Wall clock time and date at job start Tue Mar 31 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47341 * 2 1 4 4 C 1.50696 * 109.47372 * 239.99344 * 2 1 3 5 5 H 1.07998 * 120.00202 * 239.99965 * 4 2 1 6 6 C 1.37874 * 119.99699 * 60.00288 * 4 2 1 7 7 N 1.31515 * 120.00589 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99775 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47030 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46835 * 120.00138 * 8 6 4 11 11 H 1.48501 * 109.47248 * 240.00019 * 8 6 4 12 12 N 1.46903 * 109.46848 * 119.99461 * 2 1 3 13 13 C 1.46903 * 111.00080 * 275.00383 * 12 2 1 14 14 C 1.50693 * 109.47023 * 179.97438 * 13 12 2 15 15 N 1.28675 * 124.92996 * 90.00090 * 14 13 12 16 16 C 1.32521 * 117.87673 * 179.97438 * 15 14 13 17 17 C 1.34609 * 113.16070 * 0.02562 * 16 15 14 18 18 S 1.70917 * 124.92929 * 269.99399 * 14 13 12 19 19 C 1.51002 * 125.22764 * 179.97438 * 17 16 15 20 20 C 1.53279 * 108.58010 * 343.93286 * 19 17 16 21 21 H 1.09001 * 109.55015 * 289.42490 * 20 19 17 22 22 C 1.52999 * 109.54731 * 169.23045 * 20 19 17 23 23 C 1.53145 * 108.99147 * 49.27844 * 20 19 17 24 24 C 1.52136 * 124.20151 * 180.02562 * 16 15 14 25 25 H 1.09002 * 109.46896 * 60.00402 * 1 2 3 26 26 H 1.08996 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47517 * 300.01036 * 1 2 3 28 28 H 0.96994 * 120.00506 * 179.97438 * 7 6 4 29 29 H 1.00897 * 111.00323 * 151.05080 * 12 2 1 30 30 H 1.08997 * 109.47323 * 59.99876 * 13 12 2 31 31 H 1.09002 * 109.46805 * 300.00018 * 13 12 2 32 32 H 1.08998 * 109.61958 * 103.66826 * 19 17 16 33 33 H 1.09004 * 109.61689 * 224.20694 * 19 17 16 34 34 H 1.08997 * 109.47509 * 60.00435 * 22 20 19 35 35 H 1.08998 * 109.46666 * 180.02562 * 22 20 19 36 36 H 1.08998 * 109.47349 * 299.99837 * 22 20 19 37 37 H 1.09001 * 109.47443 * 49.60638 * 23 20 19 38 38 H 1.08999 * 109.47531 * 169.61708 * 23 20 19 39 39 H 1.09004 * 109.58967 * 42.70040 * 24 16 15 40 40 H 1.08992 * 109.59256 * 282.24823 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6035 8 14 2.3227 -1.1199 -4.0078 9 1 3.1475 -2.2866 -3.6034 10 1 1.1680 -1.5870 -4.8163 11 1 3.1475 -0.1862 -4.8159 12 7 2.0196 -0.6924 1.1995 13 6 2.0823 0.2228 2.3470 14 6 2.5871 -0.5215 3.5561 15 7 3.8249 -0.6310 3.8902 16 6 4.1125 -1.3194 4.9854 17 6 3.0228 -1.8159 5.6002 18 16 1.5985 -1.3428 4.6829 19 6 3.0360 -2.6399 6.8655 20 6 4.4621 -3.1500 7.1012 21 1 4.7060 -3.9082 6.3571 22 6 4.5640 -3.7561 8.5023 23 6 5.4382 -1.9765 6.9760 24 6 5.5229 -1.5385 5.5120 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8898 28 1 0.7097 1.1616 -3.4845 29 1 2.9172 -1.1204 1.0290 30 1 1.0869 0.6165 2.5525 31 1 2.7587 1.0464 2.1182 32 1 2.7242 -2.0223 7.7078 33 1 2.3577 -3.4864 6.7581 34 1 3.8628 -4.5859 8.5911 35 1 5.5786 -4.1180 8.6687 36 1 4.3233 -2.9960 9.2455 37 1 5.0856 -1.1440 7.5849 38 1 6.4249 -2.2862 7.3203 39 1 6.0880 -0.6091 5.4411 40 1 6.0156 -2.3141 4.9258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308505260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:49 Heat of formation + Delta-G solvation = 17.291717 kcal Electronic energy + Delta-G solvation = -19223.246825 eV Core-core repulsion = 16356.393790 eV Total energy + Delta-G solvation = -2866.853035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09011 -37.32660 -35.81066 -32.83201 -31.54470 -30.74138 -29.12695 -26.70142 -25.37025 -24.61889 -23.86650 -21.92114 -20.62046 -19.82362 -18.37413 -17.85764 -16.52613 -15.34597 -15.04917 -14.84145 -14.60692 -14.23133 -14.18684 -13.72235 -13.48166 -13.30029 -12.95725 -12.51842 -12.50814 -12.09769 -11.92226 -11.67512 -11.60230 -11.22664 -11.03791 -10.91751 -10.82111 -10.74397 -10.42784 -10.34962 -10.16201 -10.05705 -9.29393 -8.97569 -8.85900 -8.50574 -8.35170 -7.38652 -6.04367 -4.10630 0.92877 1.57723 2.03599 2.96737 3.28892 3.36633 3.41545 4.13664 4.40360 4.51129 4.56118 4.59980 4.99108 5.06114 5.24471 5.27019 5.31661 5.36469 5.40058 5.44193 5.50261 5.54238 5.69981 5.73228 5.82469 5.86386 5.94453 6.10046 6.14026 6.15764 6.42825 6.82520 7.09485 7.16516 7.42875 7.76129 7.84380 8.01950 8.22919 8.30876 8.58569 8.98363 9.55313 11.02137 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.003426 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.790658 B = 8170.576352 C = 8561.236837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.681 5.681 13 C 0.132 3.868 14 C 0.080 3.920 15 N -0.480 5.480 16 C 0.068 3.932 17 C -0.246 4.246 18 S 0.129 5.871 19 C -0.031 4.031 20 C -0.089 4.089 21 H 0.076 0.924 22 C -0.146 4.146 23 C -0.113 4.113 24 C -0.039 4.039 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.338 0.662 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 -5.606 21.089 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.314 5.314 13 C -0.001 4.001 14 C -0.199 4.199 15 N -0.194 5.194 16 C -0.064 4.064 17 C -0.367 4.367 18 S 0.386 5.614 19 C -0.071 4.071 20 C -0.109 4.109 21 H 0.094 0.906 22 C -0.203 4.203 23 C -0.151 4.151 24 C -0.078 4.078 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.832 -5.599 20.823 21.900 hybrid contribution 1.788 0.043 -0.972 2.036 sum 5.620 -5.555 19.851 21.366 Atomic orbital electron populations 1.21739 0.97670 0.99516 0.99493 1.19155 0.92691 0.92528 0.85122 0.97762 1.21265 1.31458 1.12583 0.90293 0.92097 1.24909 0.95005 0.94992 0.99053 1.69898 1.36674 1.22859 1.23437 0.86448 0.78616 0.79632 0.82759 1.19727 1.20948 1.21053 1.60857 1.32741 1.32286 1.05486 1.20531 0.99841 0.93184 0.86571 1.26985 0.90579 1.01228 1.01145 1.65870 1.18906 1.18823 1.15802 1.20812 0.96531 0.97468 0.91607 1.25960 0.95530 1.10366 1.04878 1.83848 1.11079 1.48023 1.18402 1.20152 0.97543 0.97404 0.91958 1.21208 0.94220 0.97594 0.97909 0.90585 1.21816 1.01886 1.00694 0.95907 1.21633 0.99542 0.98071 0.95812 1.20324 0.90132 1.02281 0.95103 0.89887 0.94807 0.97670 0.92924 0.84490 0.89657 0.92873 0.90474 0.90591 0.92499 0.92381 0.92553 0.91559 0.90947 0.90041 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.40 2.60 -68.87 -0.18 5.22 16 3 H 0.00 0.13 7.80 -51.93 -0.40 -0.28 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.68 -15.00 6.29 -109.22 -0.69 -15.69 16 13 C 0.13 2.50 6.06 -4.98 -0.03 2.47 16 14 C 0.08 1.39 6.90 -13.60 -0.09 1.30 16 15 N -0.48 -8.46 10.51 -7.32 -0.08 -8.53 16 16 C 0.07 1.00 6.78 -82.87 -0.56 0.44 16 17 C -0.25 -3.30 6.39 -35.44 -0.23 -3.53 16 18 S 0.13 1.89 23.17 -107.50 -2.49 -0.60 16 19 C -0.03 -0.30 5.58 -27.59 -0.15 -0.46 16 20 C -0.09 -0.75 2.73 -90.40 -0.25 -0.99 16 21 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 22 C -0.15 -0.92 9.18 37.16 0.34 -0.58 16 23 C -0.11 -0.96 5.18 -26.63 -0.14 -1.09 16 24 C -0.04 -0.43 6.29 -27.15 -0.17 -0.60 16 25 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.34 7.61 8.22 -39.29 -0.32 7.28 16 30 H 0.09 1.54 7.44 -51.93 -0.39 1.15 16 31 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.08 0.68 8.11 -51.93 -0.42 0.25 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -29.45 333.31 -10.55 -40.00 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.41 Total: 1.78 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.51 Total: -13.59 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.14 Total: -49.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.45 -10.55 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308505260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.291 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds