Wall clock time and date at job start Tue Mar 31 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00230 * 2 1 4 4 C 1.52997 * 109.47542 * 270.00382 * 3 2 1 5 5 C 1.52992 * 109.47113 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47166 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00379 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99766 * 359.97438 * 7 6 5 9 9 C 1.38804 * 120.00291 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00168 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00281 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47093 * 59.99993 * 11 9 7 13 13 H 1.48497 * 109.47437 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47164 * 300.00174 * 11 9 7 15 15 C 1.34780 * 119.99666 * 180.02562 * 2 1 3 16 16 O 1.21571 * 119.99758 * 184.41671 * 15 2 1 17 17 C 1.47689 * 120.00177 * 4.42157 * 15 2 1 18 18 C 1.39666 * 120.16169 * 311.01243 * 17 15 2 19 19 C 1.37851 * 119.87284 * 179.97438 * 18 17 15 20 20 C 1.38468 * 120.22092 * 359.97438 * 19 18 17 21 21 C 1.38197 * 120.34066 * 0.02711 * 20 19 18 22 22 C 1.38322 * 120.11267 * 359.97320 * 21 20 19 23 23 F 1.35107 * 120.10531 * 180.02562 * 22 21 20 24 24 H 1.08991 * 109.47121 * 273.00168 * 1 2 3 25 25 H 1.09005 * 109.46964 * 33.00119 * 1 2 3 26 26 H 1.08998 * 109.47376 * 152.99709 * 1 2 3 27 27 H 1.09005 * 109.46711 * 30.00590 * 3 2 1 28 28 H 1.08999 * 109.46706 * 149.99504 * 3 2 1 29 29 H 1.09001 * 109.46819 * 299.99726 * 4 3 2 30 30 H 1.08998 * 109.47181 * 59.99448 * 4 3 2 31 31 H 1.09001 * 109.47066 * 299.99589 * 5 4 3 32 32 H 1.08998 * 109.47537 * 59.99679 * 5 4 3 33 33 H 0.97005 * 119.99955 * 359.97438 * 6 5 4 34 34 H 0.96998 * 120.00515 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.06202 * 0.25802 * 18 17 15 36 36 H 1.08003 * 119.89244 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.82863 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.93956 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2170 3.0357 -1.4423 6 7 3.4617 3.4585 -2.8235 7 6 4.1341 4.6249 -3.0737 8 1 4.4836 5.2334 -2.2528 9 6 4.3664 5.0251 -4.3824 10 7 3.9408 4.2833 -5.3829 11 14 5.2829 6.6166 -4.7237 12 1 6.6397 6.5447 -4.1243 13 1 5.3992 6.8161 -6.1906 14 1 4.5380 7.7545 -4.1273 15 6 2.1388 -1.1673 -0.0005 16 8 3.3518 -1.1689 0.0806 17 6 1.4036 -2.4443 -0.0997 18 6 0.3082 -2.6898 0.7313 19 6 -0.3740 -3.8836 0.6333 20 6 0.0228 -4.8397 -0.2864 21 6 1.1054 -4.6062 -1.1131 22 6 1.8000 -3.4132 -1.0266 23 9 2.8581 -3.1849 -1.8352 24 1 -0.3633 0.0538 1.0262 25 1 -0.3633 0.8619 -0.5598 26 1 -0.3634 -0.9156 -0.4666 27 1 1.6085 2.0283 0.5140 28 1 3.1499 1.1383 0.5139 29 1 3.0416 0.9509 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6275 3.7952 -0.9286 32 1 4.1694 2.9058 -0.9284 33 1 3.1474 2.9121 -3.5609 34 1 4.1028 4.5631 -6.2974 35 1 -0.0065 -1.9439 1.4461 36 1 -1.2208 -4.0740 1.2760 37 1 -0.5165 -5.7726 -0.3581 38 1 1.4090 -5.3562 -1.8283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483448552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:05 Heat of formation + Delta-G solvation = -38.033380 kcal Electronic energy + Delta-G solvation = -21168.066604 eV Core-core repulsion = 17732.601317 eV Total energy + Delta-G solvation = -3435.465287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.06449 -40.41568 -38.58162 -36.18060 -34.83024 -32.60662 -31.48361 -30.87531 -29.61109 -27.05657 -25.69195 -23.85683 -23.11423 -22.39934 -20.93044 -19.80423 -17.86771 -17.47044 -17.01045 -16.83296 -16.25001 -15.67522 -15.45833 -15.15286 -14.62781 -14.48625 -14.39137 -13.77098 -13.44436 -13.26500 -13.12022 -13.02036 -12.77245 -12.39852 -12.35315 -11.89706 -11.86684 -11.61631 -10.89701 -10.80069 -10.72238 -10.37073 -10.10015 -9.95367 -9.66923 -9.44112 -9.11027 -8.81420 -8.71027 -6.86523 -5.70613 -2.99466 0.49191 0.77619 2.50561 2.83992 3.25383 3.48267 3.51951 3.53580 3.87789 4.15112 4.35938 4.48797 4.64456 4.77758 4.84093 4.94589 5.13214 5.19088 5.34141 5.42215 5.51395 5.59622 5.61251 5.64509 5.71540 5.75361 5.90401 5.93364 6.10713 6.32920 6.39599 6.42673 6.51694 6.90286 6.92354 7.23697 7.74390 8.03507 8.48264 9.58850 10.17650 10.52332 11.52460 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.003156 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.538048 B = 8871.011878 C = 9287.680389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.607 5.607 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.556 3.444 16 O -0.518 6.518 17 C -0.162 4.162 18 C -0.062 4.062 19 C -0.139 4.139 20 C -0.072 4.072 21 C -0.160 4.160 22 C 0.149 3.851 23 F -0.121 7.121 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -19.095 14.261 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C -0.004 4.004 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.343 3.657 16 O -0.394 6.394 17 C -0.166 4.166 18 C -0.081 4.081 19 C -0.157 4.157 20 C -0.090 4.090 21 C -0.179 4.179 22 C 0.129 3.871 23 F -0.099 7.099 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.314 -18.899 14.293 27.179 hybrid contribution 0.478 0.735 -0.738 1.146 sum -12.836 -18.164 13.555 26.046 Atomic orbital electron populations 1.22030 0.79539 1.03904 1.01740 1.47778 1.07102 1.06061 1.73034 1.21548 0.97625 0.82980 0.98201 1.22067 1.01174 0.99080 0.95566 1.20532 0.96047 0.91779 0.88759 1.42351 1.68407 1.25911 1.01095 1.19208 1.27934 0.98104 0.91803 0.91188 1.24755 1.01753 0.99072 0.95557 1.69658 1.51605 1.38923 0.98169 0.86240 0.79710 0.83248 0.76830 1.21242 1.21686 1.21285 1.18103 0.87088 0.83332 0.77142 1.90850 1.13235 1.86950 1.48320 1.20051 0.99778 0.95962 1.00768 1.21298 0.92178 0.97630 0.96992 1.21160 1.01044 0.93632 0.99838 1.21193 0.94897 0.99319 0.93633 1.21175 0.97651 0.96407 1.02688 1.17713 0.85621 0.93815 0.89957 1.91606 1.53341 1.94673 1.70275 0.92315 0.90468 0.90645 0.90155 0.89478 0.91593 0.91917 0.96349 0.96166 0.78309 0.93489 0.84289 0.84672 0.84557 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.09 59.85 0.54 1.15 16 2 N -0.61 -7.82 2.87 -182.76 -0.53 -8.34 16 3 C 0.12 1.69 5.46 -4.04 -0.02 1.67 16 4 C -0.14 -2.49 5.65 -26.74 -0.15 -2.64 16 5 C 0.16 3.36 6.26 -4.04 -0.03 3.34 16 6 N -0.73 -19.87 5.60 -59.91 -0.34 -20.21 16 7 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 11 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C 0.56 8.40 7.01 -12.40 -0.09 8.31 16 16 O -0.52 -10.07 16.20 5.30 0.09 -9.98 16 17 C -0.16 -1.93 4.90 -104.91 -0.51 -2.44 16 18 C -0.06 -0.49 7.62 -39.19 -0.30 -0.79 16 19 C -0.14 -0.82 10.03 -39.64 -0.40 -1.22 16 20 C -0.07 -0.44 10.03 -39.51 -0.40 -0.84 16 21 C -0.16 -1.37 10.01 -39.57 -0.40 -1.77 16 22 C 0.15 1.84 7.26 -38.96 -0.28 1.56 16 23 F -0.12 -1.87 16.51 2.25 0.04 -1.84 16 24 H 0.06 0.35 7.55 -51.93 -0.39 -0.04 16 25 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.07 0.58 5.67 -51.93 -0.29 0.29 16 27 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.09 1.36 7.36 -51.93 -0.38 0.98 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.38 10.92 7.67 -40.82 -0.31 10.61 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.14 0.82 6.54 -52.49 -0.34 0.48 16 36 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -36.35 327.78 -7.44 -43.79 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.07 Total: 3.64 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.27 Total: -1.43 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.14 Total: -57.23 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.35 -7.44 -43.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483448552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.759 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds