Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81396 * 109.46949 * 2 1 4 4 C 1.81409 * 102.99858 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47023 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47207 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46981 * 55.00378 * 6 5 4 8 8 C 1.53002 * 109.47303 * 174.99864 * 6 5 4 9 9 N 1.46501 * 109.47453 * 295.00083 * 6 5 4 10 10 C 1.38822 * 119.99981 * 154.99479 * 9 6 5 11 11 C 1.39794 * 119.58827 * 0.02562 * 10 9 6 12 12 C 1.38595 * 119.49187 * 179.97438 * 11 10 9 13 13 C 1.38382 * 118.67909 * 359.97438 * 12 11 10 14 14 C 1.40555 * 119.15495 * 359.97438 * 13 12 11 15 15 C 1.41312 * 119.78654 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99836 * 359.97438 * 15 14 13 17 17 C 1.40030 * 119.99812 * 180.02562 * 15 14 13 18 18 N 1.30741 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47123 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47089 * 119.99544 * 19 17 15 22 22 H 1.48499 * 109.46635 * 239.99541 * 19 17 15 23 23 N 1.31955 * 119.57837 * 180.02562 * 10 9 6 24 24 H 1.09003 * 109.47319 * 299.99634 * 1 2 3 25 25 H 1.08993 * 109.47601 * 60.00426 * 1 2 3 26 26 H 1.09007 * 109.47439 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47010 * 239.99669 * 2 1 3 28 28 H 1.09002 * 109.47079 * 119.99881 * 2 1 3 29 29 H 1.08996 * 109.46780 * 59.99841 * 4 3 2 30 30 H 1.08997 * 109.46658 * 299.99647 * 4 3 2 31 31 H 1.09001 * 109.47291 * 59.99868 * 5 4 3 32 32 H 1.09002 * 109.47218 * 299.99929 * 5 4 3 33 33 H 1.08997 * 109.46995 * 60.00079 * 8 6 5 34 34 H 1.09001 * 109.47309 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.47129 * 299.99886 * 8 6 5 36 36 H 0.96999 * 119.99173 * 334.99933 * 9 6 5 37 37 H 1.08001 * 120.25405 * 0.24578 * 11 10 9 38 38 H 1.08005 * 120.65686 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.42240 * 179.97438 * 13 12 11 40 40 H 0.96996 * 120.00058 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6064 2.8816 -0.0015 6 6 6.1266 2.7092 -0.0015 7 1 6.4211 2.0822 -0.8431 8 6 6.7953 4.0796 -0.1280 9 7 6.5462 2.0748 1.2505 10 6 7.7311 1.3531 1.2999 11 6 8.5175 1.2377 0.1499 12 6 9.7003 0.5172 0.2016 13 6 10.0687 -0.0695 1.3995 14 6 9.2360 0.0834 2.5215 15 6 9.5996 -0.5096 3.7515 16 1 10.5145 -1.0783 3.8272 17 6 8.7731 -0.3605 4.8720 18 7 7.6652 0.3276 4.7802 19 14 9.2541 -1.1438 6.4982 20 1 10.5436 -1.8628 6.3391 21 1 9.3999 -0.0879 7.5322 22 1 8.2008 -2.1036 6.9159 23 7 8.1008 0.7846 2.4319 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.2398 0.9544 -0.8910 30 1 4.2405 0.9542 0.8890 31 1 4.3037 3.4334 0.8884 32 1 4.3029 3.4328 -0.8915 33 1 6.5008 4.7066 0.7135 34 1 7.8784 3.9567 -0.1285 35 1 6.4832 4.5516 -1.0596 36 1 5.9961 2.1590 2.0449 37 1 8.2079 1.7101 -0.7707 38 1 10.3224 0.4164 -0.6755 39 1 10.9845 -0.6376 1.4714 40 1 7.0929 0.4312 5.5564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = 17.716999 kcal Electronic energy + Delta-G solvation = -19289.901888 eV Core-core repulsion = 16423.067294 eV Total energy + Delta-G solvation = -2866.834593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.50647 -36.63064 -33.58653 -32.92164 -32.15130 -30.47271 -29.62266 -27.99606 -25.39810 -24.43568 -23.01390 -21.68875 -21.12828 -19.80916 -17.37111 -16.45840 -16.20389 -15.48797 -15.04083 -14.87374 -14.56214 -14.45158 -13.94592 -13.63764 -13.44701 -13.07280 -12.75697 -12.54162 -12.22096 -11.89681 -11.84777 -11.76990 -11.67313 -11.30377 -11.20433 -11.01110 -10.94157 -10.64364 -10.45567 -10.31883 -9.96972 -9.87286 -9.50720 -8.89007 -7.90780 -7.69841 -7.49736 -6.49851 -6.32138 -4.46609 1.63712 2.57996 2.86941 3.11702 3.16029 3.24930 3.30254 3.98722 4.18413 4.77371 4.80158 4.83524 4.87303 5.02943 5.16292 5.22340 5.54796 5.55607 5.61293 5.66284 5.72980 5.87100 5.87445 5.98715 6.08351 6.08470 6.16882 6.27884 6.50398 6.65788 6.86766 6.91072 6.97105 7.25918 7.61311 7.82641 7.93834 8.18196 8.38553 8.70227 8.81474 9.13706 10.25660 10.41304 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.004453 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.913213 B = 6286.325748 C = 7524.931233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 S -0.280 6.280 4 C -0.076 4.076 5 C -0.107 4.107 6 C 0.166 3.834 7 H 0.077 0.923 8 C -0.165 4.165 9 N -0.733 5.733 10 C 0.413 3.587 11 C -0.368 4.368 12 C -0.033 4.033 13 C -0.318 4.318 14 C 0.293 3.707 15 C -0.435 4.435 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.716 5.716 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.532 5.532 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.394 0.606 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 2.438 -7.425 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.237 4.237 3 S -0.053 6.053 4 C -0.225 4.225 5 C -0.146 4.146 6 C 0.058 3.942 7 H 0.095 0.905 8 C -0.225 4.225 9 N -0.369 5.369 10 C 0.173 3.827 11 C -0.394 4.394 12 C -0.057 4.057 13 C -0.341 4.341 14 C 0.166 3.834 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.153 4.153 18 N -0.337 5.337 19 Si 0.728 3.272 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.200 1.200 23 N -0.253 5.253 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.478 3.534 -6.756 13.780 hybrid contribution 1.298 -1.525 0.242 2.017 sum -10.180 2.009 -6.514 12.251 Atomic orbital electron populations 1.21505 0.92430 1.02363 1.03031 1.23266 0.99931 0.95452 1.05033 1.86712 1.07310 1.13108 1.98189 1.23393 0.91410 1.01880 1.05788 1.21619 0.94552 0.94856 1.03570 1.20643 0.91299 0.93705 0.88598 0.90543 1.22281 1.02064 0.97140 1.00979 1.44267 1.23528 1.57978 1.11171 1.18525 0.85408 0.88425 0.90334 1.20629 1.02073 1.18625 0.98037 1.20598 0.94565 0.94516 0.96017 1.21528 1.04047 1.13409 0.95142 1.18198 0.86030 0.87355 0.91846 1.19617 1.06240 1.27981 0.92881 0.89918 1.26039 0.94395 0.94358 1.00511 1.70157 1.07957 1.26174 1.29461 0.86345 0.79763 0.79562 0.81554 1.18450 1.19932 1.19980 1.68228 1.18768 1.16615 1.21725 0.91723 0.91843 0.91266 0.90252 0.89988 0.90238 0.89148 0.90653 0.90202 0.92669 0.91729 0.92692 0.77083 0.89091 0.89058 0.88818 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.92 37.16 0.37 -0.80 16 2 C -0.09 -0.94 6.66 37.16 0.25 -0.69 16 3 S -0.28 -3.52 21.74 -107.50 -2.34 -5.85 16 4 C -0.08 -1.01 5.83 37.15 0.22 -0.79 16 5 C -0.11 -1.34 4.76 -26.74 -0.13 -1.47 16 6 C 0.17 2.49 2.26 -67.93 -0.15 2.33 16 7 H 0.08 1.19 6.44 -51.93 -0.33 0.85 16 8 C -0.17 -2.31 9.40 37.16 0.35 -1.96 16 9 N -0.73 -14.14 4.69 -53.90 -0.25 -14.39 16 10 C 0.41 9.86 7.63 -155.33 -1.18 8.68 16 11 C -0.37 -8.33 8.84 -38.87 -0.34 -8.67 16 12 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 13 C -0.32 -8.08 9.83 -38.66 -0.38 -8.46 16 14 C 0.29 8.15 6.55 -85.00 -0.56 7.60 16 15 C -0.44 -11.84 9.14 -37.74 -0.34 -12.19 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 17 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 18 N -0.72 -19.04 11.46 55.55 0.64 -18.40 16 19 Si 0.90 18.80 29.56 -169.99 -5.02 13.78 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 N -0.53 -14.58 7.89 -10.33 -0.08 -14.66 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.38 7.75 -51.93 -0.40 0.97 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.03 7.64 -51.93 -0.40 0.64 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.39 7.77 8.72 -40.82 -0.36 7.42 16 37 H 0.09 1.83 6.03 -52.49 -0.32 1.51 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -29.07 343.36 -10.71 -39.79 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.43 Total: 10.39 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -2.40 Total: -15.82 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.30 Total: -47.45 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.34 Total: -5.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.07 -10.71 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.505 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds