Wall clock time and date at job start Tue Mar 31 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47406 * 2 1 4 4 C 1.46494 * 120.00368 * 89.99990 * 3 2 1 5 5 C 1.50698 * 109.47487 * 89.99543 * 4 3 2 6 6 C 1.38219 * 120.00966 * 104.99793 * 5 4 3 7 7 C 1.38227 * 120.02402 * 179.72409 * 6 5 4 8 8 C 1.38263 * 120.05156 * 0.30685 * 7 6 5 9 9 C 1.38177 * 120.02526 * 359.97438 * 8 7 6 10 10 C 1.38439 * 120.01637 * 285.30499 * 5 4 3 11 11 F 1.35105 * 120.02463 * 359.97438 * 10 5 4 12 12 C 1.34777 * 119.99949 * 269.99936 * 3 2 1 13 13 O 1.21581 * 120.00157 * 180.02562 * 12 3 2 14 14 N 1.34781 * 119.99774 * 359.97438 * 12 3 2 15 15 C 1.46503 * 119.99697 * 180.02562 * 14 12 3 16 16 C 1.50702 * 109.47117 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99502 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00681 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99697 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47083 * 89.99980 * 20 18 16 22 22 H 1.48496 * 109.47283 * 209.99961 * 20 18 16 23 23 H 1.48503 * 109.47070 * 330.00270 * 20 18 16 24 24 H 1.08995 * 109.47538 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47000 * 300.00214 * 1 2 3 26 26 H 1.09003 * 109.46682 * 59.99986 * 1 2 3 27 27 H 1.09004 * 109.46942 * 239.99882 * 2 1 3 28 28 H 1.08998 * 109.46903 * 120.00430 * 2 1 3 29 29 H 1.09012 * 109.46843 * 329.99999 * 4 3 2 30 30 H 1.08992 * 109.47572 * 210.00165 * 4 3 2 31 31 H 1.08002 * 119.99072 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.97012 * 180.27779 * 7 6 5 33 33 H 1.08004 * 119.99046 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.01271 * 180.02562 * 9 8 7 35 35 H 0.96998 * 120.00451 * 0.02562 * 14 12 3 36 36 H 1.09001 * 109.47054 * 299.99948 * 15 14 12 37 37 H 1.08996 * 109.47329 * 59.99496 * 15 14 12 38 38 H 0.96992 * 120.00188 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 3.6858 1.8349 1.7038 6 6 4.6239 2.8422 1.5782 7 6 5.9281 2.6272 1.9825 8 6 6.2973 1.4024 2.5071 9 6 5.3626 0.3920 2.6282 10 6 4.0557 0.6063 2.2236 11 9 3.1409 -0.3809 2.3416 12 6 2.2431 2.0165 -1.1672 13 8 2.6488 3.1626 -1.1673 14 7 2.0189 1.3809 -2.3344 15 6 2.2636 2.0713 -3.6032 16 6 1.9370 1.1481 -4.7486 17 1 1.5830 0.1470 -4.5512 18 6 2.0902 1.5814 -6.0485 19 7 2.5208 2.8006 -6.2889 20 14 1.6861 0.4367 -7.4683 21 1 0.2588 0.5997 -7.8447 22 1 2.5460 0.7692 -8.6324 23 1 1.9320 -0.9687 -7.0565 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5817 1.6877 2.0284 30 1 2.0957 3.1410 1.1383 31 1 4.3367 3.7994 1.1684 32 1 6.6593 3.4163 1.8881 33 1 7.3167 1.2353 2.8223 34 1 5.6511 -0.5645 3.0384 35 1 1.6955 0.4664 -2.3345 36 1 1.6335 2.9588 -3.6613 37 1 3.3116 2.3655 -3.6605 38 1 2.6289 3.1052 -7.2034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339396420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:05 Heat of formation + Delta-G solvation = -69.403008 kcal Electronic energy + Delta-G solvation = -21940.525334 eV Core-core repulsion = 18503.699757 eV Total energy + Delta-G solvation = -3436.825576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.99086 -41.26984 -39.80520 -37.08794 -36.21230 -34.45641 -33.16407 -31.50978 -30.96307 -29.36335 -27.07044 -24.79757 -24.19381 -23.62509 -22.66042 -20.84998 -19.46452 -18.58660 -18.03408 -17.73007 -17.24541 -17.06831 -16.71703 -16.36670 -16.17396 -15.32280 -15.20298 -14.95511 -14.81915 -14.53655 -14.20538 -14.02761 -13.93954 -13.64617 -13.21029 -13.10679 -12.88310 -12.82060 -12.70497 -12.33495 -12.24303 -12.08201 -11.89102 -11.47450 -11.12706 -10.79988 -10.07178 -9.96074 -9.67558 -9.43072 -8.28436 -6.45082 0.13608 0.25737 1.42828 1.45778 1.56723 1.82257 2.22158 2.38320 2.68094 3.06346 3.21865 3.25487 3.68815 3.76656 4.01549 4.04109 4.21472 4.33457 4.37512 4.49161 4.54966 4.63619 4.86646 4.91113 4.93488 5.05546 5.11367 5.19329 5.26583 5.32564 5.39458 5.46550 5.49776 5.55498 5.72085 5.85121 5.95455 6.10921 6.65978 7.17491 7.25162 7.70000 8.83967 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.004316 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.339449 B = 6485.215948 C = 6985.642422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.620 5.620 4 C 0.173 3.827 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.136 4.136 8 C -0.086 4.086 9 C -0.159 4.159 10 C 0.094 3.906 11 F -0.136 7.136 12 C 0.692 3.308 13 O -0.639 6.639 14 N -0.724 5.724 15 C 0.288 3.712 16 C -0.555 4.555 17 H 0.080 0.920 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.985 3.015 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.257 1.257 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.400 0.600 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -8.342 20.167 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.034 4.034 3 N -0.357 5.357 4 C 0.050 3.950 5 C -0.154 4.154 6 C -0.106 4.106 7 C -0.154 4.154 8 C -0.104 4.104 9 C -0.177 4.177 10 C 0.075 3.925 11 F -0.115 7.115 12 C 0.394 3.606 13 O -0.522 6.522 14 N -0.379 5.379 15 C 0.164 3.836 16 C -0.593 4.593 17 H 0.098 0.902 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.808 3.192 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.180 1.180 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.237 0.763 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.020 -7.443 20.005 21.558 hybrid contribution -0.454 -0.364 -1.053 1.203 sum 2.566 -7.807 18.952 20.657 Atomic orbital electron populations 1.22158 0.94614 1.03489 1.01956 1.21998 0.95618 0.81268 1.04534 1.47222 1.69826 1.15173 1.03447 1.20157 0.91899 0.98646 0.84278 1.20429 0.98470 0.93953 1.02500 1.21181 0.93611 0.98870 0.96987 1.21547 0.95825 0.98984 0.99003 1.21421 1.00617 0.91667 0.96720 1.21450 0.91007 1.02285 1.02971 1.17689 0.87743 0.85041 1.02059 1.91347 1.65945 1.60427 1.93736 1.16281 0.78612 0.84279 0.81458 1.90799 1.55304 1.18978 1.87086 1.45479 1.70185 1.17533 1.04664 1.18385 0.93546 0.92024 0.79605 1.21560 1.46454 1.00298 0.90986 0.90207 1.26040 0.94163 0.97000 1.02145 1.70138 1.46000 1.18993 1.21699 0.85153 0.78244 0.78752 0.77026 1.19518 1.20796 1.18035 0.89090 0.91631 0.94273 0.91306 0.87263 0.87172 0.90259 0.86157 0.83438 0.81768 0.82422 0.76297 0.99689 0.99834 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.09 2.25 5.87 86.38 0.51 2.76 16 3 N -0.62 -20.47 2.46 -844.22 -2.07 -22.54 16 4 C 0.17 4.92 5.27 85.63 0.45 5.37 16 5 C -0.15 -4.13 5.47 -19.82 -0.11 -4.24 16 6 C -0.09 -2.39 9.67 22.26 0.22 -2.18 16 7 C -0.14 -2.88 10.04 22.27 0.22 -2.65 16 8 C -0.09 -1.50 10.04 22.26 0.22 -1.28 16 9 C -0.16 -3.03 10.03 22.31 0.22 -2.80 16 10 C 0.09 2.25 7.25 22.37 0.16 2.41 16 11 F -0.14 -3.08 13.80 44.97 0.62 -2.46 16 12 C 0.69 30.85 8.28 179.05 1.48 32.33 16 13 O -0.64 -33.68 15.92 -3.97 -0.06 -33.74 16 14 N -0.72 -33.51 5.41 -482.29 -2.61 -36.12 16 15 C 0.29 16.53 5.43 85.63 0.46 17.00 16 16 C -0.56 -31.13 9.28 25.60 0.24 -30.89 16 17 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -56.90 13.29 21.44 0.28 -56.61 16 20 Si 0.99 42.92 29.54 68.60 2.03 44.95 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.83 6.36 -2.38 -0.02 1.82 16 28 H 0.11 2.43 4.90 -2.39 -0.01 2.42 16 29 H 0.11 2.44 8.02 -2.38 -0.02 2.42 16 30 H 0.08 2.51 7.23 -2.39 -0.02 2.49 16 31 H 0.12 3.59 8.00 -2.91 -0.02 3.56 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.40 15.98 6.05 -92.71 -0.56 15.42 16 36 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.75 325.41 3.98 -69.77 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.51 Total: 23.00 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.28 Total: 13.75 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.40 Total: -115.27 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.06 Total: -33.74 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.62 Total: -2.46 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.75 3.98 -69.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339396420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.369 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds