Wall clock time and date at job start Tue Mar 31 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28728 * 125.31721 * 2 1 4 4 N 1.28981 * 108.98553 * 180.02562 * 3 2 1 5 5 C 1.34185 * 107.25792 * 359.97438 * 4 3 2 6 6 C 1.48001 * 126.70188 * 179.97438 * 5 4 3 7 7 O 1.21544 * 120.00186 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99873 * 0.03068 * 6 5 4 9 9 C 1.46499 * 119.99711 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.91278 * 336.25026 * 9 8 6 11 11 C 1.53783 * 113.61670 * 107.50030 * 9 8 6 12 12 C 1.53787 * 87.08023 * 89.11251 * 11 9 8 13 13 H 1.08996 * 113.69332 * 270.87590 * 12 11 9 14 14 C 1.53004 * 113.61355 * 139.98452 * 12 11 9 15 15 N 1.46499 * 109.47198 * 87.50373 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31612 * 120.00054 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99751 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47517 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.46736 * 209.99481 * 20 18 16 23 23 H 1.48496 * 109.47375 * 329.99177 * 20 18 16 24 24 C 1.53782 * 87.08149 * 25.43612 * 12 11 9 25 25 N 1.28877 * 125.32550 * 180.31623 * 2 1 3 26 26 H 1.09001 * 109.47370 * 89.97669 * 1 2 3 27 27 H 1.09006 * 109.46806 * 209.97236 * 1 2 3 28 28 H 1.08994 * 109.47263 * 329.96910 * 1 2 3 29 29 H 0.96996 * 119.99943 * 359.97438 * 8 6 5 30 30 H 1.08998 * 113.61533 * 334.56762 * 11 9 8 31 31 H 1.08998 * 113.62034 * 203.66030 * 11 9 8 32 32 H 1.09009 * 109.46730 * 327.50161 * 14 12 11 33 33 H 1.08998 * 109.46846 * 207.50705 * 14 12 11 34 34 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 35 35 H 0.96998 * 120.00381 * 180.02562 * 19 18 16 36 36 H 1.09001 * 113.61616 * 89.11044 * 24 12 11 37 37 H 1.08993 * 113.61391 * 220.01731 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0504 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4686 -0.6540 -0.0003 6 6 4.6694 -1.5192 -0.0013 7 8 4.5471 -2.7285 -0.0014 8 7 5.8984 -0.9662 -0.0019 9 6 7.0869 -1.8227 -0.0023 10 1 6.8942 -2.8163 0.4023 11 6 7.8339 -1.8393 -1.3465 12 6 8.6363 -0.6351 -0.8258 13 1 8.1767 0.3274 -1.0502 14 6 10.1213 -0.6840 -1.1911 15 7 10.3213 -0.0694 -2.5058 16 6 11.5776 -0.0034 -3.0468 17 1 12.4215 -0.4004 -2.5022 18 6 11.7663 0.5737 -4.2951 19 7 12.9738 0.6376 -4.8148 20 14 10.3066 1.2608 -5.2366 21 1 10.1156 2.6897 -4.8801 22 1 10.5592 1.1441 -6.6954 23 1 9.0845 0.4948 -4.8832 24 6 8.3336 -1.1466 0.5925 25 7 2.2102 -1.0515 -0.0058 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8896 0.5143 29 1 5.9960 -0.0012 -0.0021 30 1 7.1997 -1.6047 -2.2013 31 1 8.4382 -2.7335 -1.4993 32 1 10.4542 -1.7216 -1.2205 33 1 10.6974 -0.1386 -0.4436 34 1 9.5632 0.2867 -2.9951 35 1 13.1057 1.0412 -5.6869 36 1 9.0745 -1.8516 0.9698 37 1 8.1028 -0.3529 1.3029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330645211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:20 Heat of formation + Delta-G solvation = 137.057308 kcal Electronic energy + Delta-G solvation = -20978.390995 eV Core-core repulsion = 17602.730923 eV Total energy + Delta-G solvation = -3375.660073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.82276 -40.35355 -38.47046 -35.69752 -34.74108 -33.59248 -33.28232 -31.15972 -29.39212 -27.37631 -25.64594 -25.59001 -23.61617 -23.00860 -21.60280 -21.34521 -19.27897 -18.82760 -18.04570 -17.52234 -17.19325 -16.24714 -15.29193 -15.17659 -14.55171 -14.51031 -14.34084 -14.06588 -14.01784 -13.77132 -13.40239 -12.66949 -12.58493 -12.47761 -12.33366 -11.83759 -11.57123 -11.53548 -11.42505 -10.88141 -10.81874 -10.74944 -10.49454 -10.25891 -10.15545 -9.91738 -9.55113 -9.23491 -8.84226 -7.18035 -5.73397 -3.08177 0.57038 1.06312 1.30113 2.49387 2.77919 3.40645 3.43723 3.48125 3.59867 3.69753 4.27325 4.41065 4.55057 4.58461 4.62313 4.65094 4.82196 4.97932 5.01084 5.16379 5.50297 5.56534 5.58147 5.69178 5.81177 5.84963 5.96246 6.06906 6.10272 6.23189 6.48249 6.71750 6.83813 7.10263 7.67637 7.82135 8.03663 8.46087 9.25811 9.98427 10.18574 11.45237 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.003363 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.743447 B = 8322.828352 C = 9142.730889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.135 5.135 3 N -0.053 5.053 4 N -0.251 5.251 5 C 0.130 3.870 6 C 0.619 3.381 7 O -0.507 6.507 8 N -0.684 5.684 9 C 0.115 3.885 10 H 0.107 0.893 11 C -0.141 4.141 12 C -0.121 4.121 13 H 0.089 0.911 14 C 0.167 3.833 15 N -0.756 5.756 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.936 5.936 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.134 4.134 25 N -0.247 5.247 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.412 0.588 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.101 0.899 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.511 -1.859 13.436 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.048 5.048 3 N -0.047 5.047 4 N -0.127 5.127 5 C -0.154 4.154 6 C 0.399 3.601 7 O -0.378 6.378 8 N -0.336 5.336 9 C 0.011 3.989 10 H 0.125 0.875 11 C -0.179 4.179 12 C -0.140 4.140 13 H 0.107 0.893 14 C 0.040 3.960 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.584 5.584 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.173 4.173 25 N -0.101 5.101 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.249 0.751 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.719 -2.263 13.412 29.982 hybrid contribution -0.846 0.717 -0.933 1.449 sum -27.566 -1.546 12.479 30.298 Atomic orbital electron populations 1.22583 0.68305 1.07321 1.06590 1.50289 1.11225 1.00643 1.42641 1.78960 0.96313 1.13948 1.15499 1.76159 1.10183 1.10057 1.16252 1.25309 0.93212 0.90319 1.06534 1.16045 0.80723 0.85700 0.77644 1.90864 1.85514 1.12732 1.48717 1.45387 1.03954 1.11244 1.73021 1.22086 0.83131 0.94888 0.98836 0.87541 1.23479 0.98359 0.99760 0.96348 1.22859 0.97824 0.98224 0.95066 0.89319 1.20617 0.91216 0.96407 0.87778 1.42713 1.06694 1.72499 1.18219 1.19080 0.85145 1.32664 1.00347 0.89251 1.24674 0.96085 1.01151 0.97391 1.69700 1.19769 1.50420 1.18508 0.86538 0.83050 0.79230 0.79681 1.21095 1.21794 1.20336 1.23309 0.96040 1.00748 0.97176 1.75094 1.02408 1.14365 1.18241 0.87506 0.86668 0.86451 0.75138 0.91281 0.88435 0.95333 0.95429 0.80708 0.93110 0.88102 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.19 11.62 59.85 0.70 0.88 16 2 N -0.13 -1.16 4.39 -16.65 -0.07 -1.23 16 3 N -0.05 -0.57 13.23 60.35 0.80 0.23 16 4 N -0.25 -3.07 12.26 32.10 0.39 -2.68 16 5 C 0.13 1.65 8.14 -156.25 -1.27 0.38 16 6 C 0.62 8.30 7.84 -12.26 -0.10 8.21 16 7 O -0.51 -8.17 16.70 5.33 0.09 -8.08 16 8 N -0.68 -7.93 5.26 -53.91 -0.28 -8.22 16 9 C 0.12 1.34 4.32 -67.11 -0.29 1.05 16 10 H 0.11 1.26 7.47 -51.93 -0.39 0.87 16 11 C -0.14 -1.92 7.43 -25.91 -0.19 -2.12 16 12 C -0.12 -1.73 3.63 -89.80 -0.33 -2.05 16 13 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.17 3.14 6.10 -4.04 -0.02 3.11 16 15 N -0.76 -18.09 5.41 -59.90 -0.32 -18.41 16 16 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 19 N -0.94 -29.82 13.97 55.49 0.78 -29.05 16 20 Si 0.88 22.52 27.74 -169.99 -4.71 17.80 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 24 C -0.13 -1.47 7.39 -25.91 -0.19 -1.66 16 25 N -0.25 -2.87 12.17 32.11 0.39 -2.48 16 26 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.12 -0.02 8.14 -51.93 -0.42 -0.45 16 29 H 0.41 4.27 8.45 -40.82 -0.34 3.93 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.33 7.90 -51.93 -0.41 0.92 16 32 H 0.03 0.54 7.84 -51.92 -0.41 0.14 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 35 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 36 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -36.81 322.94 -4.78 -41.59 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.75 Total: 4.99 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.95 Total: 0.66 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 1.68 Total: -61.83 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.81 -4.78 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330645211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.647 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds