Wall clock time and date at job start Tue Mar 31 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47767 * 2 1 4 4 C 1.53006 * 109.47008 * 120.00361 * 2 1 3 5 5 N 1.46496 * 109.47242 * 174.99713 * 4 2 1 6 6 C 1.34772 * 120.00214 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47001 * 179.97438 * 8 6 5 10 10 C 1.38244 * 119.97491 * 269.72488 * 9 8 6 11 11 C 1.38201 * 120.02142 * 179.72306 * 10 9 8 12 12 C 1.38459 * 119.97601 * 0.57371 * 11 10 9 13 13 F 1.35094 * 120.02797 * 179.67746 * 12 11 10 14 14 C 1.38461 * 119.94519 * 359.70287 * 12 11 10 15 15 C 1.38193 * 119.98059 * 359.97438 * 14 12 11 16 16 N 1.46505 * 109.46969 * 239.99764 * 2 1 3 17 17 C 1.36932 * 119.99824 * 85.00383 * 16 2 1 18 18 H 1.08007 * 120.00007 * 359.97438 * 17 16 2 19 19 C 1.38813 * 120.00287 * 180.02562 * 17 16 2 20 20 N 1.31617 * 119.99855 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47150 * 89.99810 * 21 19 17 23 23 H 1.48500 * 109.47155 * 209.99779 * 21 19 17 24 24 H 1.48500 * 109.47276 * 329.99908 * 21 19 17 25 25 H 1.09002 * 109.46992 * 299.99857 * 1 2 3 26 26 H 1.09002 * 109.46952 * 59.99943 * 1 2 3 27 27 H 1.08994 * 109.47767 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47040 * 54.99370 * 4 2 1 29 29 H 1.09000 * 109.46833 * 294.99471 * 4 2 1 30 30 H 0.97000 * 119.99972 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.46978 * 60.00374 * 8 6 5 32 32 H 1.09000 * 109.46976 * 299.99619 * 8 6 5 33 33 H 1.08000 * 119.98716 * 359.97438 * 10 9 8 34 34 H 1.07996 * 120.01399 * 180.25476 * 11 10 9 35 35 H 1.08009 * 120.01051 * 179.97438 * 14 12 11 36 36 H 1.07999 * 119.99486 * 179.97438 * 15 14 12 37 37 H 0.96999 * 120.00160 * 265.00297 * 16 2 1 38 38 H 0.96997 * 120.00503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8266 1.1906 6 6 4.1730 -1.4285 2.1911 7 8 3.5699 -1.8827 3.1403 8 6 5.6749 -1.5362 2.1310 9 6 6.1773 -2.2457 3.3621 10 6 6.5110 -1.5195 4.4900 11 6 6.9664 -2.1696 5.6214 12 6 7.0996 -3.5478 5.6208 13 9 7.5509 -4.1838 6.7240 14 6 6.7706 -4.2735 4.4885 15 6 6.3091 -3.6220 3.3606 16 7 2.0183 -0.6907 -1.1962 17 6 2.1491 -0.0076 -2.3757 18 1 1.8919 1.0403 -2.4243 19 6 2.6113 -0.6620 -3.5093 20 7 2.9242 -1.9391 -3.4502 21 14 2.7904 0.2700 -5.1182 22 1 4.1531 0.8541 -5.2028 23 1 2.5793 -0.6609 -6.2557 24 1 1.7812 1.3580 -5.1750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6052 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1370 30 1 3.9823 -0.4630 0.4316 31 1 6.1092 -0.5375 2.0851 32 1 5.9636 -2.0993 1.2435 33 1 6.4119 -0.4440 4.4885 34 1 7.2231 -1.6025 6.5039 35 1 6.8745 -5.3486 4.4868 36 1 6.0527 -4.1878 2.4771 37 1 2.2489 -1.6318 -1.1526 38 1 3.2475 -2.3964 -4.2422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317282449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:13 Heat of formation + Delta-G solvation = -57.302494 kcal Electronic energy + Delta-G solvation = -20890.061473 eV Core-core repulsion = 17453.760614 eV Total energy + Delta-G solvation = -3436.300859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.97993 -39.88911 -38.58723 -36.31866 -33.54515 -32.65903 -31.79308 -31.23465 -28.84028 -27.69398 -25.33339 -23.67300 -23.16493 -21.87186 -20.23962 -19.85572 -17.78168 -17.47138 -16.64081 -16.53194 -16.14953 -15.65699 -15.29099 -15.09881 -14.64073 -14.09646 -13.95483 -13.69983 -13.64703 -13.36469 -13.02908 -12.42073 -12.24251 -12.13683 -12.09865 -11.78108 -11.67959 -11.38719 -11.08240 -10.91499 -10.79926 -10.38832 -10.06319 -9.76590 -9.64634 -9.19061 -9.03709 -8.64513 -8.62361 -7.09402 -5.86568 -3.16894 1.03034 1.15523 2.92182 3.33536 3.36401 3.42766 3.44056 3.77454 4.16515 4.50205 4.57452 4.59870 4.78410 5.08720 5.16154 5.17808 5.42920 5.43347 5.46886 5.50919 5.54731 5.80333 5.90628 5.91816 6.01181 6.05981 6.12443 6.15244 6.29768 6.41977 6.52777 6.71691 6.79047 6.81621 7.01115 7.61170 7.91665 8.30973 8.55481 9.42974 9.97669 10.33464 11.35330 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.003246 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.854165 B = 8624.536448 C = 9256.230587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.511 3.489 7 O -0.548 6.548 8 C -0.106 4.106 9 C -0.067 4.067 10 C -0.078 4.078 11 C -0.153 4.153 12 C 0.090 3.910 13 F -0.144 7.144 14 C -0.152 4.152 15 C -0.076 4.076 16 N -0.724 5.724 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.411 0.589 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 0.576 14.305 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.009 4.009 5 N -0.364 5.364 6 C 0.296 3.704 7 O -0.426 6.426 8 C -0.146 4.146 9 C -0.068 4.068 10 C -0.096 4.096 11 C -0.172 4.172 12 C 0.071 3.929 13 F -0.123 7.123 14 C -0.171 4.171 15 C -0.094 4.094 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.309 0.354 14.865 16.568 hybrid contribution 0.330 0.156 -1.191 1.246 sum 7.639 0.510 13.674 15.671 Atomic orbital electron populations 1.22364 0.98340 1.01281 1.00365 1.20510 0.92669 0.95722 0.86173 0.92886 1.21676 0.79597 1.01074 0.98565 1.45990 1.08253 1.58827 1.23354 1.20389 0.89321 0.78069 0.82579 1.90694 1.70276 1.48041 1.33617 1.20697 0.93316 1.02916 0.97632 1.19408 0.98622 0.93674 0.95054 1.20854 0.96966 1.00162 0.91620 1.21060 1.03530 0.92608 1.00022 1.17710 1.00655 0.90866 0.83643 1.91478 1.86839 1.82341 1.51639 1.21092 1.02688 1.00688 0.92608 1.20920 0.96724 0.93754 0.97970 1.42477 1.78086 1.10823 1.05263 1.19221 1.36965 0.93878 0.87349 0.91127 1.24742 1.02013 0.95900 0.98016 1.69658 1.50532 1.08603 1.29010 0.86212 0.77769 0.78606 0.83687 1.21693 1.21814 1.20799 0.94204 0.92325 0.93214 0.91905 0.91924 0.75290 0.87821 0.87387 0.85150 0.84907 0.84817 0.84904 0.78086 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.41 16 2 C 0.16 2.89 3.05 -67.93 -0.21 2.68 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 5 N -0.71 -11.10 5.39 -60.30 -0.32 -11.42 16 6 C 0.51 7.79 7.82 -10.99 -0.09 7.70 16 7 O -0.55 -10.21 16.03 5.56 0.09 -10.13 16 8 C -0.11 -1.21 5.83 -29.03 -0.17 -1.38 16 9 C -0.07 -0.80 4.37 -104.61 -0.46 -1.26 16 10 C -0.08 -0.86 9.70 -39.59 -0.38 -1.25 16 11 C -0.15 -1.68 10.03 -39.51 -0.40 -2.07 16 12 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 13 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 14 C -0.15 -1.73 10.03 -39.52 -0.40 -2.12 16 15 C -0.08 -0.89 9.70 -39.59 -0.38 -1.27 16 16 N -0.72 -16.46 4.56 -53.42 -0.24 -16.71 16 17 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 18 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 21 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.41 6.38 8.14 -40.82 -0.33 6.05 16 31 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.11 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.39 9.51 7.80 -40.82 -0.32 9.20 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -30.39 334.43 -7.64 -38.04 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.26 Total: 11.88 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.68 Total: -5.44 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.16 Total: -53.89 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.39 -7.64 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317282449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.266 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds