Wall clock time and date at job start Tue Mar 31 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.24587 * 2 1 4 4 C 1.51181 * 110.20767 * 238.12561 * 2 1 3 5 5 C 1.38180 * 131.77699 * 78.44958 * 4 2 1 6 6 C 1.38228 * 120.02743 * 180.02562 * 5 4 2 7 7 C 1.38260 * 120.00011 * 0.02562 * 6 5 4 8 8 C 1.38214 * 120.00585 * 359.97438 * 7 6 5 9 9 C 1.38179 * 120.03133 * 0.02562 * 8 7 6 10 10 C 1.51179 * 131.78445 * 179.97438 * 9 8 7 11 11 N 1.48051 * 110.20760 * 121.87487 * 2 1 3 12 12 C 1.38820 * 111.00273 * 332.08289 * 11 2 1 13 13 C 1.39796 * 119.58478 * 283.87698 * 12 11 2 14 14 C 1.38593 * 119.49177 * 180.02562 * 13 12 11 15 15 C 1.38397 * 118.67753 * 0.24847 * 14 13 12 16 16 C 1.40557 * 119.15064 * 359.50739 * 15 14 13 17 17 C 1.41314 * 119.78400 * 180.25019 * 16 15 14 18 18 H 1.08000 * 120.00086 * 7.70381 * 17 16 15 19 19 C 1.40030 * 119.99723 * 187.70083 * 17 16 15 20 20 N 1.30744 * 120.00017 * 352.88645 * 19 17 16 21 21 Si 1.86797 * 119.99671 * 172.88114 * 19 17 16 22 22 H 1.48509 * 109.47077 * 60.00263 * 21 19 17 23 23 H 1.48497 * 109.47144 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47449 * 300.00430 * 21 19 17 25 25 N 1.31953 * 119.58417 * 103.89020 * 12 11 2 26 26 H 1.09007 * 109.47049 * 304.44282 * 1 2 3 27 27 H 1.09002 * 109.47038 * 64.43854 * 1 2 3 28 28 H 1.08994 * 109.47533 * 184.44512 * 1 2 3 29 29 H 1.07994 * 119.98759 * 359.97438 * 5 4 2 30 30 H 1.07998 * 119.99834 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.99621 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.98674 * 180.02562 * 8 7 6 33 33 H 1.09007 * 110.20681 * 43.44350 * 10 9 8 34 34 H 1.09003 * 110.20799 * 281.55259 * 10 9 8 35 35 H 1.08000 * 120.25580 * 0.03939 * 13 12 11 36 36 H 1.07998 * 120.66194 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.41748 * 179.72673 * 15 14 13 38 38 H 0.97000 * 119.99608 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9072 1.0227 0.0000 4 6 2.0522 -0.7492 -1.2048 5 6 2.1766 -0.3857 -2.5321 6 6 2.6964 -1.2804 -3.4486 7 6 3.0917 -2.5399 -3.0374 8 6 2.9676 -2.9042 -1.7099 9 6 2.4481 -2.0104 -0.7931 10 6 2.1970 -2.1237 0.6933 11 7 2.0414 -0.7337 1.1799 12 6 1.1386 -0.6739 2.2327 13 6 1.0276 0.5019 2.9808 14 6 0.1260 0.5593 4.0318 15 6 -0.6383 -0.5597 4.3131 16 6 -0.4845 -1.7106 3.5211 17 6 -1.2619 -2.8589 3.7931 18 1 -2.0565 -2.8126 4.5230 19 6 -1.0019 -4.0568 3.1162 20 7 -0.1366 -4.0795 2.1362 21 14 -1.8912 -5.6225 3.6134 22 1 -3.3554 -5.4316 3.4553 23 1 -1.4414 -6.7430 2.7489 24 1 -1.5834 -5.9376 5.0315 25 7 0.3962 -1.7276 2.5149 26 1 -0.3633 0.5813 0.8476 27 1 -0.3633 0.4434 -0.9271 28 1 -0.3634 -1.0245 0.0796 29 1 1.8667 0.5976 -2.8538 30 1 2.7938 -0.9957 -4.4858 31 1 3.4975 -3.2391 -3.7536 32 1 3.2769 -3.8879 -1.3890 33 1 3.0456 -2.6012 1.1832 34 1 1.2856 -2.6922 0.8790 35 1 1.6395 1.3590 2.7414 36 1 0.0251 1.4578 4.6224 37 1 -1.3463 -0.5474 5.1285 38 1 0.0437 -4.9094 1.6676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328601432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:48 Heat of formation + Delta-G solvation = 72.984358 kcal Electronic energy + Delta-G solvation = -21677.937129 eV Core-core repulsion = 18678.055157 eV Total energy + Delta-G solvation = -2999.881972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95342 -39.93645 -37.74867 -35.43943 -33.17082 -32.67277 -32.21562 -30.53242 -30.04172 -27.66852 -26.33223 -24.84680 -23.32958 -22.43873 -21.90715 -21.06901 -19.35019 -17.80988 -17.06028 -16.77645 -16.59649 -16.42478 -16.13911 -15.74886 -15.21862 -14.94472 -14.58307 -14.18200 -13.99069 -13.72098 -13.60811 -13.42467 -13.27516 -12.87448 -12.80823 -12.68869 -12.62184 -12.51726 -12.28135 -11.90148 -11.83550 -11.56414 -11.18431 -10.57250 -9.98026 -9.76382 -9.62984 -9.36048 -8.81614 -8.33881 -6.51120 0.44241 0.50219 0.83445 1.15144 1.39418 1.49986 1.53471 2.21049 2.77052 2.86629 3.03305 3.42903 3.63420 3.89904 4.10756 4.14879 4.25062 4.26601 4.34597 4.54547 4.56256 4.63423 4.66046 4.74819 4.84197 4.89944 4.93189 5.01730 5.09579 5.18426 5.22947 5.26406 5.47979 5.54772 5.56513 5.61633 5.71125 5.86149 5.89423 5.99674 6.12951 6.23016 6.47996 6.77029 7.03030 8.11638 8.41686 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.006654 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.260733 B = 4207.253270 C = 5484.989609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.120 3.880 3 H 0.104 0.896 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.109 4.109 10 C 0.059 3.941 11 N -0.460 5.460 12 C 0.303 3.697 13 C -0.305 4.305 14 C -0.044 4.044 15 C -0.308 4.308 16 C 0.239 3.761 17 C -0.467 4.467 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.750 5.750 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.262 1.262 25 N -0.526 5.526 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 2.711 -10.099 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.122 0.878 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.068 4.068 11 N -0.180 5.180 12 C 0.066 3.934 13 C -0.330 4.330 14 C -0.069 4.069 15 C -0.330 4.330 16 C 0.113 3.887 17 C -0.498 4.498 18 H 0.105 0.895 19 C -0.191 4.191 20 N -0.372 5.372 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.187 1.187 25 N -0.243 5.243 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.186 2.052 -10.521 11.508 hybrid contribution -1.076 -0.285 1.085 1.554 sum 3.110 1.767 -9.436 10.091 Atomic orbital electron populations 1.22111 0.95311 1.01116 1.02271 1.21105 0.93441 0.98137 0.85964 0.87790 1.20621 1.00569 0.95389 0.95093 1.20772 0.99538 1.01177 0.90390 1.21431 0.98682 0.93348 1.00517 1.21411 0.99516 0.97506 0.94738 1.20713 1.00384 0.99255 0.93473 1.20837 0.98968 0.95695 0.95513 1.21750 1.03771 0.91197 0.90067 1.62921 1.38928 1.11157 1.04964 1.20105 0.89394 0.91183 0.92742 1.20996 1.08925 0.99127 1.03929 1.21117 0.93334 0.97305 0.95099 1.21871 1.08620 0.96380 1.06164 1.18797 0.89720 0.92584 0.87587 1.19876 1.15416 0.94196 1.20343 0.89503 1.26861 0.95233 1.03520 0.93446 1.70058 1.24668 1.28337 1.14094 0.85249 0.79131 0.76039 0.79214 1.18418 1.19413 1.18655 1.68534 1.08962 1.27068 1.19768 0.93034 0.90030 0.95009 0.83827 0.82291 0.82778 0.85634 0.92419 0.86575 0.86606 0.84739 0.87330 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.87 8.15 71.98 0.59 -5.28 16 2 C 0.12 4.53 3.55 44.10 0.16 4.68 16 3 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 4 C -0.12 -3.97 5.57 -19.68 -0.11 -4.08 16 5 C -0.10 -2.63 10.04 22.25 0.22 -2.41 16 6 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 7 C -0.11 -2.69 10.05 22.27 0.22 -2.47 16 8 C -0.12 -3.67 10.04 22.25 0.22 -3.45 16 9 C -0.11 -4.09 6.26 -19.68 -0.12 -4.22 16 10 C 0.06 2.66 6.22 85.48 0.53 3.19 16 11 N -0.46 -20.51 5.47 -678.68 -3.71 -24.22 16 12 C 0.30 14.91 4.17 133.42 0.56 15.46 16 13 C -0.31 -13.87 8.99 22.73 0.20 -13.67 16 14 C -0.04 -1.95 10.15 22.39 0.23 -1.72 16 15 C -0.31 -15.17 9.83 22.87 0.22 -14.94 16 16 C 0.24 13.21 6.54 40.18 0.26 13.47 16 17 C -0.47 -25.12 9.13 23.46 0.21 -24.91 16 18 H 0.09 4.39 7.86 -2.91 -0.02 4.37 16 19 C 0.03 1.58 5.49 85.29 0.47 2.05 16 20 N -0.75 -39.19 10.11 21.84 0.22 -38.97 16 21 Si 0.98 38.03 29.57 68.60 2.03 40.06 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 N -0.53 -28.64 5.59 -186.59 -1.04 -29.68 16 26 H 0.05 2.15 6.62 -2.38 -0.02 2.14 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.03 1.47 7.70 -2.39 -0.02 1.45 16 29 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.12 5.96 4.95 -2.39 -0.01 5.95 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 36 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 Total: -1.00 -62.99 312.51 2.65 -60.34 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 1.06 Total: 33.22 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.09 Total: -40.74 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -4.53 Total: -92.87 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -62.99 2.65 -60.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328601432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.324 kcal (2) G-P(sol) polarization free energy of solvation -62.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds