Wall clock time and date at job start Tue Mar 31 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46706 * 2 1 4 4 C 1.46490 * 119.99881 * 264.48550 * 3 2 1 5 5 C 1.50698 * 109.47496 * 270.00512 * 4 3 2 6 6 H 1.07992 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99829 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00527 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46949 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47229 * 119.99457 * 9 7 5 12 12 H 1.48494 * 109.47311 * 240.00021 * 9 7 5 13 13 C 1.34775 * 119.99939 * 84.49393 * 3 2 1 14 14 O 1.21600 * 120.00023 * 185.91483 * 13 3 2 15 15 C 1.47437 * 120.00106 * 5.91381 * 13 3 2 16 16 C 1.39765 * 120.19648 * 54.34905 * 15 13 3 17 17 C 1.37929 * 119.90001 * 180.02562 * 16 15 13 18 18 F 1.35098 * 119.84987 * 180.02562 * 17 16 15 19 19 C 1.38792 * 120.30206 * 359.97438 * 17 16 15 20 20 C 1.37957 * 120.39520 * 0.02562 * 19 17 16 21 21 C 1.50702 * 119.95125 * 180.02562 * 20 19 17 22 22 C 1.38933 * 120.09953 * 359.97438 * 20 19 17 23 23 N 1.38988 * 120.15316 * 180.02562 * 22 20 19 24 24 H 1.09007 * 109.47389 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47469 * 299.99805 * 1 2 3 26 26 H 1.09000 * 109.47347 * 60.00164 * 1 2 3 27 27 H 1.08994 * 109.46981 * 240.00286 * 2 1 3 28 28 H 1.08995 * 109.46883 * 119.99787 * 2 1 3 29 29 H 1.09003 * 109.47138 * 30.01131 * 4 3 2 30 30 H 1.09010 * 109.47204 * 150.00007 * 4 3 2 31 31 H 0.96995 * 120.00512 * 179.97438 * 8 7 5 32 32 H 1.07996 * 120.04797 * 359.97438 * 16 15 13 33 33 H 1.08000 * 119.79697 * 180.28163 * 19 17 16 34 34 H 1.09002 * 109.47205 * 89.99612 * 21 20 19 35 35 H 1.08997 * 109.47264 * 209.99997 * 21 20 19 36 36 H 1.08999 * 109.47018 * 329.99997 * 21 20 19 37 37 H 0.97004 * 120.00033 * 355.25383 * 23 22 20 38 38 H 0.97003 * 120.00310 * 175.25778 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3773 2.0312 -1.2628 5 6 3.8337 1.7827 -1.5594 6 1 4.4322 1.1994 -0.8755 7 6 4.4024 2.3010 -2.7035 8 7 3.6738 3.0119 -3.5362 9 14 6.2076 1.9924 -3.0716 10 1 6.8005 1.1699 -1.9866 11 1 6.3332 1.2723 -4.3642 12 1 6.9245 3.2901 -3.1562 13 6 2.1372 2.0540 1.1618 14 8 2.4388 3.2320 1.1542 15 6 1.9018 1.3615 2.4420 16 6 2.6029 0.1918 2.7479 17 6 2.3774 -0.4513 3.9471 18 9 3.0561 -1.5816 4.2419 19 6 1.4573 0.0582 4.8527 20 6 0.7584 1.2119 4.5634 21 6 -0.2379 1.7565 5.5543 22 6 0.9725 1.8731 3.3604 23 7 0.2694 3.0358 3.0680 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7674 1.6221 -2.0683 30 1 2.2007 3.1039 -1.1825 31 1 4.0740 3.3768 -4.3409 32 1 3.3195 -0.2084 2.0460 33 1 1.2905 -0.4495 5.7913 34 1 0.2640 2.4473 6.2319 35 1 -1.0304 2.2818 5.0213 36 1 -0.6678 0.9344 6.1265 37 1 -0.4213 3.3498 3.6724 38 1 0.4694 3.5333 2.2596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001291919512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:02 Heat of formation + Delta-G solvation = -60.495888 kcal Electronic energy + Delta-G solvation = -22270.799594 eV Core-core repulsion = 18834.360259 eV Total energy + Delta-G solvation = -3436.439335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.60169 -40.18135 -38.16258 -35.45011 -34.26306 -33.04390 -32.39140 -30.10355 -28.97429 -27.02196 -26.92006 -24.10808 -23.02991 -21.99305 -21.39368 -18.80024 -17.62065 -17.08264 -16.79123 -16.41168 -15.95352 -15.52648 -15.29409 -15.01459 -14.34948 -14.08233 -13.82577 -13.74311 -13.29668 -13.14037 -13.07412 -12.66404 -12.30734 -12.12490 -12.06517 -11.92747 -11.67744 -11.23727 -11.21029 -10.91127 -10.75813 -10.58394 -10.27255 -10.13729 -9.64186 -9.11328 -8.75970 -8.45305 -7.70307 -7.37717 -6.06586 -4.11571 1.06919 1.43915 3.20637 3.29292 3.37125 3.41735 3.71494 3.87015 3.94141 4.40650 4.45330 4.73327 4.78257 5.07159 5.21190 5.26361 5.30633 5.42718 5.43635 5.54436 5.66204 5.69822 5.84491 5.99353 6.07488 6.14187 6.22504 6.24958 6.27484 6.50898 6.84789 7.03568 7.39936 7.43261 7.52581 7.77610 7.89934 8.20245 8.36335 8.84609 9.01349 9.53935 11.01396 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.005140 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.581099 B = 5445.900797 C = 5883.810058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.586 5.586 4 C 0.244 3.756 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.558 3.442 14 O -0.541 6.541 15 C -0.166 4.166 16 C -0.077 4.077 17 C 0.031 3.969 18 F -0.146 7.146 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.102 4.102 22 C 0.254 3.746 23 N -0.860 5.860 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -6.131 15.230 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.316 5.316 4 C 0.125 3.875 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.344 3.656 14 O -0.420 6.420 15 C -0.175 4.175 16 C -0.096 4.096 17 C 0.010 3.990 18 F -0.125 7.125 19 C -0.112 4.112 20 C -0.155 4.155 21 C -0.159 4.159 22 C 0.145 3.855 23 N -0.400 5.400 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.481 -5.448 14.993 18.557 hybrid contribution 1.035 -0.147 -0.402 1.120 sum -8.447 -5.595 14.591 17.764 Atomic orbital electron populations 1.22169 0.96729 1.01431 1.02014 1.21629 0.93655 0.84154 1.03148 1.48208 1.62131 1.13230 1.08036 1.19340 0.95516 0.94427 0.78181 1.21474 0.95170 1.33508 1.06500 0.92354 1.24926 0.98254 0.94858 0.95965 1.69936 1.36077 1.34913 1.12378 0.86446 0.84854 0.78088 0.78083 1.19737 1.20927 1.20865 1.17867 0.78027 0.86441 0.83243 1.90755 1.48530 1.15568 1.87153 1.19421 1.02739 0.98281 0.97011 1.21010 0.99294 0.93611 0.95727 1.17154 0.98537 0.87087 0.96234 1.91460 1.78832 1.48623 1.93621 1.20760 0.95548 0.95938 0.98962 1.19058 1.03443 0.97758 0.95256 1.20580 0.96776 1.01221 0.97300 1.17409 0.90021 0.86775 0.91329 1.42613 1.41637 1.26145 1.29586 0.92174 0.93133 0.92288 0.89795 0.91025 0.94838 0.93685 0.92749 0.84137 0.84924 0.91259 0.91977 0.91245 0.77358 0.75765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.20 37.16 0.38 -1.98 16 2 C 0.10 1.65 5.89 -4.04 -0.02 1.63 16 3 N -0.59 -12.40 2.47 -176.33 -0.44 -12.84 16 4 C 0.24 6.31 5.18 -5.20 -0.03 6.29 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.56 11.73 6.44 -12.52 -0.08 11.65 16 14 O -0.54 -13.32 15.35 5.28 0.08 -13.24 16 15 C -0.17 -2.82 4.87 -104.80 -0.51 -3.33 16 16 C -0.08 -1.20 7.57 -39.12 -0.30 -1.50 16 17 C 0.03 0.43 7.28 -39.49 -0.29 0.15 16 18 F -0.15 -2.09 17.26 2.25 0.04 -2.05 16 19 C -0.09 -1.10 9.65 -39.48 -0.38 -1.48 16 20 C -0.15 -1.76 5.89 -104.47 -0.62 -2.38 16 21 C -0.10 -0.82 9.60 36.01 0.35 -0.48 16 22 C 0.25 3.63 6.73 -83.58 -0.56 3.07 16 23 N -0.86 -10.97 8.87 32.56 0.29 -10.68 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.07 1.10 4.49 -51.93 -0.23 0.86 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 1.30 7.35 -51.92 -0.38 0.92 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.14 2.24 7.33 -52.49 -0.38 1.85 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 6.48 -51.93 -0.34 0.10 16 36 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.40 3.69 6.78 -40.82 -0.28 3.41 16 38 H 0.41 6.15 6.82 -40.82 -0.28 5.87 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -32.18 322.32 -6.73 -38.91 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.80 Total: 5.72 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.48 Total: -1.88 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.59 Total: -49.15 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.18 -6.73 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001291919512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.586 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds