Wall clock time and date at job start Tue Mar 31 2020 02:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47200 * 70.11735 * 3 2 1 5 5 C 1.36937 * 120.00188 * 274.10100 * 4 3 2 6 6 H 1.08001 * 119.99802 * 323.41173 * 5 4 3 7 7 C 1.38805 * 120.00113 * 143.41338 * 5 4 3 8 8 N 1.31622 * 120.00461 * 346.11547 * 7 5 4 9 9 Si 1.86802 * 119.99883 * 166.11519 * 7 5 4 10 10 H 1.48496 * 109.47192 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46879 * 120.00243 * 9 7 5 12 12 H 1.48507 * 109.47068 * 239.99552 * 9 7 5 13 13 C 1.46504 * 119.99950 * 94.09646 * 4 3 2 14 14 H 1.08996 * 109.46719 * 186.16503 * 13 4 3 15 15 C 1.52998 * 109.47045 * 306.16489 * 13 4 3 16 16 C 1.50704 * 109.47082 * 66.16437 * 13 4 3 17 17 N 1.31265 * 120.05581 * 314.99915 * 16 13 4 18 18 C 1.32584 * 122.77581 * 179.97438 * 17 16 13 19 19 C 1.36208 * 121.87171 * 0.02562 * 18 17 16 20 20 C 1.40659 * 118.66851 * 359.97438 * 19 18 17 21 21 C 1.40226 * 122.22893 * 180.02562 * 20 19 18 22 22 C 1.36211 * 119.48122 * 179.97438 * 21 20 19 23 23 C 1.39379 * 121.02281 * 0.02562 * 22 21 20 24 24 C 1.36170 * 121.08855 * 0.02562 * 23 22 21 25 25 C 1.40381 * 119.51525 * 359.97438 * 24 23 22 26 26 H 4.40644 * 5.51383 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47714 * 310.11876 * 3 2 1 28 28 H 1.08995 * 109.47194 * 190.11684 * 3 2 1 29 29 H 0.97001 * 120.00731 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47477 * 299.99760 * 15 13 4 31 31 H 1.09004 * 109.47223 * 60.00107 * 15 13 4 32 32 H 1.09001 * 109.47057 * 179.97438 * 15 13 4 33 33 H 1.07999 * 119.06157 * 180.02562 * 18 17 16 34 34 H 1.08003 * 120.66198 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.26636 * 359.97438 * 21 20 19 36 36 H 1.08003 * 119.49492 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.45602 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.23815 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.4689 -1.2989 5 6 3.2834 -1.8103 -1.5303 6 1 3.6243 -2.4603 -0.7380 7 6 2.9962 -2.3346 -2.7830 8 7 2.3298 -1.6149 -3.6607 9 14 3.5555 -4.0617 -3.2233 10 1 4.2796 -4.6563 -2.0712 11 1 2.3718 -4.8976 -3.5481 12 1 4.4590 -4.0045 -4.4005 13 6 3.4637 0.4968 -2.3503 14 1 3.7024 -0.0358 -3.2709 15 6 2.2658 1.4179 -2.5900 16 6 4.6522 1.3191 -1.9230 17 7 4.7102 1.8077 -0.7061 18 6 5.7292 2.5371 -0.2733 19 6 6.7935 2.8308 -1.0710 20 6 6.8035 2.3418 -2.3899 21 6 7.8608 2.5984 -3.2746 22 6 7.8128 2.0965 -4.5400 23 6 6.7289 1.3325 -4.9691 24 6 5.6845 1.0644 -4.1375 25 6 5.6986 1.5647 -2.8260 26 1 -1.0500 0.0001 -0.0001 27 1 3.0097 -0.6613 0.7858 28 1 3.0088 1.0125 0.1805 29 1 2.1288 -1.9814 -4.5361 30 1 1.4062 0.8232 -2.8991 31 1 2.0271 1.9505 -1.6694 32 1 2.5109 2.1366 -3.3720 33 1 5.7151 2.9089 0.7406 34 1 7.6136 3.4265 -0.6981 35 1 8.7065 3.1892 -2.9553 36 1 8.6268 2.2944 -5.2217 37 1 6.7169 0.9474 -5.9780 38 1 4.8514 0.4711 -4.4846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462622308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:19 Heat of formation + Delta-G solvation = 121.085658 kcal Electronic energy + Delta-G solvation = -21651.936183 eV Core-core repulsion = 18654.140040 eV Total energy + Delta-G solvation = -2997.796143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76222 -38.67115 -37.70372 -34.48565 -34.20343 -32.57445 -32.08357 -31.10236 -29.94546 -27.88959 -25.74360 -24.71982 -24.37095 -23.40069 -21.19309 -19.27290 -18.88003 -18.35661 -18.10907 -16.97722 -16.68124 -15.91915 -15.69312 -15.50182 -15.26453 -14.92967 -14.71163 -14.47545 -14.36834 -13.68002 -13.61413 -13.38771 -13.05859 -12.85983 -12.77235 -12.66562 -12.56251 -12.31800 -12.12970 -11.98337 -11.47208 -10.97520 -10.89159 -10.81970 -10.56331 -10.01592 -9.92185 -8.82189 -8.63672 -7.90434 -5.46891 -0.44741 0.08592 1.08590 1.42975 1.46091 1.55516 2.12157 2.22942 2.26981 2.52424 3.18469 3.28543 3.56202 3.67885 3.77814 3.96878 4.00656 4.04831 4.19141 4.35338 4.41175 4.57318 4.61371 4.75883 4.83711 4.90339 4.94961 4.96019 5.03442 5.14633 5.23119 5.31585 5.38180 5.50720 5.56553 5.59716 5.64148 5.68127 5.94037 6.05391 6.44688 7.03930 7.14111 7.30067 7.78291 8.34797 9.13506 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.007645 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.294707 B = 3661.759481 C = 4868.189051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.193 4.193 3 C 0.228 3.772 4 N -0.571 5.571 5 C -0.277 4.277 6 H 0.054 0.946 7 C -0.025 4.025 8 N -0.910 5.910 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.227 3.773 14 H 0.100 0.900 15 C -0.122 4.122 16 C 0.160 3.840 17 N -0.507 5.507 18 C 0.062 3.938 19 C -0.168 4.168 20 C -0.041 4.041 21 C -0.117 4.117 22 C -0.096 4.096 23 C -0.126 4.126 24 C -0.105 4.105 25 C -0.130 4.130 26 H 0.234 0.766 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.254 0.746 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 10.214 -0.434 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.195 4.195 3 C 0.103 3.897 4 N -0.290 5.290 5 C -0.407 4.407 6 H 0.071 0.929 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.120 3.880 14 H 0.118 0.882 15 C -0.181 4.181 16 C 0.008 3.992 17 N -0.216 5.216 18 C -0.082 4.082 19 C -0.187 4.187 20 C -0.046 4.046 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.133 4.133 26 H 0.250 0.750 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.162 0.838 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.091 10.067 0.096 14.254 hybrid contribution 0.031 -1.124 -0.829 1.397 sum 10.122 8.943 -0.733 13.526 Atomic orbital electron populations 1.25400 0.96628 1.03398 1.02548 1.25557 0.97009 0.98304 0.98660 1.18484 0.81768 1.00848 0.88609 1.43844 1.72349 1.01786 1.10974 1.19361 1.38957 0.84878 0.97530 0.92872 1.25838 0.97353 1.00672 0.98401 1.70086 1.40157 1.38149 1.06857 0.85392 0.77515 0.80704 0.77939 1.19889 1.21665 1.20802 1.19340 0.88015 0.87594 0.93094 0.88237 1.21824 0.98991 0.98017 0.99245 1.23037 0.95680 0.91638 0.88884 1.67178 1.27680 1.10449 1.16288 1.22746 0.89608 0.94637 1.01174 1.22128 1.01039 1.02584 0.92995 1.18560 0.94193 0.96179 0.95715 1.21303 0.97822 1.00909 0.93459 1.21357 0.98129 0.95462 0.96553 1.21221 0.93634 0.98957 1.00607 1.21234 0.99667 0.98622 0.92931 1.19113 0.96486 1.01437 0.96229 0.74959 0.92916 0.87356 0.93613 0.93579 0.94296 0.93638 0.80893 0.81215 0.81884 0.82017 0.83809 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.94 19.25 74.32 1.43 -9.51 16 2 C -0.19 -9.02 12.46 31.12 0.39 -8.63 16 3 C 0.23 10.76 5.11 84.57 0.43 11.19 16 4 N -0.57 -29.60 2.32 -692.69 -1.61 -31.21 16 5 C -0.28 -15.55 9.51 84.03 0.80 -14.75 16 6 H 0.05 3.03 7.87 -2.91 -0.02 3.01 16 7 C -0.02 -1.35 4.95 84.86 0.42 -0.93 16 8 N -0.91 -51.12 11.18 21.65 0.24 -50.88 16 9 Si 0.96 44.51 29.58 68.60 2.03 46.54 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.23 10.93 1.98 44.25 0.09 11.02 16 14 H 0.10 5.23 3.58 -2.39 -0.01 5.22 16 15 C -0.12 -5.63 8.49 71.98 0.61 -5.02 16 16 C 0.16 6.84 5.80 43.17 0.25 7.09 16 17 N -0.51 -20.01 7.40 -183.63 -1.36 -21.37 16 18 C 0.06 1.89 11.07 84.11 0.93 2.82 16 19 C -0.17 -4.44 9.88 22.39 0.22 -4.22 16 20 C -0.04 -1.26 5.75 -21.29 -0.12 -1.38 16 21 C -0.12 -2.66 9.81 22.28 0.22 -2.44 16 22 C -0.10 -2.07 9.95 22.07 0.22 -1.85 16 23 C -0.13 -3.42 9.94 22.06 0.22 -3.21 16 24 C -0.10 -3.77 9.35 22.31 0.21 -3.56 16 25 C -0.13 -4.94 5.74 -21.32 -0.12 -5.06 16 26 H 0.23 7.56 7.80 -4.42 -0.03 7.53 16 27 H 0.05 2.46 8.07 -2.39 -0.02 2.44 16 28 H 0.11 4.84 5.44 -2.39 -0.01 4.83 16 29 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.05 2.36 8.00 -2.39 -0.02 2.34 16 31 H 0.04 1.75 7.00 -2.38 -0.02 1.73 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.11 4.62 6.16 -2.91 -0.02 4.60 16 Total: -1.00 -67.50 321.49 6.56 -60.94 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 1.06 Total: 24.41 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 6.19 Total: -28.44 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -2.72 Total: -103.45 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.50 6.56 -60.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462622308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.023 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds