Wall clock time and date at job start Tue Mar 31 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28724 * 125.32303 * 2 1 4 4 N 1.28980 * 108.98513 * 179.97438 * 3 2 1 5 5 C 1.34179 * 107.25685 * 359.97438 * 4 3 2 6 6 C 1.48003 * 126.69902 * 179.97438 * 5 4 3 7 7 O 1.21540 * 120.00270 * 173.14690 * 6 5 4 8 8 N 1.34775 * 120.00362 * 353.15171 * 6 5 4 9 9 C 1.47082 * 120.88746 * 183.76259 * 8 6 5 10 10 C 1.53696 * 108.27578 * 128.75212 * 9 8 6 11 11 N 1.46894 * 109.25661 * 54.08633 * 10 9 8 12 12 C 1.46908 * 111.00070 * 172.60428 * 11 10 9 13 13 C 1.50696 * 109.46949 * 294.30223 * 12 11 10 14 14 H 1.08003 * 120.00311 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99987 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00258 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99608 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47182 * 90.00146 * 17 15 13 19 19 H 1.48509 * 109.47119 * 209.99943 * 17 15 13 20 20 H 1.48500 * 109.47355 * 329.99644 * 17 15 13 21 21 C 1.46902 * 111.27053 * 296.75374 * 11 10 9 22 22 C 1.47088 * 120.87812 * 4.03908 * 8 6 5 23 23 N 1.28877 * 125.31750 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47059 * 90.02625 * 1 2 3 25 25 H 1.08999 * 109.47481 * 210.02661 * 1 2 3 26 26 H 1.09003 * 109.46790 * 330.02944 * 1 2 3 27 27 H 1.08997 * 109.63049 * 248.52141 * 9 8 6 28 28 H 1.09002 * 109.62459 * 9.10435 * 9 8 6 29 29 H 1.09001 * 109.64955 * 294.08131 * 10 9 8 30 30 H 1.08998 * 109.41852 * 173.94981 * 10 9 8 31 31 H 1.09004 * 109.46639 * 54.30298 * 12 11 10 32 32 H 1.08995 * 109.46854 * 174.30010 * 12 11 10 33 33 H 0.96999 * 120.00001 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.49285 * 303.14554 * 21 11 10 35 35 H 1.08998 * 109.49571 * 183.06618 * 21 11 10 36 36 H 1.08994 * 109.62410 * 350.89859 * 22 8 6 37 37 H 1.08999 * 109.62598 * 111.47801 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2093 1.0503 0.0000 4 7 3.4470 0.6874 0.0005 5 6 3.4685 -0.6542 0.0015 6 6 4.6692 -1.5195 0.0018 7 8 4.5513 -2.7225 0.1283 8 7 5.8935 -0.9735 -0.1380 9 6 7.0928 -1.8207 -0.2227 10 6 7.8970 -1.3951 -1.4615 11 7 8.1604 0.0485 -1.3955 12 6 9.0739 0.4665 -2.4674 13 6 10.4258 -0.1625 -2.2491 14 1 10.5902 -0.8078 -1.3988 15 6 11.4529 0.0859 -3.1348 16 7 12.6326 -0.4634 -2.9445 17 14 11.1687 1.2027 -4.6049 18 1 11.4851 2.6044 -4.2302 19 1 12.0471 0.7795 -5.7251 20 1 9.7483 1.1120 -5.0283 21 6 6.9114 0.8207 -1.4373 22 6 6.0662 0.4857 -0.2038 23 7 2.2101 -1.0516 0.0005 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 7.6984 -1.6888 0.6738 28 1 6.7970 -2.8655 -0.3178 29 1 7.3275 -1.6201 -2.3632 30 1 8.8426 -1.9368 -1.4833 31 1 8.6752 0.1461 -3.4300 32 1 9.1724 1.5520 -2.4581 33 1 13.3552 -0.2883 -3.5674 34 1 6.3557 0.5648 -2.3394 35 1 7.1422 1.8859 -1.4417 36 1 5.0915 0.9663 -0.2863 37 1 6.5750 0.8350 0.6946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330801159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:44 Heat of formation + Delta-G solvation = 106.662341 kcal Electronic energy + Delta-G solvation = -21909.804320 eV Core-core repulsion = 18532.826223 eV Total energy + Delta-G solvation = -3376.978097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.62262 -41.29070 -39.10657 -36.60970 -35.91804 -34.44264 -34.38106 -32.27818 -30.77686 -29.66925 -27.73964 -26.16537 -24.87971 -23.91976 -23.53001 -22.31978 -20.69737 -19.15441 -18.78039 -18.75487 -17.92665 -17.53621 -16.57761 -16.49849 -16.15499 -15.78501 -15.51233 -15.23729 -15.09949 -14.54675 -14.45748 -14.20169 -14.17210 -13.66370 -13.38555 -13.03179 -12.87189 -12.65963 -12.41769 -12.30651 -12.24944 -12.15668 -11.88728 -11.77320 -11.53682 -11.48677 -11.15234 -10.75541 -9.95771 -9.07494 -8.26031 -6.29277 -0.22299 0.17167 0.76251 1.36974 1.38111 1.48198 1.54182 1.78615 2.36177 2.56138 2.95322 3.06536 3.18107 3.62806 3.95610 3.99003 4.04681 4.20494 4.23987 4.28631 4.39317 4.42625 4.57133 4.60756 4.81097 4.83640 4.93407 4.95132 4.98066 5.05678 5.15197 5.36781 5.53745 5.90265 6.08485 6.28798 6.61584 6.62657 6.77245 6.98692 7.34288 8.90207 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033954 B = 0.003794 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.452530 B = 7378.280616 C = 7905.908074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.111 5.111 3 N -0.057 5.057 4 N -0.265 5.265 5 C 0.124 3.876 6 C 0.612 3.388 7 O -0.547 6.547 8 N -0.583 5.583 9 C 0.127 3.873 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.171 3.829 13 C -0.515 4.515 14 H 0.044 0.956 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.041 3.959 22 C 0.086 3.914 23 N -0.261 5.261 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.080 0.920 31 H -0.015 1.015 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.025 0.975 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.494 4.279 5.302 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.027 5.027 3 N -0.049 5.049 4 N -0.139 5.139 5 C -0.160 4.160 6 C 0.395 3.605 7 O -0.422 6.422 8 N -0.315 5.315 9 C 0.006 3.994 10 C -0.073 4.073 11 N -0.264 5.264 12 C 0.044 3.956 13 C -0.553 4.553 14 H 0.062 0.938 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.769 3.231 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.088 4.088 22 C -0.037 4.037 23 N -0.116 5.116 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.002 0.998 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.117 0.883 36 H 0.163 0.837 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.569 4.259 5.749 28.482 hybrid contribution 0.536 -0.365 -1.487 1.622 sum -27.033 3.894 4.262 27.643 Atomic orbital electron populations 1.23307 0.64775 1.09613 1.08776 1.50815 1.12749 0.99394 1.39740 1.78889 0.96301 1.14532 1.15219 1.75673 1.10407 1.09578 1.18218 1.24953 0.93059 0.90361 1.07593 1.16354 0.81070 0.85365 0.77739 1.90806 1.85652 1.14481 1.51257 1.48051 1.04873 1.09474 1.69123 1.21945 0.83710 0.94989 0.98796 1.22361 0.99355 0.89863 0.95727 1.61844 1.12574 1.03870 1.48078 1.19953 0.91176 0.96116 0.88305 1.21253 0.94850 1.29001 1.10244 0.93811 1.25807 0.94579 0.97484 1.00948 1.70043 1.03343 1.46333 1.39055 0.85747 0.78979 0.79563 0.78820 1.18774 1.21021 1.17802 1.22546 0.89788 0.99747 0.96728 1.22971 1.04110 0.77847 0.98755 1.75067 1.02148 1.15516 1.18837 0.85190 0.84963 0.83683 0.89292 0.88445 0.95943 0.90166 0.99750 0.94654 0.92469 0.95712 0.88254 0.83697 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.62 127.77 1.49 1.62 16 2 N -0.11 -1.81 4.39 -206.58 -0.91 -2.71 16 3 N -0.06 -1.15 13.23 37.02 0.49 -0.66 16 4 N -0.27 -6.63 8.92 -52.37 -0.47 -7.09 16 5 C 0.12 3.43 7.89 137.15 1.08 4.51 16 6 C 0.61 19.58 7.72 86.83 0.67 20.25 16 7 O -0.55 -20.22 16.57 -3.84 -0.06 -20.28 16 8 N -0.58 -18.04 3.00 -820.26 -2.46 -20.51 16 9 C 0.13 4.14 6.62 86.50 0.57 4.71 16 10 C 0.06 2.15 5.47 86.54 0.47 2.62 16 11 N -0.54 -21.78 4.62 -898.89 -4.15 -25.93 16 12 C 0.17 8.07 3.79 85.55 0.32 8.39 16 13 C -0.52 -29.25 8.96 25.60 0.23 -29.02 16 14 H 0.04 2.75 7.37 -2.91 -0.02 2.73 16 15 C 0.01 0.53 5.47 84.66 0.46 1.00 16 16 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 17 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 21 C 0.04 1.30 5.62 86.38 0.49 1.79 16 22 C 0.09 2.40 6.46 86.35 0.56 2.96 16 23 N -0.26 -6.26 12.17 -52.32 -0.64 -6.89 16 24 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.10 3.09 7.08 -2.39 -0.02 3.07 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 3.48 6.67 -2.39 -0.02 3.46 16 31 H -0.02 -0.72 7.18 -2.38 -0.02 -0.74 16 32 H 0.04 1.61 7.40 -2.39 -0.02 1.59 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 2.89 7.99 -2.39 -0.02 2.87 16 36 H 0.15 3.76 3.81 -69.38 -0.26 3.49 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -75.89 307.51 1.11 -74.77 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 0.79 Total: 3.43 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.34 Total: 18.83 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -7.84 Total: -122.30 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -75.89 1.11 -74.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330801159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.436 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds