Wall clock time and date at job start Tue Mar 31 2020 02:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47146 * 2 1 4 4 C 1.50693 * 109.46936 * 120.00187 * 2 1 3 5 5 H 1.07999 * 120.00230 * 119.99630 * 4 2 1 6 6 C 1.37884 * 120.00072 * 299.99477 * 4 2 1 7 7 N 1.31511 * 119.99757 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00065 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46911 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47277 * 120.00132 * 8 6 4 11 11 H 1.48499 * 109.47135 * 240.00591 * 8 6 4 12 12 C 1.50700 * 109.46812 * 240.00242 * 2 1 3 13 13 O 1.21280 * 119.99610 * 239.99897 * 12 2 1 14 14 N 1.34774 * 120.00228 * 59.99810 * 12 2 1 15 15 C 1.46502 * 120.00148 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.47390 * 180.02562 * 15 14 12 17 17 C 1.38216 * 120.01502 * 259.98223 * 16 15 14 18 18 C 1.38226 * 120.02514 * 180.02562 * 17 16 15 19 19 C 1.38265 * 120.05319 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.98834 * 180.02562 * 19 18 17 21 21 N 1.46901 * 109.47349 * 89.99882 * 20 19 18 22 22 C 1.38176 * 120.02306 * 359.78900 * 19 18 17 23 23 C 1.38436 * 120.00925 * 79.99978 * 16 15 14 24 24 F 1.35104 * 120.02854 * 359.95937 * 23 16 15 25 25 H 1.09003 * 109.47053 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.47245 * 60.00002 * 1 2 3 27 27 H 1.08991 * 109.47645 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99606 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00037 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.46910 * 60.00192 * 15 14 12 31 31 H 1.09004 * 109.47118 * 300.00514 * 15 14 12 32 32 H 1.08002 * 119.98614 * 0.03902 * 17 16 15 33 33 H 1.08001 * 119.97063 * 179.97438 * 18 17 16 34 34 H 1.08999 * 109.47432 * 209.99549 * 20 19 18 35 35 H 1.09002 * 109.47437 * 330.00234 * 20 19 18 36 36 H 1.00906 * 110.99455 * 56.04279 * 21 20 19 37 37 H 1.00896 * 111.00751 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.01654 * 180.22962 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1483 -2.2857 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1677 -1.5867 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6964 -1.1192 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.6934 -0.2295 -4.8812 17 6 0.5991 -0.7227 -5.5664 18 6 0.1388 -0.0713 -6.6954 19 6 0.7721 1.0745 -7.1403 20 6 0.2687 1.7838 -8.3709 21 7 -0.7348 2.7842 -7.9835 22 6 1.8633 1.5721 -6.4541 23 6 2.3285 0.9174 -5.3259 24 9 3.3981 1.4007 -4.6567 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 0.7083 1.1609 3.4844 29 1 1.1493 0.5390 -2.5436 30 1 1.8324 -1.9680 -3.6510 31 1 3.2854 -0.9398 -3.6506 32 1 0.1032 -1.6173 -5.2195 33 1 -0.7161 -0.4577 -7.2304 34 1 1.1011 2.2790 -8.8709 35 1 -0.1833 1.0594 -9.0485 36 1 -0.3587 3.4298 -7.3053 37 1 -1.0884 3.2736 -8.7918 38 1 2.3555 2.4691 -6.7995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340686063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:30 Heat of formation + Delta-G solvation = -92.308628 kcal Electronic energy + Delta-G solvation = -21223.043575 eV Core-core repulsion = 17785.224736 eV Total energy + Delta-G solvation = -3437.818839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.96829 -40.83369 -40.11818 -36.63369 -35.77822 -35.05573 -32.80265 -31.78520 -31.38851 -27.96104 -27.18928 -25.11279 -23.99346 -23.75120 -21.96296 -21.16764 -18.54205 -18.27765 -17.96318 -17.65667 -17.08743 -16.65280 -16.57927 -16.42421 -16.02333 -15.87712 -15.45389 -15.08287 -14.71626 -14.63118 -14.36564 -14.04143 -13.65679 -13.35099 -13.12222 -13.07214 -12.97445 -12.68207 -12.59799 -12.47747 -12.20132 -12.04425 -11.97602 -11.04366 -10.68091 -10.42596 -10.05876 -9.98231 -9.68442 -9.54320 -8.15650 -6.26391 -0.00890 0.19455 1.39438 1.40966 1.54981 1.89218 2.25892 2.44926 2.75253 3.13627 3.18772 3.44873 3.64534 3.81712 3.93462 4.06976 4.26198 4.29109 4.49054 4.50925 4.64151 4.70170 4.74152 4.90533 4.94165 5.00794 5.04575 5.08141 5.33176 5.47442 5.48381 5.48797 5.73729 5.85823 5.93005 6.19645 6.19775 6.59499 6.68398 6.84005 7.38133 7.49540 8.90540 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.003424 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.455747 B = 8174.565658 C = 8392.262995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.586 6.586 14 N -0.721 5.721 15 C 0.163 3.837 16 C -0.145 4.145 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.051 4.051 20 C 0.103 3.897 21 N -0.855 5.855 22 C -0.150 4.150 23 C 0.093 3.907 24 F -0.151 7.151 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.345 0.655 37 H 0.357 0.643 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 4.222 -24.845 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.040 3.960 16 C -0.146 4.146 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.051 4.051 20 C -0.027 4.027 21 N -0.387 5.387 22 C -0.169 4.169 23 C 0.073 3.927 24 F -0.129 7.129 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.531 3.029 -24.364 24.966 hybrid contribution 1.291 0.748 0.875 1.729 sum -3.240 3.777 -23.489 24.010 Atomic orbital electron populations 1.21540 0.94820 0.99568 1.01636 1.18817 0.95544 0.95779 0.89581 0.94419 1.21317 1.31628 1.12741 0.91097 0.93310 1.25625 0.95169 0.95759 1.01488 1.69962 1.37209 1.23608 1.24290 0.85510 0.78382 0.78545 0.79245 1.20443 1.19987 1.19716 1.21586 0.78137 0.83706 0.85400 1.90503 1.39877 1.28699 1.87458 1.46065 1.54349 1.32492 1.04517 1.19996 0.98425 0.96038 0.81505 1.19885 0.99467 0.96771 0.98519 1.21220 0.93307 1.00134 0.94407 1.21371 1.00055 0.94953 0.96025 1.19940 0.93289 0.95142 0.96770 1.20749 0.94297 0.95244 0.92412 1.58677 1.39447 1.21586 1.19029 1.21175 0.99191 1.01718 0.94812 1.17849 0.86504 0.94803 0.93541 1.91496 1.53871 1.87547 1.80032 0.91005 0.93220 0.95542 0.92559 0.75783 0.90349 0.92750 0.83325 0.82667 0.93097 0.88439 0.84256 0.82880 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -31.59 8.37 25.60 0.21 -31.38 16 5 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 6 C 0.02 1.07 5.30 84.66 0.45 1.51 16 7 N -0.91 -52.16 11.32 21.45 0.24 -51.92 16 8 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.52 25.22 7.15 87.66 0.63 25.85 16 13 O -0.59 -32.51 15.46 -3.03 -0.05 -32.56 16 14 N -0.72 -26.65 5.44 -466.79 -2.54 -29.19 16 15 C 0.16 5.18 5.52 85.63 0.47 5.66 16 16 C -0.14 -3.57 5.25 -19.82 -0.10 -3.68 16 17 C -0.07 -1.37 9.67 22.26 0.22 -1.16 16 18 C -0.11 -1.60 9.70 22.27 0.22 -1.38 16 19 C -0.05 -0.75 5.39 -19.87 -0.11 -0.86 16 20 C 0.10 0.98 6.91 85.55 0.59 1.57 16 21 N -0.86 -8.50 9.61 -190.01 -1.83 -10.32 16 22 C -0.15 -2.72 9.68 22.31 0.22 -2.51 16 23 C 0.09 2.28 7.25 22.38 0.16 2.44 16 24 F -0.15 -4.50 16.66 44.97 0.75 -3.75 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 26 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.41 13.33 7.88 -92.71 -0.73 12.60 16 30 H 0.08 2.42 8.01 -2.39 -0.02 2.40 16 31 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 32 H 0.15 2.40 8.04 -2.91 -0.02 2.38 16 33 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.05 0.38 8.09 -2.39 -0.02 0.36 16 35 H 0.10 0.72 8.09 -2.39 -0.02 0.70 16 36 H 0.34 3.47 8.99 -89.69 -0.81 2.66 16 37 H 0.36 2.09 9.08 -89.70 -0.81 1.28 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -71.56 328.26 0.92 -70.64 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -1.24 Total: 16.85 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 3.56 Total: -7.58 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -4.12 Total: -91.43 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.75 Total: -3.75 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.56 0.92 -70.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340686063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.673 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds