Wall clock time and date at job start Tue Mar 31 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47248 * 2 1 4 4 C 1.53007 * 109.47010 * 240.00599 * 2 1 3 5 5 N 1.46503 * 109.46771 * 185.00154 * 4 2 1 6 6 C 1.46497 * 119.99512 * 269.99566 * 5 4 2 7 7 C 1.36932 * 120.00078 * 90.00211 * 5 4 2 8 8 H 1.07995 * 120.00386 * 22.32608 * 7 5 4 9 9 C 1.38810 * 119.99675 * 202.32875 * 7 5 4 10 10 N 1.31624 * 120.00219 * 11.37272 * 9 7 5 11 11 Si 1.86803 * 120.00030 * 191.36963 * 9 7 5 12 12 H 1.48494 * 109.46952 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46908 * 119.99856 * 11 9 7 14 14 H 1.48496 * 109.47370 * 240.00048 * 11 9 7 15 15 N 1.46497 * 109.47138 * 120.00590 * 2 1 3 16 16 C 1.34775 * 119.99535 * 274.99353 * 15 2 1 17 17 O 1.21573 * 120.00637 * 0.02562 * 16 15 2 18 18 C 1.47694 * 119.99720 * 179.97438 * 16 15 2 19 19 C 1.39657 * 120.16967 * 0.02562 * 18 16 15 20 20 C 1.37851 * 119.88174 * 179.97438 * 19 18 16 21 21 C 1.38460 * 120.22027 * 0.02628 * 20 19 18 22 22 C 1.38204 * 120.33637 * 359.96897 * 21 20 19 23 23 C 1.38321 * 120.11619 * 359.75194 * 22 21 20 24 24 F 1.35107 * 120.11047 * 180.27399 * 23 22 21 25 25 H 1.09001 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47098 * 299.99523 * 1 2 3 27 27 H 1.08998 * 109.46906 * 60.00016 * 1 2 3 28 28 H 1.08998 * 109.46648 * 304.99419 * 4 2 1 29 29 H 1.08996 * 109.47143 * 64.99761 * 4 2 1 30 30 H 1.09002 * 109.47585 * 94.23180 * 6 5 4 31 31 H 1.09005 * 109.46999 * 214.22927 * 6 5 4 32 32 H 1.08998 * 109.47608 * 334.22937 * 6 5 4 33 33 H 0.97001 * 120.00190 * 180.02562 * 10 9 7 34 34 H 0.96992 * 120.00276 * 95.00302 * 15 2 1 35 35 H 1.08003 * 120.06016 * 359.97438 * 19 18 16 36 36 H 1.08004 * 119.88878 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.83446 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.93948 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0850 -1.9158 -0.6025 8 1 3.5339 -2.8398 -0.5088 9 6 5.3863 -1.8326 -0.1267 10 7 5.9795 -0.6612 -0.0339 11 14 6.2958 -3.3829 0.3821 12 1 5.4149 -4.5616 0.1823 13 1 7.5190 -3.5336 -0.4464 14 1 6.6766 -3.2861 1.8141 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3570 17 8 1.8577 1.1611 2.4119 18 6 2.6389 -0.7148 3.5630 19 6 2.9720 -2.0698 3.5043 20 6 3.4309 -2.7139 4.6334 21 6 3.5622 -2.0220 5.8255 22 6 3.2353 -0.6809 5.8939 23 6 2.7790 -0.0195 4.7680 24 9 2.4647 1.2929 4.8336 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 -1.2953 29 1 1.7516 -0.1582 -2.1370 30 1 4.6023 0.9457 -0.9802 31 1 5.2404 -0.2026 -2.1813 32 1 3.7810 0.7486 -2.5470 33 1 6.8890 -0.6031 0.2982 34 1 2.2491 -1.6318 1.1525 35 1 2.8702 -2.6122 2.5758 36 1 3.6881 -3.7619 4.5882 37 1 3.9220 -2.5328 6.7064 38 1 3.3406 -0.1473 6.8270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268720182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:54 Heat of formation + Delta-G solvation = -32.025234 kcal Electronic energy + Delta-G solvation = -22685.001958 eV Core-core repulsion = 19249.797204 eV Total energy + Delta-G solvation = -3435.204755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -48.53490 -39.57851 -38.03659 -36.23267 -33.97669 -31.98098 -30.88210 -30.31143 -29.56517 -26.17966 -25.62507 -23.98559 -22.57130 -21.71571 -20.46686 -19.67704 -17.85253 -16.93972 -16.54075 -16.15798 -15.40111 -15.17330 -15.04006 -14.77960 -14.25145 -14.08462 -13.70477 -13.28361 -13.05196 -12.88367 -12.83224 -12.23559 -12.10447 -11.88819 -11.79164 -11.40580 -11.29916 -11.18175 -10.89737 -10.72970 -10.40161 -10.25082 -10.05664 -9.86444 -9.26042 -8.99558 -8.61243 -8.59683 -8.23324 -6.80383 -5.77026 -3.23546 0.95531 1.30859 3.24987 3.28891 3.36031 3.39391 3.77175 4.10030 4.40386 4.42047 4.79573 4.94084 5.10473 5.32323 5.35016 5.38940 5.50372 5.65707 5.84159 5.88807 5.99075 6.10298 6.15748 6.18685 6.25401 6.29385 6.42476 6.46483 6.54421 6.74891 6.88787 6.93490 7.27411 7.37441 7.67253 7.78922 8.26537 8.33528 8.91500 9.17128 9.81485 10.31997 11.27013 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.008352 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.119581 B = 3351.880584 C = 4675.488424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.260 4.260 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.288 1.288 15 N -0.680 5.680 16 C 0.558 3.442 17 O -0.547 6.547 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.142 4.142 21 C -0.074 4.074 22 C -0.171 4.171 23 C 0.152 3.848 24 F -0.118 7.118 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.004 1.004 33 H 0.252 0.748 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -4.186 7.389 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.390 4.390 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.215 1.215 15 N -0.329 5.329 16 C 0.344 3.656 17 O -0.426 6.426 18 C -0.161 4.161 19 C -0.067 4.067 20 C -0.160 4.160 21 C -0.092 4.092 22 C -0.190 4.190 23 C 0.132 3.868 24 F -0.096 7.096 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.239 0.761 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.261 -3.255 7.402 10.868 hybrid contribution 0.920 -0.972 0.382 1.392 sum -6.341 -4.228 7.784 10.894 Atomic orbital electron populations 1.22159 0.96802 1.01265 1.01632 1.21863 0.91845 0.98491 0.86768 0.90421 1.21199 0.85990 0.97885 0.93588 1.43886 0.98879 1.22634 1.66645 1.20798 0.92955 0.90468 0.93868 1.19098 0.97218 0.89419 1.33217 0.91585 1.25001 0.98633 0.96072 0.99355 1.70079 1.13285 1.21526 1.49094 0.86388 0.80304 0.82994 0.78165 1.20199 1.21608 1.21506 1.45597 1.64749 1.14240 1.08341 1.17856 0.78155 0.86402 0.83216 1.90756 1.51338 1.15222 1.85324 1.20242 1.06667 0.95198 0.94011 1.21347 0.93793 0.92516 0.99045 1.21144 1.01403 1.00816 0.92642 1.21111 0.96674 0.93221 0.98200 1.21075 1.04291 0.95868 0.97799 1.17738 0.97079 0.78534 0.93461 1.91571 1.89656 1.31659 1.96759 0.93002 0.92905 0.92178 0.93325 0.92854 0.95390 0.93707 0.98540 0.93752 0.76082 0.84302 0.84977 0.84965 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 37.16 0.35 -2.11 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 5 N -0.60 -14.11 2.82 -181.12 -0.51 -14.62 16 6 C 0.16 4.00 9.01 59.85 0.54 4.54 16 7 C -0.26 -6.47 8.02 -15.06 -0.12 -6.59 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.90 -25.32 10.59 55.49 0.59 -24.73 16 11 Si 0.89 20.42 29.57 -169.99 -5.03 15.39 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 N -0.68 -13.42 4.44 -54.79 -0.24 -13.66 16 16 C 0.56 11.90 7.73 -12.40 -0.10 11.80 16 17 O -0.55 -13.30 15.00 5.30 0.08 -13.22 16 18 C -0.16 -2.93 5.88 -104.91 -0.62 -3.55 16 19 C -0.05 -0.77 9.54 -39.19 -0.37 -1.14 16 20 C -0.14 -1.86 10.03 -39.64 -0.40 -2.26 16 21 C -0.07 -0.88 10.04 -39.51 -0.40 -1.28 16 22 C -0.17 -2.34 10.01 -39.56 -0.40 -2.74 16 23 C 0.15 2.69 7.29 -38.96 -0.28 2.41 16 24 F -0.12 -2.33 15.55 2.25 0.04 -2.29 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 29 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.03 0.76 7.42 -51.93 -0.39 0.38 16 31 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 32 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.40 7.57 5.43 -40.82 -0.22 7.35 16 35 H 0.14 2.11 6.41 -52.48 -0.34 1.77 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -31.51 322.20 -7.34 -38.85 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.03 Total: 5.44 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.10 Total: 3.98 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.17 Total: -53.01 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.51 -7.34 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268720182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.827 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds