Wall clock time and date at job start Tue Mar 31 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46822 * 2 1 4 4 C 1.52995 * 109.46955 * 240.00146 * 2 1 3 5 5 N 1.46507 * 109.46964 * 184.99600 * 4 2 1 6 6 C 1.46501 * 120.00139 * 270.00294 * 5 4 2 7 7 C 1.36933 * 119.99443 * 90.00192 * 5 4 2 8 8 H 1.07999 * 120.00619 * 20.29978 * 7 5 4 9 9 C 1.38811 * 119.99649 * 200.29378 * 7 5 4 10 10 N 1.31621 * 120.00357 * 15.02089 * 9 7 5 11 11 Si 1.86808 * 120.00040 * 195.02413 * 9 7 5 12 12 H 1.48502 * 109.46798 * 85.00782 * 11 9 7 13 13 H 1.48504 * 109.47258 * 205.00835 * 11 9 7 14 14 H 1.48502 * 109.46956 * 325.01056 * 11 9 7 15 15 N 1.46500 * 109.47174 * 119.99942 * 2 1 3 16 16 C 1.34774 * 120.00399 * 275.27906 * 15 2 1 17 17 O 1.21556 * 119.99942 * 359.71937 * 16 15 2 18 18 C 1.47845 * 120.00180 * 179.72717 * 16 15 2 19 19 C 1.39597 * 120.13532 * 359.72354 * 18 16 15 20 20 C 1.37941 * 119.90590 * 179.70236 * 19 18 16 21 21 C 1.38340 * 120.17651 * 0.59358 * 20 19 18 22 22 C 1.38547 * 120.26420 * 359.68211 * 21 20 19 23 23 F 1.35104 * 119.95295 * 180.02562 * 22 21 20 24 24 C 1.38216 * 120.09669 * 0.02562 * 22 21 20 25 25 H 1.08996 * 109.47379 * 59.99623 * 1 2 3 26 26 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47026 * 299.99728 * 1 2 3 28 28 H 1.08995 * 109.47705 * 304.99658 * 4 2 1 29 29 H 1.09002 * 109.47273 * 65.00376 * 4 2 1 30 30 H 1.08990 * 109.46842 * 95.10559 * 6 5 4 31 31 H 1.08999 * 109.47088 * 215.10492 * 6 5 4 32 32 H 1.09005 * 109.46963 * 335.10324 * 6 5 4 33 33 H 0.96999 * 120.00455 * 179.97438 * 10 9 7 34 34 H 0.97005 * 119.99497 * 95.00230 * 15 2 1 35 35 H 1.08001 * 120.04240 * 359.97438 * 19 18 16 36 36 H 1.08002 * 119.90782 * 180.29786 * 20 19 18 37 37 H 1.07994 * 119.87083 * 179.69843 * 21 20 19 38 38 H 1.07995 * 120.09006 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2343 -1.7613 7 6 4.0850 -1.9157 -0.6024 8 1 3.5229 -2.8297 -0.4790 9 6 5.4004 -1.8455 -0.1647 10 7 5.9905 -0.6758 -0.0384 11 14 6.3334 -3.4113 0.2448 12 1 6.9258 -3.9732 -0.9955 13 1 7.4150 -3.1037 1.2148 14 1 5.4009 -4.4016 0.8408 15 7 2.0184 -0.6906 1.1962 16 6 2.1418 -0.0197 2.3585 17 8 1.8527 1.1597 2.4132 18 6 2.6289 -0.7182 3.5671 19 6 2.9563 -2.0740 3.5089 20 6 3.4162 -2.7195 4.6379 21 6 3.5421 -2.0299 5.8306 22 6 3.2138 -0.6855 5.8979 23 9 3.3396 -0.0181 7.0657 24 6 2.7576 -0.0263 4.7720 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6055 -1.7197 -1.2952 29 1 1.7517 -0.1582 -2.1370 30 1 4.6151 0.9372 -0.9771 31 1 5.2330 -0.2042 -2.1950 32 1 3.7754 0.7587 -2.5363 33 1 6.9096 -0.6267 0.2678 34 1 2.2491 -1.6318 1.1525 35 1 2.8539 -2.6156 2.5802 36 1 3.6741 -3.7672 4.5918 37 1 3.8980 -2.5413 6.7126 38 1 2.5021 1.0217 4.8245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268719659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:41 Heat of formation + Delta-G solvation = -51.991789 kcal Electronic energy + Delta-G solvation = -22354.385643 eV Core-core repulsion = 18918.315074 eV Total energy + Delta-G solvation = -3436.070569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97865 -41.18481 -39.28342 -37.95453 -35.74744 -33.41916 -32.49453 -31.86554 -30.78037 -28.03062 -27.35114 -25.43554 -23.70184 -23.46536 -22.00570 -21.26145 -19.42734 -18.57795 -17.64591 -17.24707 -17.09293 -16.73581 -16.72439 -16.59989 -15.90924 -15.50218 -15.14266 -14.86269 -14.82040 -14.50393 -14.21089 -13.84245 -13.50257 -13.14633 -13.08655 -12.94946 -12.84389 -12.69311 -12.47983 -12.38876 -12.14418 -11.93113 -11.92187 -11.65273 -10.95254 -10.56314 -10.22820 -9.91620 -9.74654 -8.76718 -7.73935 -5.19883 -0.29606 0.11280 1.49551 1.54472 1.60939 1.81890 2.28319 2.56806 2.74888 3.18980 3.41617 3.64295 3.74117 3.76795 4.02257 4.04864 4.18000 4.27271 4.44446 4.53939 4.68444 4.77708 4.84951 4.91492 4.92913 5.00598 5.02707 5.15982 5.21952 5.25065 5.34061 5.40958 5.68039 5.71246 5.75339 5.78475 6.36404 6.69909 7.19199 7.32688 7.92898 8.39298 9.29759 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013664 B = 0.007300 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.750891 B = 3834.583522 C = 5171.085709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.118 3.882 3 H 0.039 0.961 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.248 4.248 8 H 0.086 0.914 9 C -0.048 4.048 10 N -0.936 5.936 11 Si 0.950 3.050 12 H -0.297 1.297 13 H -0.308 1.308 14 H -0.247 1.247 15 N -0.675 5.675 16 C 0.550 3.450 17 O -0.596 6.596 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.090 4.090 21 C -0.120 4.120 22 C 0.077 3.923 23 F -0.142 7.142 24 C -0.117 4.117 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.075 0.925 30 H -0.009 1.009 31 H 0.017 0.983 32 H 0.028 0.972 33 H 0.241 0.759 34 H 0.408 0.592 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 -6.813 6.540 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.058 0.942 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.032 3.968 7 C -0.378 4.378 8 H 0.104 0.896 9 C -0.243 4.243 10 N -0.583 5.583 11 Si 0.779 3.221 12 H -0.225 1.225 13 H -0.236 1.236 14 H -0.170 1.170 15 N -0.323 5.323 16 C 0.337 3.663 17 O -0.479 6.479 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.139 4.139 22 C 0.058 3.942 23 F -0.121 7.121 24 C -0.137 4.137 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.009 0.991 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.246 0.754 35 H 0.162 0.838 36 H 0.194 0.806 37 H 0.190 0.810 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.875 -5.959 6.587 12.556 hybrid contribution 1.283 -0.128 0.391 1.347 sum -7.592 -6.087 6.978 11.974 Atomic orbital electron populations 1.22033 0.93523 1.02899 1.02087 1.21823 0.94311 0.96278 0.86530 0.94222 1.21407 0.83213 0.99613 0.94300 1.44164 1.00853 1.22089 1.66296 1.20489 0.92767 0.90035 0.93481 1.19470 0.95829 0.90692 1.31807 0.89626 1.25634 0.99734 0.98261 1.00665 1.70293 1.12290 1.23941 1.51726 0.85527 0.78895 0.80760 0.76880 1.22452 1.23582 1.17039 1.45661 1.63981 1.14497 1.08199 1.18475 0.77322 0.86091 0.84379 1.90666 1.53717 1.17249 1.86267 1.19816 1.03725 0.95308 0.93087 1.21681 0.96213 0.92558 1.00469 1.21402 0.96818 1.02127 0.90440 1.21685 0.99554 0.91532 1.01104 1.17639 1.03569 0.91793 0.81178 1.91488 1.93965 1.80912 1.45714 1.21160 1.00017 1.01040 0.91500 0.89858 0.90705 0.94378 0.90882 0.90678 0.99113 0.96379 0.95319 0.95015 0.75397 0.83849 0.80640 0.80963 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 2 C 0.12 4.23 2.88 44.99 0.13 4.36 16 3 H 0.04 1.73 7.58 -2.38 -0.02 1.72 16 4 C 0.14 4.93 5.36 86.38 0.46 5.39 16 5 N -0.61 -27.71 2.82 -726.94 -2.05 -29.76 16 6 C 0.18 8.63 9.02 127.77 1.15 9.78 16 7 C -0.25 -11.77 8.02 84.03 0.67 -11.10 16 8 H 0.09 3.70 7.86 -2.91 -0.02 3.67 16 9 C -0.05 -2.45 5.06 84.86 0.43 -2.02 16 10 N -0.94 -53.72 10.67 21.65 0.23 -53.49 16 11 Si 0.95 41.08 29.58 68.60 2.03 43.11 16 12 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.31 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 15 N -0.67 -25.33 4.44 -445.40 -1.98 -27.31 16 16 C 0.55 22.76 7.74 86.79 0.67 23.43 16 17 O -0.60 -28.62 16.01 -3.89 -0.06 -28.68 16 18 C -0.12 -4.13 5.87 -20.09 -0.12 -4.25 16 19 C -0.09 -2.61 9.54 22.53 0.21 -2.39 16 20 C -0.09 -2.01 10.03 22.22 0.22 -1.79 16 21 C -0.12 -2.68 10.02 22.37 0.22 -2.45 16 22 C 0.08 2.21 7.29 22.34 0.16 2.38 16 23 F -0.14 -4.05 17.26 44.97 0.78 -3.27 16 24 C -0.12 -4.00 9.57 22.58 0.22 -3.78 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 29 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 30 H -0.01 -0.53 7.40 -2.39 -0.02 -0.55 16 31 H 0.02 0.93 7.21 -2.39 -0.02 0.91 16 32 H 0.03 1.18 7.84 -2.38 -0.02 1.16 16 33 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.41 14.26 5.43 -92.70 -0.50 13.75 16 35 H 0.14 3.88 6.40 -2.91 -0.02 3.86 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.13 4.66 7.65 -2.91 -0.02 4.64 16 Total: -1.00 -67.65 324.10 4.64 -63.01 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.57 Total: 22.19 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 5.13 Total: 14.20 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -3.80 Total: -110.57 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.06 Total: -28.68 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -67.65 4.64 -63.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268719659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.019 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds