Wall clock time and date at job start Tue Mar 31 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47207 * 2 1 4 4 C 1.50699 * 109.47614 * 240.00047 * 2 1 3 5 5 H 1.08002 * 119.99927 * 240.00549 * 4 2 1 6 6 C 1.37876 * 120.00253 * 59.99338 * 4 2 1 7 7 N 1.31513 * 119.99596 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00147 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47472 * 90.00052 * 8 6 4 10 10 H 1.48503 * 109.46938 * 210.00211 * 8 6 4 11 11 H 1.48497 * 109.47005 * 329.99895 * 8 6 4 12 12 C 1.50703 * 109.47123 * 119.99538 * 2 1 3 13 13 O 1.21286 * 119.99886 * 120.00558 * 12 2 1 14 14 N 1.34776 * 120.00130 * 300.00019 * 12 2 1 15 15 C 1.46498 * 119.99975 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47136 * 180.02562 * 15 14 12 17 17 C 1.38228 * 120.00852 * 260.25927 * 16 15 14 18 18 C 1.38229 * 120.02156 * 180.29817 * 17 16 15 19 19 C 1.38262 * 120.05298 * 359.71232 * 18 17 16 20 20 C 1.50698 * 119.98904 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.47571 * 269.98674 * 20 19 18 22 22 C 1.38177 * 120.02678 * 0.02562 * 19 18 17 23 23 C 1.38437 * 120.01912 * 79.99648 * 16 15 14 24 24 F 1.35104 * 120.02166 * 359.97438 * 23 16 15 25 25 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47297 * 299.99983 * 1 2 3 27 27 H 1.09005 * 109.47208 * 60.00766 * 1 2 3 28 28 H 0.97004 * 119.99879 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99756 * 0.02562 * 14 12 2 30 30 H 1.08996 * 109.47488 * 60.00374 * 15 14 12 31 31 H 1.09005 * 109.46680 * 299.99999 * 15 14 12 32 32 H 1.07993 * 119.98806 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.96987 * 179.70237 * 18 17 16 34 34 H 1.09006 * 109.46558 * 29.98516 * 20 19 18 35 35 H 1.08999 * 109.47067 * 149.97766 * 20 19 18 36 36 H 1.00896 * 110.99676 * 179.97438 * 21 20 19 37 37 H 1.00897 * 110.99556 * 303.95293 * 21 20 19 38 38 H 1.07996 * 120.01639 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3431 -2.1619 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9400 3.6508 16 6 1.6926 -0.2300 4.8812 17 6 2.5201 0.6427 5.5626 18 6 2.0612 1.2894 6.6948 19 6 0.7721 1.0689 7.1436 20 6 0.2730 1.7751 8.3777 21 7 0.5627 0.9556 9.5619 22 6 -0.0587 0.2011 6.4609 23 6 0.3999 -0.4472 5.3264 24 9 -0.4118 -1.2954 4.6579 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.7088 1.1611 -3.4844 29 1 1.1487 0.5386 2.5435 30 1 3.2855 -0.9395 3.6507 31 1 1.8325 -1.9678 3.6510 32 1 3.5274 0.8153 5.2133 33 1 2.7101 1.9674 7.2293 34 1 0.7731 2.7391 8.4719 35 1 -0.8029 1.9303 8.2974 36 1 0.2377 1.4081 10.4031 37 1 0.1636 0.0334 9.4698 38 1 -1.0657 0.0293 6.8114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340686062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:27 Heat of formation + Delta-G solvation = -69.222048 kcal Electronic energy + Delta-G solvation = -21207.149349 eV Core-core repulsion = 17770.331620 eV Total energy + Delta-G solvation = -3436.817729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.93008 -39.70770 -38.60423 -35.65934 -33.90931 -33.67457 -31.29745 -30.74282 -30.09140 -26.89268 -25.09059 -24.07035 -23.04768 -22.20228 -21.06745 -19.37473 -17.50016 -16.82072 -16.57549 -16.15946 -16.02237 -15.69742 -15.33066 -14.92550 -14.90722 -14.36202 -14.32262 -14.18760 -13.47765 -13.09052 -12.92441 -12.70055 -12.48883 -12.17142 -12.11353 -11.71663 -11.39411 -11.15009 -10.98317 -10.68558 -10.62697 -10.21939 -9.92927 -9.36028 -9.09976 -8.93615 -8.89349 -8.51577 -8.41536 -8.26395 -5.99599 -4.02511 0.85021 1.00829 3.24278 3.36484 3.41891 3.49241 3.77178 3.99401 4.12774 4.31104 4.39011 4.47742 4.51733 4.62478 4.85653 4.99381 5.10655 5.25662 5.33603 5.55144 5.56897 5.80153 5.90112 5.91129 6.20275 6.24077 6.31433 6.58461 6.67162 6.68891 6.88469 6.94549 6.97109 7.07368 7.52044 7.79803 8.02704 8.18487 8.48199 9.06584 9.27196 9.62848 11.08090 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.003280 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.161838 B = 8533.654705 C = 8628.721404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.546 6.546 14 N -0.742 5.742 15 C 0.161 3.839 16 C -0.131 4.131 17 C -0.073 4.073 18 C -0.111 4.111 19 C -0.058 4.058 20 C 0.101 3.899 21 N -0.846 5.846 22 C -0.153 4.153 23 C 0.116 3.884 24 F -0.131 7.131 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.396 0.604 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.344 0.656 37 H 0.343 0.657 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 4.049 22.916 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.422 6.422 14 N -0.396 5.396 15 C 0.037 3.963 16 C -0.132 4.132 17 C -0.092 4.092 18 C -0.130 4.130 19 C -0.059 4.059 20 C -0.029 4.029 21 N -0.376 5.376 22 C -0.173 4.173 23 C 0.097 3.903 24 F -0.109 7.109 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.230 0.770 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.722 3.490 22.447 22.782 hybrid contribution -1.273 -0.223 -0.704 1.472 sum -2.995 3.267 21.743 22.190 Atomic orbital electron populations 1.21738 0.96541 0.99848 1.00866 1.18869 0.94140 0.96816 0.89245 0.92999 1.21156 1.30892 1.12757 0.88998 0.90774 1.24954 0.95167 0.95071 0.99110 1.69877 1.37229 1.23116 1.23479 0.86448 0.79456 0.79232 0.82052 1.20686 1.21321 1.19746 1.22013 0.78392 0.84265 0.84302 1.90531 1.38068 1.26880 1.86688 1.46330 1.55609 1.32666 1.05036 1.19972 0.99251 0.95718 0.81354 1.20140 0.93194 1.00692 0.99202 1.21052 0.99828 0.94075 0.94236 1.21054 0.95148 1.00425 0.96327 1.19581 0.93945 0.96508 0.95884 1.20708 0.98295 0.96334 0.87567 1.58691 1.68254 1.06732 1.03961 1.20973 1.01143 0.99372 0.95773 1.17543 0.88508 0.91952 0.92333 1.91549 1.71925 1.68021 1.79434 0.94988 0.96986 0.88847 0.93004 0.77030 0.90720 0.91039 0.84569 0.85127 0.89683 0.94299 0.84255 0.84389 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.87 37.15 0.33 -2.81 16 2 C 0.03 0.77 2.64 -92.93 -0.25 0.53 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.47 8.37 -34.44 -0.29 -14.76 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 12.24 7.15 -10.98 -0.08 12.16 16 13 O -0.55 -14.61 15.46 5.55 0.09 -14.53 16 14 N -0.74 -13.59 5.44 -61.47 -0.33 -13.92 16 15 C 0.16 2.53 5.52 -5.20 -0.03 2.50 16 16 C -0.13 -1.67 5.25 -104.55 -0.55 -2.22 16 17 C -0.07 -0.77 9.67 -39.59 -0.38 -1.16 16 18 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 19 C -0.06 -0.52 5.39 -104.64 -0.56 -1.09 16 20 C 0.10 0.66 6.91 -4.98 -0.03 0.63 16 21 N -0.85 -5.17 9.61 -11.41 -0.11 -5.28 16 22 C -0.15 -1.55 9.68 -39.51 -0.38 -1.93 16 23 C 0.12 1.48 7.25 -39.42 -0.29 1.19 16 24 F -0.13 -1.94 16.66 2.25 0.04 -1.90 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.40 6.55 7.88 -40.82 -0.32 6.22 16 30 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 31 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 32 H 0.14 1.25 8.04 -52.49 -0.42 0.83 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 36 H 0.34 1.41 9.08 -39.29 -0.36 1.05 16 37 H 0.34 1.98 8.98 -39.29 -0.35 1.63 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -32.62 328.26 -7.77 -40.38 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.01 Total: 4.93 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.99 Total: -6.81 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.18 Total: -44.16 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.62 -7.77 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340686062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.838 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds