Wall clock time and date at job start Tue Mar 31 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.24587 * 2 1 4 4 C 1.51181 * 110.20767 * 238.12561 * 2 1 3 5 5 C 1.38180 * 131.77699 * 78.44958 * 4 2 1 6 6 C 1.38228 * 120.02743 * 180.02562 * 5 4 2 7 7 C 1.38260 * 120.00011 * 0.02562 * 6 5 4 8 8 C 1.38214 * 120.00585 * 359.97438 * 7 6 5 9 9 C 1.38179 * 120.03133 * 0.02562 * 8 7 6 10 10 C 1.51179 * 131.78445 * 179.97438 * 9 8 7 11 11 N 1.48051 * 110.20760 * 121.87487 * 2 1 3 12 12 C 1.38820 * 111.00273 * 332.08289 * 11 2 1 13 13 C 1.39796 * 119.58478 * 283.87698 * 12 11 2 14 14 C 1.38593 * 119.49177 * 180.02562 * 13 12 11 15 15 C 1.38397 * 118.67753 * 0.24847 * 14 13 12 16 16 C 1.40557 * 119.15064 * 359.50739 * 15 14 13 17 17 C 1.41314 * 119.78400 * 180.25019 * 16 15 14 18 18 H 1.08000 * 120.00086 * 7.70381 * 17 16 15 19 19 C 1.40030 * 119.99723 * 187.70083 * 17 16 15 20 20 N 1.30744 * 120.00017 * 352.88645 * 19 17 16 21 21 Si 1.86797 * 119.99671 * 172.88114 * 19 17 16 22 22 H 1.48509 * 109.47077 * 60.00263 * 21 19 17 23 23 H 1.48497 * 109.47144 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47449 * 300.00430 * 21 19 17 25 25 N 1.31953 * 119.58417 * 103.89020 * 12 11 2 26 26 H 1.09007 * 109.47049 * 304.44282 * 1 2 3 27 27 H 1.09002 * 109.47038 * 64.43854 * 1 2 3 28 28 H 1.08994 * 109.47533 * 184.44512 * 1 2 3 29 29 H 1.07994 * 119.98759 * 359.97438 * 5 4 2 30 30 H 1.07998 * 119.99834 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.99621 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.98674 * 180.02562 * 8 7 6 33 33 H 1.09007 * 110.20681 * 43.44350 * 10 9 8 34 34 H 1.09003 * 110.20799 * 281.55259 * 10 9 8 35 35 H 1.08000 * 120.25580 * 0.03939 * 13 12 11 36 36 H 1.07998 * 120.66194 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.41748 * 179.72673 * 15 14 13 38 38 H 0.97000 * 119.99608 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9072 1.0227 0.0000 4 6 2.0522 -0.7492 -1.2048 5 6 2.1766 -0.3857 -2.5321 6 6 2.6964 -1.2804 -3.4486 7 6 3.0917 -2.5399 -3.0374 8 6 2.9676 -2.9042 -1.7099 9 6 2.4481 -2.0104 -0.7931 10 6 2.1970 -2.1237 0.6933 11 7 2.0414 -0.7337 1.1799 12 6 1.1386 -0.6739 2.2327 13 6 1.0276 0.5019 2.9808 14 6 0.1260 0.5593 4.0318 15 6 -0.6383 -0.5597 4.3131 16 6 -0.4845 -1.7106 3.5211 17 6 -1.2619 -2.8589 3.7931 18 1 -2.0565 -2.8126 4.5230 19 6 -1.0019 -4.0568 3.1162 20 7 -0.1366 -4.0795 2.1362 21 14 -1.8912 -5.6225 3.6134 22 1 -3.3554 -5.4316 3.4553 23 1 -1.4414 -6.7430 2.7489 24 1 -1.5834 -5.9376 5.0315 25 7 0.3962 -1.7276 2.5149 26 1 -0.3633 0.5813 0.8476 27 1 -0.3633 0.4434 -0.9271 28 1 -0.3634 -1.0245 0.0796 29 1 1.8667 0.5976 -2.8538 30 1 2.7938 -0.9957 -4.4858 31 1 3.4975 -3.2391 -3.7536 32 1 3.2769 -3.8879 -1.3890 33 1 3.0456 -2.6012 1.1832 34 1 1.2856 -2.6922 0.8790 35 1 1.6395 1.3590 2.7414 36 1 0.0251 1.4578 4.6224 37 1 -1.3463 -0.5474 5.1285 38 1 0.0437 -4.9094 1.6676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328601432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:49 Heat of formation + Delta-G solvation = 86.471325 kcal Electronic energy + Delta-G solvation = -21677.352290 eV Core-core repulsion = 18678.055157 eV Total energy + Delta-G solvation = -2999.297133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46605 -38.34169 -36.24919 -33.62149 -31.70254 -31.21237 -30.41681 -29.15427 -28.38492 -25.90484 -24.74107 -23.40049 -21.59286 -20.96118 -20.53781 -19.47145 -17.51786 -16.21453 -15.74391 -15.34126 -15.03941 -14.73288 -14.42736 -14.14522 -13.81116 -13.48514 -13.04948 -12.67430 -12.51024 -12.13918 -12.08779 -11.91422 -11.72643 -11.29505 -11.17820 -11.11942 -11.02840 -10.77959 -10.58039 -10.51824 -10.26877 -10.11293 -9.39480 -8.93553 -8.55303 -8.24206 -8.05196 -7.59625 -7.07749 -6.52664 -4.58566 1.63372 1.68815 2.64712 2.93068 3.04455 3.06189 3.17436 3.89178 4.05410 4.52377 4.69377 4.80090 5.05235 5.22343 5.27496 5.64633 5.66364 5.76398 5.80776 5.85167 6.03814 6.10123 6.18218 6.25182 6.31184 6.42548 6.51195 6.61678 6.68602 6.73728 6.74866 6.82127 6.93470 6.97734 7.06635 7.21015 7.31949 7.34464 7.56299 7.71820 7.77710 8.09521 8.31195 8.63611 8.91136 9.96911 10.22427 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.006654 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.260733 B = 4207.253270 C = 5484.989609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 H 0.088 0.912 4 C -0.100 4.100 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.109 4.109 9 C -0.078 4.078 10 C 0.056 3.944 11 N -0.453 5.453 12 C 0.313 3.687 13 C -0.301 4.301 14 C -0.049 4.049 15 C -0.286 4.286 16 C 0.273 3.727 17 C -0.432 4.432 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.724 5.724 21 Si 0.908 3.092 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 N -0.507 5.507 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 2.184 -7.825 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 H 0.106 0.894 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.139 4.139 8 C -0.128 4.128 9 C -0.079 4.079 10 C -0.071 4.071 11 N -0.172 5.172 12 C 0.076 3.924 13 C -0.325 4.325 14 C -0.074 4.074 15 C -0.309 4.309 16 C 0.147 3.853 17 C -0.464 4.464 18 H 0.101 0.899 19 C -0.150 4.150 20 N -0.346 5.346 21 Si 0.732 3.268 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.189 1.189 25 N -0.223 5.223 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.736 1.501 -8.242 9.172 hybrid contribution -1.029 -0.201 0.481 1.153 sum 2.707 1.300 -7.761 8.321 Atomic orbital electron populations 1.22290 0.94655 1.03848 1.01592 1.21048 0.94029 0.97522 0.86148 0.89386 1.20628 0.99237 0.95983 0.94216 1.20401 1.00219 0.99557 0.91696 1.20917 1.01097 0.94207 0.98922 1.20976 1.00870 0.96545 0.95478 1.20459 1.00489 0.99254 0.92568 1.20958 0.95991 0.93970 0.96982 1.22002 1.05871 0.91683 0.87501 1.62937 1.39448 1.10665 1.04178 1.19737 0.89520 0.91113 0.92002 1.20691 1.08786 0.98957 1.04106 1.20747 0.94637 0.96663 0.95344 1.21687 1.07457 0.96120 1.05637 1.18305 0.88947 0.91330 0.86726 1.19546 1.14565 0.93100 1.19189 0.89869 1.26004 0.94575 1.00673 0.93764 1.69930 1.23775 1.27407 1.13452 0.86376 0.80405 0.80328 0.79649 1.19008 1.20247 1.18946 1.68512 1.08413 1.25875 1.19541 0.91271 0.92987 0.91098 0.86549 0.86345 0.86317 0.86276 0.90596 0.83615 0.88508 0.88429 0.88354 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.15 37.16 0.30 -2.89 16 2 C 0.12 2.26 3.55 -68.00 -0.24 2.02 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C -0.10 -1.76 5.57 -104.33 -0.58 -2.34 16 5 C -0.10 -1.48 10.04 -39.61 -0.40 -1.88 16 6 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 7 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 8 C -0.11 -1.73 10.04 -39.61 -0.40 -2.12 16 9 C -0.08 -1.45 6.26 -104.33 -0.65 -2.10 16 10 C 0.06 1.19 6.22 -4.08 -0.03 1.16 16 11 N -0.45 -9.76 5.47 -165.87 -0.91 -10.67 16 12 C 0.31 7.44 4.17 -155.33 -0.65 6.79 16 13 C -0.30 -6.79 8.99 -38.87 -0.35 -7.14 16 14 C -0.05 -1.09 10.15 -39.39 -0.40 -1.49 16 15 C -0.29 -6.87 9.83 -38.65 -0.38 -7.25 16 16 C 0.27 7.19 6.54 -85.00 -0.56 6.64 16 17 C -0.43 -11.13 9.13 -37.74 -0.34 -11.48 16 18 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16 19 C 0.07 1.81 5.49 -17.34 -0.10 1.72 16 20 N -0.72 -18.01 10.11 55.55 0.56 -17.44 16 21 Si 0.91 18.10 29.57 -169.99 -5.03 13.07 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 25 N -0.51 -13.09 5.59 -10.33 -0.06 -13.14 16 26 H 0.07 1.42 6.62 -51.92 -0.34 1.07 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.58 7.70 -51.93 -0.40 1.18 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.15 3.48 4.95 -51.93 -0.26 3.23 16 35 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.27 6.24 8.29 -40.82 -0.34 5.91 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -27.28 312.51 -11.06 -38.33 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.78 Total: 9.72 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -5.56 Total: -24.57 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.40 Total: -41.26 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.28 -11.06 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328601432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.804 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds