Wall clock time and date at job start Tue Mar 31 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46827 * 2 1 4 4 C 1.46496 * 119.99904 * 75.05329 * 3 2 1 5 5 C 1.53005 * 109.46775 * 89.99887 * 4 3 2 6 6 N 1.46503 * 109.47046 * 180.02562 * 5 4 3 7 7 C 1.36940 * 120.00177 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00042 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00017 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00023 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47064 * 89.99462 * 11 9 7 13 13 H 1.48497 * 109.47000 * 209.99882 * 11 9 7 14 14 H 1.48506 * 109.46999 * 329.99953 * 11 9 7 15 15 C 1.34778 * 119.99888 * 255.05369 * 3 2 1 16 16 O 1.21552 * 120.00021 * 183.71514 * 15 3 2 17 17 C 1.47853 * 119.99931 * 3.71400 * 15 3 2 18 18 C 1.39594 * 120.13454 * 22.69402 * 17 15 3 19 19 C 1.37944 * 119.90324 * 179.76774 * 18 17 15 20 20 C 1.38338 * 120.17433 * 0.50831 * 19 18 17 21 21 C 1.38549 * 120.27124 * 359.74276 * 20 19 18 22 22 F 1.35099 * 119.95737 * 180.02562 * 21 20 19 23 23 C 1.38216 * 120.08721 * 0.02562 * 21 20 19 24 24 H 1.08991 * 109.47230 * 59.99898 * 1 2 3 25 25 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46867 * 299.99675 * 1 2 3 27 27 H 1.09002 * 109.46867 * 240.00325 * 2 1 3 28 28 H 1.08999 * 109.47408 * 119.99814 * 2 1 3 29 29 H 1.08999 * 109.47493 * 330.00334 * 4 3 2 30 30 H 1.09001 * 109.47434 * 209.99432 * 4 3 2 31 31 H 1.09003 * 109.47244 * 299.99725 * 5 4 3 32 32 H 1.08999 * 109.47234 * 60.00193 * 5 4 3 33 33 H 0.97001 * 119.99643 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00217 * 180.02562 * 10 9 7 35 35 H 1.08005 * 120.04243 * 0.02562 * 18 17 15 36 36 H 1.08004 * 119.91094 * 180.23121 * 19 18 17 37 37 H 1.08002 * 119.86438 * 179.76807 * 20 19 18 38 38 H 1.08001 * 120.08259 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9539 2.1809 1.2258 5 6 3.2455 1.9947 2.0245 6 7 3.1810 2.7939 3.2507 7 6 4.2313 2.7861 4.1293 8 1 5.1071 2.1904 3.9185 9 6 4.1699 3.5429 5.2913 10 7 3.1022 4.2684 5.5485 11 14 5.6024 3.5316 6.4901 12 1 6.5559 4.6123 6.1322 13 1 5.0962 3.7543 7.8683 14 1 6.2939 2.2191 6.4228 15 6 2.5267 1.9163 -1.1277 16 8 2.9936 3.0385 -1.1112 17 6 2.5166 1.1382 -2.3849 18 6 1.6038 0.0961 -2.5568 19 6 1.5953 -0.6236 -3.7336 20 6 2.4959 -0.3222 -4.7395 21 6 3.4084 0.7073 -4.5746 22 9 4.2846 0.9966 -5.5613 23 6 3.4234 1.4386 -3.4019 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.1048 1.8563 1.8273 30 1 1.8350 3.2332 0.9674 31 1 3.3645 0.9425 2.2830 32 1 4.0947 2.3194 1.4231 33 1 2.3944 3.3292 3.4398 34 1 3.0594 4.7976 6.3603 35 1 0.9026 -0.1436 -1.7711 36 1 0.8867 -1.4275 -3.8681 37 1 2.4873 -0.8913 -5.6573 38 1 4.1345 2.2413 -3.2736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268431961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:28 Heat of formation + Delta-G solvation = -30.155808 kcal Electronic energy + Delta-G solvation = -21362.260068 eV Core-core repulsion = 17927.136378 eV Total energy + Delta-G solvation = -3435.123690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98243 -41.78760 -39.28768 -37.77989 -36.53432 -33.88237 -32.36868 -32.19848 -31.11020 -29.34241 -26.13829 -24.96703 -24.16265 -23.68753 -23.06022 -20.78816 -19.30756 -18.86972 -18.13394 -17.58180 -17.15428 -16.84988 -16.72794 -16.52270 -16.15979 -15.46433 -15.27660 -15.17357 -15.01085 -14.71412 -14.47392 -14.19208 -13.77981 -13.38579 -13.11839 -12.92985 -12.85599 -12.77394 -12.49190 -12.40220 -12.21880 -12.14680 -11.89491 -11.83946 -11.05196 -10.98805 -10.23745 -9.82101 -9.74061 -9.09506 -8.00107 -5.31211 -0.34169 0.08010 1.44596 1.47866 1.55851 1.61346 1.79473 2.53633 2.58426 3.10966 3.32856 3.36005 3.73316 3.83511 3.96971 4.02268 4.08962 4.12230 4.16636 4.25556 4.34360 4.49851 4.53479 4.64140 4.86115 4.88285 4.95490 5.01177 5.04057 5.06211 5.15717 5.21087 5.39757 5.41839 5.48380 5.76683 6.21310 6.28235 6.98799 7.27591 7.98309 8.24553 9.23199 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.003461 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.806681 B = 8088.626180 C = 8731.634347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 N -0.592 5.592 4 C 0.123 3.877 5 C 0.148 3.852 6 N -0.742 5.742 7 C -0.254 4.254 8 H 0.072 0.928 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.978 3.022 12 H -0.289 1.289 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.545 3.455 16 O -0.583 6.583 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.082 4.082 20 C -0.119 4.119 21 C 0.076 3.924 22 F -0.146 7.146 23 C -0.121 4.121 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.031 0.969 32 H -0.004 1.004 33 H 0.376 0.624 34 H 0.254 0.746 35 H 0.191 0.809 36 H 0.189 0.811 37 H 0.171 0.829 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -17.118 -21.352 28.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.062 4.062 3 N -0.323 5.323 4 C 0.000 4.000 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.385 4.385 8 H 0.090 0.910 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.806 3.194 12 H -0.216 1.216 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.335 3.665 16 O -0.464 6.464 17 C -0.120 4.120 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.137 4.137 21 C 0.057 3.943 22 F -0.125 7.125 23 C -0.141 4.141 24 H 0.089 0.911 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.014 0.986 33 H 0.208 0.792 34 H 0.063 0.937 35 H 0.208 0.792 36 H 0.206 0.794 37 H 0.188 0.812 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.188 -16.603 -21.294 28.216 hybrid contribution 1.120 1.209 0.834 1.847 sum -7.068 -15.394 -20.460 26.562 Atomic orbital electron populations 1.22306 0.93322 1.04989 1.02944 1.22926 0.96468 0.80506 1.06272 1.47852 1.60591 1.15230 1.08622 1.21363 0.97930 0.95904 0.84798 1.20943 0.95856 0.94385 0.86764 1.42375 1.19861 1.55184 1.21136 1.19585 0.96636 1.22607 0.99687 0.91021 1.25624 1.00621 0.99696 1.00450 1.69813 1.30163 1.34058 1.27652 0.85083 0.78363 0.78048 0.77896 1.21581 1.21468 1.19224 1.18891 0.77247 0.85859 0.84546 1.90795 1.47381 1.21900 1.86315 1.19580 1.00046 0.99123 0.93261 1.22918 0.98270 0.92591 1.00248 1.21566 0.97899 0.99936 0.90489 1.21805 0.93908 0.95561 1.02470 1.17739 0.92291 0.98586 0.85709 1.91498 1.67672 1.93129 1.60176 1.21161 1.00050 1.00166 0.92750 0.91111 0.87398 0.92430 0.85269 0.89807 0.87961 0.92160 0.95075 0.98573 0.79155 0.93703 0.79239 0.79426 0.81182 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.04 71.98 0.65 -1.39 16 2 C 0.06 0.99 5.59 86.38 0.48 1.47 16 3 N -0.59 -16.65 2.51 -825.19 -2.07 -18.72 16 4 C 0.12 4.35 5.44 86.38 0.47 4.82 16 5 C 0.15 6.54 6.58 86.38 0.57 7.11 16 6 N -0.74 -40.18 5.60 -343.44 -1.92 -42.11 16 7 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 11 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.54 17.70 7.52 86.79 0.65 18.35 16 16 O -0.58 -25.21 16.19 -3.88 -0.06 -25.27 16 17 C -0.12 -2.81 5.61 -20.09 -0.11 -2.92 16 18 C -0.12 -1.69 7.51 22.53 0.17 -1.52 16 19 C -0.08 -0.67 10.03 22.22 0.22 -0.45 16 20 C -0.12 -1.39 10.02 22.37 0.22 -1.17 16 21 C 0.08 1.52 7.29 22.34 0.16 1.68 16 22 F -0.15 -3.25 17.26 44.97 0.78 -2.48 16 23 C -0.12 -3.08 9.57 22.58 0.22 -2.86 16 24 H 0.07 0.75 7.02 -2.39 -0.02 0.73 16 25 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.86 7.43 -2.39 -0.02 0.85 16 27 H 0.13 1.63 4.03 -2.84 -0.01 1.61 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 3.13 7.32 -2.39 -0.02 3.11 16 30 H 0.06 2.44 7.48 -2.39 -0.02 2.42 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.38 21.18 7.67 -92.71 -0.71 20.47 16 34 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.19 1.80 2.30 -2.91 -0.01 1.80 16 36 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 37 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.12 3.56 7.82 -2.91 -0.02 3.53 16 Total: -1.00 -79.35 321.09 4.42 -74.92 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.38 Total: 19.20 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.01 Total: 5.26 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.71 Total: -120.97 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.06 Total: -25.27 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.35 4.42 -74.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268431961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.767 kcal (2) G-P(sol) polarization free energy of solvation -79.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds