Wall clock time and date at job start Tue Mar 31 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 120.00237 * 2 1 4 4 O 1.21275 * 120.00502 * 185.08106 * 3 2 1 5 5 C 1.50703 * 119.99577 * 5.07536 * 3 2 1 6 6 C 1.53000 * 109.47096 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47273 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47273 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47096 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99981 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99822 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00365 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99961 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47189 * 90.00351 * 13 11 9 15 15 H 1.48501 * 109.47405 * 210.00695 * 13 11 9 16 16 H 1.48500 * 109.46982 * 330.00174 * 13 11 9 17 17 C 1.39515 * 120.00382 * 179.97438 * 2 1 3 18 18 C 1.39016 * 119.66802 * 265.03723 * 17 2 1 19 19 C 1.38353 * 119.12829 * 180.02562 * 18 17 2 20 20 C 1.39017 * 118.47254 * 359.97438 * 19 18 17 21 21 F 1.35101 * 120.36877 * 180.02562 * 20 19 18 22 22 C 1.38277 * 119.26120 * 359.97438 * 20 19 18 23 23 N 1.31945 * 120.81665 * 0.03070 * 22 20 19 24 24 H 1.08995 * 109.46985 * 269.99856 * 1 2 3 25 25 H 1.08992 * 109.46772 * 30.00127 * 1 2 3 26 26 H 1.09001 * 109.46475 * 149.99935 * 1 2 3 27 27 H 1.08997 * 109.47710 * 300.00491 * 5 3 2 28 28 H 1.09004 * 109.47000 * 60.00146 * 5 3 2 29 29 H 1.09005 * 109.47182 * 300.00512 * 6 5 3 30 30 H 1.09000 * 109.46549 * 60.00447 * 6 5 3 31 31 H 1.08997 * 109.47458 * 300.00560 * 7 6 5 32 32 H 1.09004 * 109.47075 * 60.00106 * 7 6 5 33 33 H 1.08993 * 109.47616 * 300.00212 * 8 7 6 34 34 H 1.08997 * 109.46806 * 60.00714 * 8 7 6 35 35 H 0.96998 * 120.00620 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.43507 * 359.97438 * 18 17 2 37 37 H 1.08000 * 120.76686 * 179.97438 * 19 18 17 38 38 H 1.08006 * 119.59308 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3481 1.1693 -0.0930 5 6 1.3898 2.4697 0.1155 6 6 2.3831 3.6332 0.0914 7 6 1.6227 4.9555 0.2092 8 6 2.6160 6.1190 0.1845 9 6 1.8669 7.4216 0.3000 10 1 0.7901 7.4197 0.3831 11 6 2.5563 8.6156 0.3005 12 7 3.8676 8.6179 0.1998 13 14 1.6278 10.2301 0.4444 14 1 1.4891 10.5954 1.8769 15 1 2.3760 11.2967 -0.2683 16 1 0.2801 10.0818 -0.1614 17 6 2.1627 -1.2082 0.0005 18 6 2.5972 -1.7513 1.2042 19 6 3.2885 -2.9496 1.1917 20 6 3.5222 -3.5673 -0.0316 21 9 4.1928 -4.7387 -0.0883 22 6 3.0595 -2.9698 -1.1897 23 7 2.4032 -1.8261 -1.1445 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8899 -0.5138 26 1 -0.3632 -0.8900 -0.5139 27 1 0.6969 2.5658 -0.7204 28 1 0.8333 2.4870 1.0526 29 1 3.0758 3.5370 0.9275 30 1 2.9399 3.6161 -0.8455 31 1 0.9298 5.0520 -0.6266 32 1 1.0661 4.9723 1.1463 33 1 3.3092 6.0229 1.0201 34 1 3.1721 6.1021 -0.7528 35 1 4.3526 9.4579 0.1998 36 1 2.3985 -1.2439 2.1367 37 1 3.6387 -3.3951 2.1111 38 1 3.2377 -3.4452 -2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436258230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:50 Heat of formation + Delta-G solvation = -52.877410 kcal Electronic energy + Delta-G solvation = -20581.957898 eV Core-core repulsion = 17145.848925 eV Total energy + Delta-G solvation = -3436.108973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.38676 -41.10061 -39.35477 -35.84270 -34.94408 -32.98106 -32.67121 -30.91499 -29.46970 -27.07791 -25.90822 -24.39452 -23.81277 -22.12009 -20.11784 -19.72142 -18.12188 -17.84922 -17.62005 -16.85745 -16.17015 -16.11408 -15.83738 -15.16758 -14.56734 -14.47609 -14.28701 -13.98440 -13.77521 -13.49945 -13.25113 -13.04659 -12.74062 -12.56538 -12.22587 -11.68133 -11.61646 -10.99008 -10.55650 -10.51183 -10.42348 -10.41479 -10.32210 -9.97930 -9.61949 -9.37283 -9.23788 -9.12373 -8.98269 -8.30342 -5.95011 -3.97638 0.38099 0.64288 2.39919 2.52795 3.09602 3.34143 3.40268 3.43319 3.59801 4.07313 4.26352 4.40684 4.47367 4.50816 4.67883 4.85279 5.06204 5.11062 5.24464 5.29416 5.36697 5.38251 5.40269 5.42003 5.78200 5.88063 6.10870 6.25742 6.43733 6.54036 6.81926 6.93997 7.03300 7.20054 7.37018 7.74215 7.89952 8.03261 8.06491 8.47802 9.10146 9.66047 11.16341 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044985 B = 0.002504 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.275921 B =11177.391886 C =11483.090135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.580 5.580 3 C 0.522 3.478 4 O -0.518 6.518 5 C -0.132 4.132 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.019 3.981 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.346 3.654 18 C -0.124 4.124 19 C -0.100 4.100 20 C 0.047 3.953 21 F -0.128 7.128 22 C 0.091 3.909 23 N -0.457 5.457 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -26.391 1.609 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.315 5.315 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.172 4.172 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.018 4.018 9 C -0.558 4.558 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.120 3.880 18 C -0.146 4.146 19 C -0.127 4.127 20 C 0.025 3.975 21 F -0.107 7.107 22 C -0.069 4.069 23 N -0.167 5.167 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.439 -25.877 0.765 26.677 hybrid contribution -0.060 0.271 0.788 0.835 sum -6.499 -25.606 1.552 26.463 Atomic orbital electron populations 1.21910 0.77244 1.04151 1.02501 1.45444 1.07357 1.02786 1.75870 1.21378 0.88228 0.84726 0.74463 1.90738 1.14527 1.86789 1.46970 1.21845 1.00175 0.90955 1.04217 1.21500 0.97060 0.92695 1.03074 1.21642 0.99104 0.93857 1.00097 1.19098 0.94069 0.91263 0.97340 1.21278 0.93315 0.91295 1.49956 0.92732 1.25045 0.94841 0.99235 0.95472 1.69972 1.06277 1.26525 1.50710 0.86609 0.79861 0.83543 0.78062 1.20715 1.21264 1.19913 1.18186 0.93760 0.87847 0.88184 1.22052 0.97793 0.95224 0.99547 1.21597 0.97982 0.95266 0.97830 1.18811 0.98067 0.84782 0.95806 1.91538 1.77657 1.44303 1.97175 1.22718 0.95041 0.91296 0.97869 1.67386 1.12135 1.07586 1.29571 0.91702 0.89637 0.90916 0.88645 0.88612 0.91717 0.91704 0.93383 0.93388 0.96590 0.96569 0.93033 0.83385 0.82906 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.19 59.85 0.61 1.21 16 2 N -0.58 -6.64 2.98 -122.75 -0.37 -7.00 16 3 C 0.52 7.53 7.63 -10.98 -0.08 7.45 16 4 O -0.52 -9.76 15.96 5.56 0.09 -9.67 16 5 C -0.13 -1.71 4.37 -27.88 -0.12 -1.83 16 6 C -0.11 -1.85 4.50 -26.73 -0.12 -1.98 16 7 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 8 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 9 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.35 4.09 5.45 -154.63 -0.84 3.24 16 18 C -0.12 -1.17 10.02 -39.25 -0.39 -1.56 16 19 C -0.10 -0.80 10.15 -39.25 -0.40 -1.20 16 20 C 0.05 0.42 7.34 -39.28 -0.29 0.13 16 21 F -0.13 -1.13 17.28 2.25 0.04 -1.09 16 22 C 0.09 0.87 11.16 -17.49 -0.20 0.68 16 23 N -0.46 -5.59 10.39 -12.30 -0.13 -5.72 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.53 6.48 -51.93 -0.34 0.19 16 26 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 27 H 0.10 1.05 7.25 -51.93 -0.38 0.67 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -35.41 333.32 -7.47 -42.88 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -5.32 Total: -4.87 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.52 Total: -9.56 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.24 Total: -39.53 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.41 -7.47 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436258230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.999 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds