Wall clock time and date at job start Tue Mar 31 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47070 * 2 1 4 4 C 1.46900 * 111.00094 * 289.12220 * 3 2 1 5 5 C 1.50706 * 109.47066 * 160.31537 * 4 3 2 6 6 O 1.21287 * 120.00030 * 354.41584 * 5 4 3 7 7 N 1.34780 * 119.99832 * 174.41183 * 5 4 3 8 8 C 1.37100 * 119.99638 * 180.02562 * 7 5 4 9 9 H 1.07991 * 119.99820 * 359.97438 * 8 7 5 10 10 C 1.38949 * 119.99483 * 180.02562 * 8 7 5 11 11 N 1.31409 * 120.00213 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99759 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47099 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47280 * 119.99654 * 12 10 8 15 15 H 1.48496 * 109.47377 * 239.99691 * 12 10 8 16 16 C 1.46898 * 111.00097 * 165.16641 * 3 2 1 17 17 C 1.50701 * 109.47261 * 293.95443 * 16 3 2 18 18 C 1.38222 * 120.01122 * 105.00065 * 17 16 3 19 19 C 1.38216 * 120.02762 * 179.97438 * 18 17 16 20 20 C 1.38275 * 120.05052 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02286 * 0.02562 * 20 19 18 22 22 C 1.38439 * 120.01388 * 284.72369 * 17 16 3 23 23 F 1.35101 * 120.02443 * 0.02562 * 22 17 16 24 24 H 1.08996 * 109.46532 * 186.17539 * 1 2 3 25 25 H 1.09002 * 109.46772 * 306.17706 * 1 2 3 26 26 H 1.09003 * 109.47058 * 66.17950 * 1 2 3 27 27 H 1.09003 * 109.47317 * 240.00359 * 2 1 3 28 28 H 1.08997 * 109.47491 * 119.99699 * 2 1 3 29 29 H 1.08999 * 109.47214 * 280.31780 * 4 3 2 30 30 H 1.08999 * 109.47058 * 40.31902 * 4 3 2 31 31 H 0.96999 * 120.00303 * 0.02562 * 7 5 4 32 32 H 0.97004 * 119.99750 * 180.02562 * 11 10 8 33 33 H 1.09004 * 109.47131 * 53.95643 * 16 3 2 34 34 H 1.09002 * 109.47005 * 173.95489 * 16 3 2 35 35 H 1.07998 * 119.98674 * 359.97438 * 18 17 16 36 36 H 1.08003 * 119.98148 * 179.97438 * 19 18 17 37 37 H 1.07996 * 119.98939 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.00667 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7716 2.0311 -1.2957 5 6 1.8248 3.5280 -1.1291 6 8 1.9463 4.0111 -0.0232 7 7 1.7375 4.3298 -2.2089 8 6 1.7865 5.6915 -2.0573 9 1 1.8945 6.1216 -1.0726 10 6 1.6959 6.5181 -3.1705 11 7 1.5639 5.9947 -4.3685 12 14 1.7633 8.3734 -2.9640 13 1 1.9151 8.7061 -1.5247 14 1 2.9201 8.9142 -3.7221 15 1 0.5079 8.9750 -3.4809 16 6 3.4450 1.4395 0.3511 17 6 3.6280 0.9945 1.7793 18 6 4.1471 -0.2571 2.0523 19 6 4.3155 -0.6653 3.3621 20 6 3.9646 0.1775 4.4006 21 6 3.4445 1.4287 4.1300 22 6 3.2816 1.8414 2.8182 23 9 2.7789 3.0669 2.5524 24 1 -0.3632 -1.0217 0.1105 25 1 -0.3633 0.6066 0.8296 26 1 -0.3633 0.4151 -0.9402 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5332 1.7177 -2.0098 30 1 0.7874 1.7413 -1.6637 31 1 1.6401 3.9435 -3.0933 32 1 1.5011 6.5718 -5.1457 33 1 4.0075 0.7799 -0.3099 34 1 3.8079 2.4612 0.2395 35 1 4.4212 -0.9163 1.2420 36 1 4.7208 -1.6436 3.5746 37 1 4.0962 -0.1426 5.4236 38 1 3.1700 2.0866 4.9413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318620025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:01 Heat of formation + Delta-G solvation = -71.040267 kcal Electronic energy + Delta-G solvation = -21978.298545 eV Core-core repulsion = 18541.401972 eV Total energy + Delta-G solvation = -3436.896573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.58547 -40.57598 -39.77115 -37.94718 -35.82699 -33.31970 -33.09359 -31.61880 -31.18809 -28.83585 -26.68177 -25.55562 -23.60960 -22.85483 -21.84882 -20.81095 -19.82979 -18.33311 -17.87825 -17.18901 -17.07272 -16.88002 -16.42153 -16.05123 -15.95725 -15.43966 -15.21280 -15.07456 -14.97952 -14.33255 -14.00355 -13.92951 -13.51489 -13.42752 -13.17345 -13.05673 -12.80640 -12.65287 -12.51250 -12.38606 -12.19804 -12.12726 -11.85217 -11.67647 -11.44800 -10.25405 -9.95272 -9.86370 -9.49651 -9.15462 -8.44153 -5.91664 0.27995 0.33261 1.35835 1.39907 1.54437 2.12589 2.29318 2.60412 2.94086 3.22618 3.46078 3.54148 3.73195 3.85333 4.12144 4.16037 4.25154 4.31469 4.39999 4.43140 4.48437 4.56708 4.62821 4.65393 4.74548 4.95660 5.03560 5.10132 5.24205 5.32875 5.38481 5.43078 5.47783 5.51092 5.90430 6.04938 6.12037 6.25150 6.66077 7.18086 7.62384 8.20742 8.73920 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.004422 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.404876 B = 6330.686694 C = 7051.456478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.057 3.943 5 C 0.438 3.562 6 O -0.599 6.599 7 N -0.581 5.581 8 C -0.327 4.327 9 H 0.074 0.926 10 C -0.014 4.014 11 N -0.923 5.923 12 Si 0.990 3.010 13 H -0.277 1.277 14 H -0.270 1.270 15 H -0.270 1.270 16 C 0.104 3.896 17 C -0.126 4.126 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.087 4.087 21 C -0.174 4.174 22 C 0.085 3.915 23 F -0.149 7.149 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.394 0.606 32 H 0.276 0.724 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -18.343 10.549 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.256 5.256 4 C -0.074 4.074 5 C 0.225 3.775 6 O -0.483 6.483 7 N -0.220 5.220 8 C -0.457 4.457 9 H 0.092 0.908 10 C -0.213 4.213 11 N -0.565 5.565 12 Si 0.814 3.186 13 H -0.202 1.202 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.023 4.023 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.192 4.192 22 C 0.065 3.935 23 F -0.127 7.127 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.228 0.772 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.173 -17.627 11.450 21.430 hybrid contribution 0.103 1.229 -1.271 1.772 sum 4.276 -16.398 10.179 19.768 Atomic orbital electron populations 1.21783 0.94700 1.02316 1.01449 1.22213 0.96436 0.87046 1.01890 1.61470 1.16823 1.17911 1.29425 1.21757 1.03539 0.90809 0.91266 1.20917 0.82141 0.89865 0.84563 1.90562 1.54367 1.77241 1.26155 1.41944 1.65673 1.05974 1.08396 1.19635 1.48806 0.82615 0.94596 0.90798 1.25965 0.96629 1.04575 0.94129 1.69679 1.50574 1.37654 0.98566 0.84918 0.78364 0.77270 0.78055 1.20172 1.19520 1.19534 1.20820 0.88746 1.00312 0.92469 1.19931 1.02926 0.95872 0.94008 1.21251 0.97090 0.93291 0.98834 1.21563 1.00141 1.01342 0.91461 1.21391 0.95910 0.91652 1.01507 1.21419 1.04073 0.99693 0.94048 1.18240 0.98823 0.81435 0.94980 1.91594 1.84851 1.41321 1.94968 0.89733 0.94114 0.93104 0.92926 0.89783 0.91306 0.87329 0.77234 0.91447 0.91788 0.93381 0.82942 0.81762 0.81960 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.85 71.98 0.71 -2.77 16 2 C 0.05 1.26 5.55 86.30 0.48 1.74 16 3 N -0.53 -18.18 3.99 -905.35 -3.61 -21.79 16 4 C 0.06 2.10 5.32 85.56 0.46 2.56 16 5 C 0.44 22.03 7.33 87.66 0.64 22.68 16 6 O -0.60 -35.06 14.51 -3.05 -0.04 -35.10 16 7 N -0.58 -31.18 5.29 -306.98 -1.62 -32.80 16 8 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 9 H 0.07 4.72 7.16 -2.92 -0.02 4.70 16 10 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 11 N -0.92 -51.34 13.05 21.66 0.28 -51.05 16 12 Si 0.99 44.77 29.55 68.60 2.03 46.80 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 16 C 0.10 3.44 4.43 85.56 0.38 3.82 16 17 C -0.13 -3.69 4.48 -19.82 -0.09 -3.78 16 18 C -0.09 -1.70 8.70 22.26 0.19 -1.51 16 19 C -0.13 -1.96 10.04 22.27 0.22 -1.73 16 20 C -0.09 -1.50 10.04 22.26 0.22 -1.28 16 21 C -0.17 -4.40 10.03 22.31 0.22 -4.18 16 22 C 0.08 2.87 7.25 22.37 0.16 3.03 16 23 F -0.15 -6.67 16.17 44.97 0.73 -5.94 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.24 6.69 -2.39 -0.02 1.23 16 27 H 0.05 1.09 8.07 -2.39 -0.02 1.07 16 28 H 0.08 1.91 6.17 -2.39 -0.01 1.90 16 29 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 30 H 0.11 3.58 6.27 -2.39 -0.01 3.56 16 31 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 32 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.06 1.71 7.93 -2.38 -0.02 1.69 16 34 H 0.05 2.05 6.82 -2.39 -0.02 2.03 16 35 H 0.15 2.14 8.00 -2.91 -0.02 2.12 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -75.12 323.84 2.99 -72.13 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.35 Total: 28.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.88 Total: -0.28 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.95 Total: -105.65 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.04 Total: -35.10 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.73 Total: -5.94 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.12 2.99 -72.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318620025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds