1.19147 1.85234 1.19831 0.97836 0.97373 0.94920 1.22691 0.99539 0.94202 0.98811 1.21028 0.98348 1.00092 0.92370 1.21361 0.95687 0.97284 1.01054 1.17549 0.91296 0.97533 0.86437 1.91524 1.67101 1.92872 1.60030 1.21265 0.99534 0.99701 0.91268 0.91771 0.90900 0.91037 0.87463 0.89951 0.90190 0.89577 0.96401 0.95810 0.78267 0.93487 0.81200 0.84309 0.84410 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.04 37.16 0.34 -1.03 16 2 C 0.07 0.65 5.59 -4.04 -0.02 0.63 16 3 N -0.60 -8.36 2.51 -174.79 -0.44 -8.80 16 4 C 0.11 1.85 5.44 -4.04 -0.02 1.83 16 5 C 0.14 3.04 6.58 -4.04 -0.03 3.01 16 6 N -0.73 -19.20 5.60 -59.90 -0.34 -19.54 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 11 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.55 8.57 7.52 -12.32 -0.09 8.48 16 16 O -0.52 -10.35 16.19 5.32 0.09 -10.27 16 17 C -0.10 -1.16 5.61 -104.98 -0.59 -1.75 16 18 C -0.13 -1.16 7.51 -39.18 -0.29 -1.45 16 19 C -0.10 -0.68 10.03 -39.65 -0.40 -1.08 16 20 C -0.13 -1.06 10.02 -39.43 -0.40 -1.45 16 21 C 0.09 0.95 7.29 -39.47 -0.29 0.66 16 22 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 23 C -0.10 -1.18 9.57 -39.11 -0.37 -1.56 16 24 H 0.06 0.46 7.02 -51.93 -0.36 0.10 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.63 7.43 -51.93 -0.39 0.24 16 27 H 0.11 0.86 4.03 -52.42 -0.21 0.65 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.23 7.32 -51.93 -0.38 0.85 16 30 H 0.09 1.63 7.48 -51.93 -0.39 1.24 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.17 1.18 2.30 -52.48 -0.12 1.06 16 36 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.89 7.82 -52.49 -0.41 1.48 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -34.36 321.09 -7.18 -41.54 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.66 Total: 5.12 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.41 Total: -1.26 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.05 Total: -56.31 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.36 -7.18 -41.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268431961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.054 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds