Wall clock time and date at job start Tue Mar 31 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 H 1.08999 * 109.46908 * 55.00331 * 3 2 1 5 5 C 1.52996 * 109.47100 * 175.00069 * 3 2 1 6 6 N 1.46499 * 109.47351 * 175.00498 * 5 3 2 7 7 C 1.34772 * 120.00369 * 180.02562 * 6 5 3 8 8 O 1.21572 * 120.00081 * 359.97438 * 7 6 5 9 9 C 1.47696 * 120.00302 * 179.97438 * 7 6 5 10 10 C 1.39656 * 120.16419 * 359.97438 * 9 7 6 11 11 C 1.37856 * 119.88078 * 180.02562 * 10 9 7 12 12 C 1.38465 * 120.21422 * 0.02562 * 11 10 9 13 13 C 1.38207 * 120.34023 * 359.97438 * 12 11 10 14 14 C 1.38319 * 120.11424 * 0.02562 * 13 12 11 15 15 F 1.35101 * 120.10795 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47430 * 295.00351 * 3 2 1 17 17 C 1.36935 * 120.00087 * 84.99552 * 16 3 2 18 18 H 1.07996 * 120.00132 * 0.02562 * 17 16 3 19 19 C 1.38815 * 119.99865 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47574 * 119.99832 * 21 19 17 24 24 H 1.48500 * 109.46860 * 239.99281 * 21 19 17 25 25 H 1.08998 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46809 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.46777 * 59.99260 * 1 2 3 28 28 H 1.08998 * 109.46784 * 240.00392 * 2 1 3 29 29 H 1.08995 * 109.46788 * 120.00303 * 2 1 3 30 30 H 1.08993 * 109.47243 * 55.00214 * 5 3 2 31 31 H 1.09001 * 109.46921 * 295.00390 * 5 3 2 32 32 H 0.97009 * 119.99695 * 359.97438 * 6 5 3 33 33 H 1.08006 * 120.06057 * 0.04413 * 10 9 7 34 34 H 1.07995 * 119.89426 * 180.27593 * 11 10 9 35 35 H 1.08000 * 119.82778 * 179.97438 * 12 11 10 36 36 H 1.07994 * 119.93912 * 180.02562 * 13 12 11 37 37 H 0.96997 * 119.99327 * 265.00194 * 16 3 2 38 38 H 0.96997 * 119.99414 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 4.0632 2.8167 0.0061 7 6 5.3858 3.0629 0.0859 8 8 6.1655 2.1460 0.2577 9 6 5.8882 4.4464 -0.0353 10 6 4.9958 5.5023 -0.2332 11 6 5.4711 6.7913 -0.3461 12 6 6.8304 7.0425 -0.2643 13 6 7.7215 6.0044 -0.0686 14 6 7.2597 4.7057 0.0465 15 9 8.1310 3.6911 0.2384 16 7 1.6525 2.0976 -1.2518 17 6 0.4157 2.6735 -1.3687 18 1 -0.2739 2.6453 -0.5381 19 6 0.0483 3.2938 -2.5550 20 7 0.8890 3.3287 -3.5672 21 14 -1.6386 4.0801 -2.7143 22 1 -2.3879 3.9059 -1.4441 23 1 -1.4844 5.5285 -3.0038 24 1 -2.3848 3.4307 -3.8218 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9954 0.8311 -0.6659 31 1 3.8499 1.0376 1.0960 32 1 3.4411 3.5483 -0.1314 33 1 3.9350 5.3092 -0.2975 34 1 4.7808 7.6085 -0.4947 35 1 7.1960 8.0547 -0.3540 36 1 8.7803 6.2077 -0.0054 37 1 2.2720 2.1232 -1.9977 38 1 0.6323 3.7624 -4.3959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269366444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:36 Heat of formation + Delta-G solvation = -71.105651 kcal Electronic energy + Delta-G solvation = -21663.788297 eV Core-core repulsion = 18226.888888 eV Total energy + Delta-G solvation = -3436.899409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92363 -41.10540 -39.34306 -38.23201 -35.34709 -34.19788 -32.49578 -31.47691 -31.46313 -29.37191 -25.91990 -24.99804 -23.99906 -23.24362 -21.73880 -21.29368 -19.49815 -18.94195 -18.05790 -17.57716 -17.05058 -16.75535 -16.51070 -16.17351 -16.00381 -15.60047 -15.44156 -15.13039 -14.63171 -14.45194 -14.16960 -14.12807 -13.80566 -13.24803 -13.01891 -12.97147 -12.80448 -12.77125 -12.35686 -12.31714 -12.06787 -11.86710 -11.64042 -11.33377 -11.07467 -10.86825 -10.30368 -10.01496 -9.76138 -8.97600 -7.86179 -5.13979 -0.32541 0.16249 1.50613 1.53743 1.61074 1.76619 2.13478 2.60944 2.68813 3.17698 3.47059 3.59261 3.71262 3.88759 3.94608 3.99564 4.27595 4.29015 4.36180 4.47282 4.55067 4.66396 4.78111 4.86560 4.99843 5.01791 5.08089 5.12167 5.20692 5.21843 5.36062 5.42300 5.55430 5.63080 5.72455 5.81429 6.33431 6.47978 7.11494 7.41454 8.11766 8.37736 9.36794 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.005037 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.647495 B = 5557.977682 C = 6917.671781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.701 5.701 7 C 0.547 3.453 8 O -0.580 6.580 9 C -0.196 4.196 10 C -0.060 4.060 11 C -0.132 4.132 12 C -0.050 4.050 13 C -0.161 4.161 14 C 0.124 3.876 15 F -0.139 7.139 16 N -0.728 5.728 17 C -0.215 4.215 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.296 1.296 24 H -0.304 1.304 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.372 0.628 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 7.615 9.293 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.352 5.352 7 C 0.335 3.665 8 O -0.462 6.462 9 C -0.200 4.200 10 C -0.079 4.079 11 C -0.150 4.150 12 C -0.068 4.068 13 C -0.180 4.180 14 C 0.103 3.897 15 F -0.118 7.118 16 N -0.368 5.368 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.224 1.224 24 H -0.233 1.233 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.204 0.796 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.131 6.960 9.502 14.903 hybrid contribution -0.890 0.035 -0.916 1.277 sum 8.241 6.994 8.586 13.804 Atomic orbital electron populations 1.21693 0.95742 1.00631 1.01880 1.21991 0.96803 0.97250 1.01022 1.20709 0.90407 0.93473 0.89714 0.91994 1.21632 0.94763 0.82417 1.01514 1.45842 1.06615 1.10992 1.71772 1.18496 0.82675 0.88743 0.76587 1.90758 1.56764 1.46967 1.51696 1.20096 0.93769 0.94110 1.11982 1.21492 0.99555 0.92450 0.94422 1.21609 0.97106 0.96414 0.99881 1.21729 0.92068 1.00449 0.92567 1.21500 1.03265 0.89329 1.03896 1.18187 0.85715 0.85984 0.99782 1.91519 1.68395 1.59858 1.91982 1.42595 1.15898 1.66109 1.12244 1.19540 0.92379 1.25257 0.97546 0.90054 1.25368 1.00905 1.03488 0.96592 1.69824 1.36749 1.50974 1.04333 0.85275 0.80882 0.77487 0.77334 1.19051 1.22372 1.23253 0.92871 0.93069 0.93189 0.93691 0.90710 0.93160 0.90154 0.75044 0.84387 0.81707 0.80187 0.81595 0.79638 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.18 71.98 0.66 -4.07 16 2 C -0.13 -4.25 5.61 30.60 0.17 -4.08 16 3 C 0.17 5.90 2.59 44.99 0.12 6.02 16 4 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 5 C 0.12 4.17 5.23 86.38 0.45 4.62 16 6 N -0.70 -24.38 5.34 -466.14 -2.49 -26.87 16 7 C 0.55 20.39 7.77 86.74 0.67 21.06 16 8 O -0.58 -25.47 15.34 -3.94 -0.06 -25.53 16 9 C -0.20 -6.09 5.88 -20.05 -0.12 -6.21 16 10 C -0.06 -1.51 9.54 22.52 0.21 -1.29 16 11 C -0.13 -2.33 10.03 22.23 0.22 -2.11 16 12 C -0.05 -0.73 10.04 22.32 0.22 -0.50 16 13 C -0.16 -3.11 10.01 22.28 0.22 -2.89 16 14 C 0.12 3.60 7.29 22.67 0.17 3.76 16 15 F -0.14 -4.81 15.55 44.97 0.70 -4.11 16 16 N -0.73 -32.56 4.51 -322.95 -1.46 -34.02 16 17 C -0.22 -10.56 7.75 84.03 0.65 -9.91 16 18 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.97 -55.73 13.06 21.65 0.28 -55.45 16 21 Si 0.96 43.35 29.55 68.60 2.03 45.38 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.41 13.89 6.17 -92.70 -0.57 13.32 16 33 H 0.14 3.45 6.41 -2.91 -0.02 3.44 16 34 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.37 18.72 7.80 -92.71 -0.72 18.00 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -67.09 324.19 2.92 -64.16 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.21 Total: 35.33 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.13 Total: 1.10 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.66 Total: -116.33 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.70 Total: -4.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.09 2.92 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269366444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.943 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds