Wall clock time and date at job start Tue Mar 31 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46820 * 2 1 4 4 C 1.36573 * 120.00373 * 262.64197 * 3 2 1 5 5 H 1.07993 * 120.00493 * 191.39080 * 4 3 2 6 6 C 1.39261 * 119.99744 * 11.38846 * 4 3 2 7 7 N 1.31220 * 119.99836 * 27.17581 * 6 4 3 8 8 Si 1.86799 * 119.99864 * 207.17861 * 6 4 3 9 9 H 1.48498 * 109.47212 * 89.99883 * 8 6 4 10 10 H 1.48500 * 109.46985 * 209.99807 * 8 6 4 11 11 H 1.48502 * 109.47336 * 329.99972 * 8 6 4 12 12 C 1.34782 * 119.99885 * 82.64476 * 3 2 1 13 13 O 1.21514 * 119.99867 * 182.54615 * 12 3 2 14 14 C 1.48548 * 120.00089 * 2.54689 * 12 3 2 15 15 N 1.32865 * 119.99534 * 352.23743 * 14 12 3 16 16 C 1.32984 * 120.00163 * 179.76859 * 15 14 12 17 17 N 1.38033 * 119.99999 * 180.23380 * 16 15 14 18 18 N 1.32882 * 119.99615 * 0.50748 * 16 15 14 19 19 C 1.32859 * 119.99509 * 359.74344 * 18 16 15 20 20 N 1.38023 * 120.00373 * 179.97438 * 19 18 16 21 21 C 1.46505 * 120.00280 * 180.02562 * 20 19 18 22 22 C 1.46504 * 119.99858 * 0.02562 * 20 19 18 23 23 N 1.32833 * 120.00165 * 172.51388 * 14 12 3 24 24 H 1.08991 * 109.47396 * 59.99992 * 1 2 3 25 25 H 1.09003 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47229 * 299.99420 * 1 2 3 27 27 H 1.08996 * 109.47229 * 240.00580 * 2 1 3 28 28 H 1.08999 * 109.47047 * 120.00072 * 2 1 3 29 29 H 0.97002 * 119.99959 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99635 * 180.27654 * 17 16 15 31 31 H 0.96990 * 119.99892 * 0.27111 * 17 16 15 32 32 H 1.08999 * 109.46734 * 89.99971 * 21 20 19 33 33 H 1.08997 * 109.46853 * 210.00087 * 21 20 19 34 34 H 1.09002 * 109.46521 * 330.00131 * 21 20 19 35 35 H 1.09002 * 109.46737 * 90.00145 * 22 20 19 36 36 H 1.08996 * 109.47140 * 209.99895 * 22 20 19 37 37 H 1.08997 * 109.47116 * 330.00625 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3887 1.9747 -1.1730 5 1 2.9171 2.9164 -1.1585 6 6 2.0850 1.3653 -2.3878 7 7 1.0456 0.5697 -2.4810 8 14 3.1572 1.6805 -3.8846 9 1 4.2461 0.6721 -3.9347 10 1 2.3318 1.5793 -5.1149 11 1 3.7461 3.0408 -3.7941 12 6 2.1020 2.0664 1.1577 13 8 2.4629 3.2267 1.1522 14 6 1.7530 1.4031 2.4402 15 7 1.2130 0.1892 2.4348 16 6 0.9049 -0.4066 3.5831 17 7 0.3483 -1.6697 3.5777 18 7 1.1277 0.2163 4.7355 19 6 1.6631 1.4323 4.7406 20 7 1.8942 2.0797 5.9374 21 6 2.4840 3.4208 5.9430 22 6 1.5496 1.4259 7.2024 23 7 1.9758 2.0259 3.5922 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8343 0.1450 -3.3271 30 1 0.1198 -2.1026 4.4151 31 1 0.1856 -2.1244 2.7365 32 1 1.6904 4.1668 5.9020 33 1 3.0654 3.5582 6.8547 34 1 3.1350 3.5348 5.0762 35 1 2.4040 0.8502 7.5583 36 1 1.2871 2.1818 7.9424 37 1 0.7014 0.7591 7.0474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327862409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:25 Heat of formation + Delta-G solvation = 91.713662 kcal Electronic energy + Delta-G solvation = -22620.293664 eV Core-core repulsion = 19242.667344 eV Total energy + Delta-G solvation = -3377.626321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99738 -38.32968 -37.00441 -35.26746 -34.63458 -32.78152 -31.73201 -31.00387 -29.27967 -28.06597 -26.22771 -25.71909 -23.72637 -22.14757 -21.84869 -19.78517 -18.65360 -17.50120 -16.75691 -15.96822 -15.78161 -15.67738 -15.33757 -14.66977 -14.39453 -14.22734 -14.10812 -13.77452 -13.45698 -12.68406 -12.53276 -12.36344 -12.17502 -11.95288 -11.90529 -11.56630 -11.24760 -11.09857 -10.82200 -10.51881 -10.35266 -10.19778 -9.66100 -9.09827 -8.98719 -8.67669 -8.60724 -8.28128 -7.99714 -7.69193 -6.52817 -3.82432 1.35154 1.89347 2.73225 3.11547 3.20788 3.25815 3.46347 3.85920 3.93135 4.28685 4.66966 4.71871 5.10237 5.12372 5.21312 5.38639 5.41499 5.56900 5.74000 5.78759 6.00731 6.33686 6.62441 6.65964 6.79418 6.89380 6.92703 7.10982 7.17831 7.32272 7.41330 7.53147 7.58422 7.85566 7.93392 8.06104 8.43112 8.99565 9.13834 9.31944 9.99238 10.43381 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.005333 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.713031 B = 5249.055701 C = 6129.849534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.116 3.884 3 N -0.387 5.387 4 C -0.300 4.300 5 H 0.112 0.888 6 C 0.038 3.962 7 N -0.831 5.831 8 Si 0.924 3.076 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.469 3.531 13 O -0.572 6.572 14 C 0.417 3.583 15 N -0.602 5.602 16 C 0.613 3.387 17 N -0.813 5.813 18 N -0.664 5.664 19 C 0.616 3.384 20 N -0.588 5.588 21 C 0.103 3.897 22 C 0.106 3.894 23 N -0.597 5.597 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.273 0.727 30 H 0.410 0.590 31 H 0.416 0.584 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -5.557 12.493 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.007 4.007 3 N -0.103 5.103 4 C -0.430 4.430 5 H 0.129 0.871 6 C -0.170 4.170 7 N -0.467 5.467 8 Si 0.750 3.250 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.189 1.189 12 C 0.256 3.744 13 O -0.456 6.456 14 C 0.140 3.860 15 N -0.340 5.340 16 C 0.246 3.754 17 N -0.363 5.363 18 N -0.405 5.405 19 C 0.251 3.749 20 N -0.307 5.307 21 C -0.040 4.040 22 C -0.037 4.037 23 N -0.330 5.330 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.240 0.760 31 H 0.248 0.752 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.189 -4.965 12.514 13.516 hybrid contribution 0.036 -0.543 -0.536 0.764 sum -1.154 -5.508 11.979 13.235 Atomic orbital electron populations 1.21893 0.96220 0.99183 1.01394 1.21840 0.95245 0.82380 1.01271 1.43762 1.49877 1.11690 1.04970 1.19932 1.33137 1.08125 0.81804 0.87064 1.25418 0.95598 0.96650 0.99345 1.70101 1.20906 1.28693 1.27008 0.85957 0.79952 0.79575 0.79541 1.20032 1.20830 1.18946 1.16777 0.90170 0.86176 0.81268 1.90613 1.54232 1.15876 1.84850 1.23454 0.84781 0.84387 0.93396 1.69572 1.24996 1.13074 1.26309 1.19309 0.84586 0.86860 0.84622 1.41581 1.68318 1.14054 1.12350 1.67718 1.30446 1.12212 1.30156 1.18921 0.84903 0.84442 0.86602 1.45739 1.65705 1.17433 1.01827 1.21654 0.98264 0.80985 1.03136 1.21560 1.01141 0.97602 0.83388 1.68510 1.29401 1.38011 0.97107 0.89992 0.95086 0.95231 0.90487 0.90353 0.91665 0.75995 0.75211 0.92970 0.91608 0.89429 0.93298 0.91558 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.09 37.16 0.34 -2.48 16 2 C 0.12 2.68 4.87 -4.04 -0.02 2.66 16 3 N -0.39 -10.25 2.63 -115.66 -0.30 -10.55 16 4 C -0.30 -8.22 9.36 -15.06 -0.14 -8.36 16 5 H 0.11 3.19 7.36 -52.49 -0.39 2.81 16 6 C 0.04 0.95 4.78 -17.43 -0.08 0.87 16 7 N -0.83 -20.52 8.79 55.51 0.49 -20.04 16 8 Si 0.92 19.51 29.63 -169.99 -5.04 14.48 16 9 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 C 0.47 12.76 7.59 -12.00 -0.09 12.67 16 13 O -0.57 -17.19 16.52 5.35 0.09 -17.11 16 14 C 0.42 9.93 7.39 -156.39 -1.16 8.78 16 15 N -0.60 -12.44 4.49 -11.91 -0.05 -12.49 16 16 C 0.61 10.84 8.76 -322.21 -2.82 8.02 16 17 N -0.81 -10.01 9.05 29.84 0.27 -9.74 16 18 N -0.66 -11.83 9.28 -14.78 -0.14 -11.97 16 19 C 0.62 11.81 8.19 -322.23 -2.64 9.17 16 20 N -0.59 -8.90 3.36 -191.76 -0.64 -9.55 16 21 C 0.10 1.34 10.45 59.85 0.63 1.97 16 22 C 0.11 1.16 10.45 59.85 0.63 1.78 16 23 N -0.60 -13.49 9.01 -11.91 -0.11 -13.59 16 24 H 0.08 2.01 6.15 -51.93 -0.32 1.69 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.66 6.63 -51.93 -0.34 0.31 16 27 H 0.08 1.85 6.05 -51.93 -0.31 1.54 16 28 H 0.08 1.73 5.35 -51.93 -0.28 1.45 16 29 H 0.27 6.28 8.30 -40.82 -0.34 5.94 16 30 H 0.41 3.91 8.95 -40.82 -0.37 3.55 16 31 H 0.42 4.57 8.95 -40.82 -0.37 4.20 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.09 1.38 7.36 -51.93 -0.38 0.99 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.08 0.91 7.36 -51.93 -0.38 0.53 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -32.55 308.07 -10.54 -43.08 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.38 Total: 7.76 kcal Atomic # 6 Polarization: 40.43 SS G_CDS: -5.36 Total: 35.07 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.49 Total: -87.93 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.09 Total: -17.11 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.04 Total: 14.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.55 -10.54 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327862409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.796 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds