Wall clock time and date at job start Tue Mar 31 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31611 * 120.00081 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47483 * 90.00178 * 9 7 5 11 11 H 1.48498 * 109.47011 * 210.00042 * 9 7 5 12 12 H 1.48502 * 109.47495 * 329.99664 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.53001 * 109.46887 * 64.99956 * 13 2 1 16 16 N 1.46499 * 109.47047 * 305.00007 * 13 2 1 17 17 C 1.34781 * 119.99668 * 204.99720 * 16 13 2 18 18 O 1.21553 * 120.00082 * 0.02562 * 17 16 13 19 19 C 1.47853 * 119.99618 * 179.97438 * 17 16 13 20 20 C 1.39586 * 120.13315 * 359.73042 * 19 17 16 21 21 C 1.37946 * 119.90450 * 179.69656 * 20 19 17 22 22 C 1.38345 * 120.16985 * 0.59712 * 21 20 19 23 23 C 1.38552 * 120.27033 * 359.68143 * 22 21 20 24 24 F 1.35102 * 119.95586 * 180.02562 * 23 22 21 25 25 C 1.38212 * 120.09137 * 0.02562 * 23 22 21 26 26 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 30 30 H 0.97008 * 120.00329 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46997 * 60.00245 * 15 13 2 32 32 H 1.09000 * 109.46522 * 179.97438 * 15 13 2 33 33 H 1.08994 * 109.47269 * 299.99642 * 15 13 2 34 34 H 0.96996 * 119.99988 * 25.00363 * 16 13 2 35 35 H 1.07994 * 120.05006 * 359.97438 * 20 19 17 36 36 H 1.07995 * 119.91867 * 180.29988 * 21 20 19 37 37 H 1.08007 * 119.87004 * 179.69794 * 22 21 20 38 38 H 1.07999 * 120.09002 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.7220 -0.0091 -4.6468 9 14 3.0446 -2.4771 -3.4283 10 1 1.8455 -3.2952 -3.7415 11 1 4.1155 -2.7706 -4.4143 12 1 3.5256 -2.8065 -2.0625 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0913 -0.1939 3.6276 18 8 3.1492 -0.7873 3.7064 19 6 1.5020 0.4299 4.8316 20 6 0.2906 1.1177 4.7429 21 6 -0.2581 1.6925 5.8704 22 6 0.3953 1.5996 7.0863 23 6 1.6009 0.9236 7.1814 24 9 2.2333 0.8364 8.3721 25 6 2.1576 0.3384 6.0599 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.2490 -1.6318 -1.1527 30 1 3.0419 -0.4672 -5.4398 31 1 2.0699 -2.6550 0.3002 32 1 1.9989 -2.7094 2.0777 33 1 0.5489 -2.2724 1.1421 34 1 0.6118 0.3700 2.3794 35 1 -0.2187 1.1958 3.7937 36 1 -1.1978 2.2205 5.8030 37 1 -0.0363 2.0557 7.9651 38 1 3.0972 -0.1889 6.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328978109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:40 Heat of formation + Delta-G solvation = -62.175308 kcal Electronic energy + Delta-G solvation = -21320.799058 eV Core-core repulsion = 17884.286899 eV Total energy + Delta-G solvation = -3436.512160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.96837 -41.43681 -39.50511 -38.39871 -35.74915 -33.87122 -32.53449 -31.81380 -30.80783 -30.00414 -26.18127 -25.70902 -24.21464 -23.61349 -21.75773 -20.83946 -20.11602 -19.28330 -17.64077 -17.24004 -17.17907 -16.78247 -16.74811 -16.57354 -16.08159 -15.76111 -15.50306 -15.17566 -14.82781 -14.61311 -14.22642 -14.06876 -13.73204 -13.33409 -13.18203 -13.12637 -12.94814 -12.88611 -12.64598 -12.39604 -12.25679 -11.89454 -11.78580 -11.63327 -11.12833 -11.00049 -10.33007 -10.08433 -9.83033 -9.35095 -8.02217 -5.35807 -0.35208 0.11407 1.37885 1.40184 1.46887 1.70888 1.95041 2.48001 2.67290 3.18266 3.29744 3.51547 3.64381 3.74123 3.81538 3.99960 4.03135 4.04152 4.25616 4.27474 4.56722 4.62902 4.65438 4.82724 4.91985 4.92462 4.99649 5.04486 5.14335 5.16349 5.22691 5.24414 5.41021 5.62159 5.76768 5.78426 6.21467 6.45777 7.06962 7.11935 7.82928 8.00573 9.19096 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037217 B = 0.003389 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.167619 B = 8260.849627 C = 8634.337451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.749 5.749 5 C -0.226 4.226 6 H 0.062 0.938 7 C -0.061 4.061 8 N -0.983 5.983 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.298 1.298 12 H -0.256 1.256 13 C 0.144 3.856 14 H 0.063 0.937 15 C -0.157 4.157 16 N -0.696 5.696 17 C 0.554 3.446 18 O -0.580 6.580 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.084 4.084 22 C -0.120 4.120 23 C 0.074 3.926 24 F -0.146 7.146 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.366 0.634 30 H 0.257 0.743 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 2.364 25.280 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.060 3.940 3 H 0.068 0.932 4 N -0.394 5.394 5 C -0.357 4.357 6 H 0.080 0.920 7 C -0.253 4.253 8 N -0.633 5.633 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.225 1.225 12 H -0.180 1.180 13 C 0.038 3.962 14 H 0.081 0.919 15 C -0.216 4.216 16 N -0.350 5.350 17 C 0.342 3.658 18 O -0.460 6.460 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.102 4.102 22 C -0.138 4.138 23 C 0.055 3.945 24 F -0.125 7.125 25 C -0.136 4.136 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.201 0.799 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.185 0.815 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.033 2.120 25.207 27.213 hybrid contribution 0.766 -0.935 -0.491 1.305 sum -9.267 1.185 24.716 26.423 Atomic orbital electron populations 1.22366 0.95846 1.02307 1.01557 1.20515 0.94309 0.95019 0.84153 0.93228 1.42812 1.80193 1.09805 1.06598 1.19017 1.35209 0.94655 0.86819 0.91971 1.25411 1.02402 1.02173 0.95277 1.69862 1.54831 1.37603 1.01032 0.85561 0.77911 0.81376 0.77877 1.20011 1.22492 1.18050 1.20998 0.97871 0.93381 0.83949 0.91883 1.22130 1.03084 0.94899 1.01458 1.45848 1.26127 1.56139 1.06884 1.18609 0.83873 0.79336 0.83944 1.90771 1.24215 1.44887 1.86173 1.19635 0.97710 1.02693 0.92133 1.21768 0.92921 0.94618 1.01354 1.21456 1.01010 0.97709 0.90012 1.21770 0.92688 0.97977 1.01389 1.17745 0.94092 1.02132 0.80494 1.91501 1.82048 1.94838 1.44092 1.21193 1.00979 0.99889 0.91496 0.92015 0.90002 0.93918 0.79867 0.93379 0.92587 0.92669 0.89945 0.74454 0.82116 0.80104 0.81489 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 9.01 71.98 0.65 -3.77 16 2 C 0.17 5.78 2.93 44.99 0.13 5.91 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.75 -33.34 4.84 -322.94 -1.56 -34.90 16 5 C -0.23 -12.48 10.41 84.03 0.87 -11.60 16 6 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 8 N -0.98 -62.39 13.97 21.65 0.30 -62.09 16 9 Si 0.95 45.14 27.74 68.60 1.90 47.04 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 13 C 0.14 4.38 2.62 44.99 0.12 4.49 16 14 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 15 C -0.16 -4.50 9.00 71.98 0.65 -3.85 16 16 N -0.70 -16.25 4.94 -445.38 -2.20 -18.45 16 17 C 0.55 14.92 7.74 86.79 0.67 15.59 16 18 O -0.58 -20.89 16.01 -3.88 -0.06 -20.96 16 19 C -0.12 -2.40 5.87 -20.09 -0.12 -2.52 16 20 C -0.09 -1.04 9.54 22.53 0.21 -0.82 16 21 C -0.08 -0.66 10.03 22.23 0.22 -0.43 16 22 C -0.12 -1.29 10.02 22.37 0.22 -1.06 16 23 C 0.07 1.33 7.29 22.34 0.16 1.49 16 24 F -0.15 -2.95 17.26 44.97 0.78 -2.17 16 25 C -0.12 -2.52 9.57 22.58 0.22 -2.30 16 26 H 0.06 1.62 6.56 -2.39 -0.02 1.60 16 27 H 0.08 1.46 6.29 -2.39 -0.02 1.44 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.37 15.89 3.63 -92.71 -0.34 15.55 16 30 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 31 H 0.06 1.75 6.29 -2.39 -0.02 1.74 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.99 6.56 -2.39 -0.02 1.97 16 34 H 0.41 6.65 4.61 -92.71 -0.43 6.22 16 35 H 0.16 0.99 6.40 -2.91 -0.02 0.97 16 36 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 37 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.13 3.20 7.65 -2.91 -0.02 3.18 16 Total: -1.00 -74.59 317.45 3.92 -70.67 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.28 Total: 22.81 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.48 Total: -1.96 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -3.46 Total: -115.44 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -74.59 3.92 -70.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328978109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.496 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds