Wall clock time and date at job start Tue Mar 31 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.36935 * 120.00135 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99865 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00104 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47118 * 90.00001 * 10 8 6 12 12 H 1.48497 * 109.47319 * 210.00026 * 10 8 6 13 13 H 1.48502 * 109.47135 * 330.00096 * 10 8 6 14 14 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 15 15 C 1.34777 * 120.00033 * 84.99600 * 14 2 1 16 16 O 1.21551 * 119.99902 * 0.02562 * 15 14 2 17 17 C 1.47846 * 120.00253 * 180.02562 * 15 14 2 18 18 C 1.39579 * 120.14048 * 359.72360 * 17 15 14 19 19 C 1.37957 * 119.84877 * 179.74598 * 18 17 15 20 20 C 1.38355 * 120.14833 * 0.53341 * 19 18 17 21 21 C 1.50697 * 119.85531 * 179.72226 * 20 19 18 22 22 F 1.39904 * 109.46836 * 270.01844 * 21 20 19 23 23 C 1.38368 * 120.28990 * 359.74101 * 20 19 18 24 24 C 1.37951 * 120.14417 * 359.97438 * 23 20 19 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00806 * 180.02562 * 9 8 6 32 32 H 0.96992 * 120.00062 * 265.00053 * 14 2 1 33 33 H 1.08003 * 120.07429 * 0.02562 * 18 17 15 34 34 H 1.07998 * 119.92392 * 180.27671 * 19 18 17 35 35 H 1.08992 * 109.47243 * 30.01894 * 21 20 19 36 36 H 1.09003 * 109.47319 * 150.02624 * 21 20 19 37 37 H 1.07997 * 119.92480 * 180.02562 * 23 20 19 38 38 H 1.07997 * 120.07633 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1840 -1.4380 2.2071 7 1 3.6469 -1.8431 3.0519 8 6 5.5674 -1.5371 2.1517 9 7 6.2220 -1.0429 1.1223 10 14 6.5002 -2.3720 3.5381 11 1 6.6329 -3.8214 3.2430 12 1 7.8505 -1.7663 3.6613 13 1 5.7589 -2.1921 4.8122 14 7 2.0184 -0.6906 -1.1962 15 6 2.1470 -0.0182 -2.3572 16 8 1.8583 1.1613 -2.4116 17 6 2.6393 -0.7151 -3.5646 18 6 2.9772 -2.0681 -3.5040 19 6 3.4310 -2.7137 -4.6355 20 6 3.5620 -2.0206 -5.8257 21 6 4.0643 -2.7309 -7.0562 22 9 5.4586 -2.6326 -7.1149 23 6 3.2342 -0.6779 -5.8911 24 6 2.7737 -0.0218 -4.7684 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.7517 -0.1584 2.1369 29 1 1.6055 -1.7198 1.2950 30 1 3.9825 -0.4622 0.4318 31 1 7.1887 -1.1125 1.0833 32 1 2.2491 -1.6316 -1.1527 33 1 2.8793 -2.6093 -2.5745 34 1 3.6885 -3.7616 -4.5911 35 1 3.7756 -3.7810 -7.0128 36 1 3.6300 -2.2711 -7.9440 37 1 3.3383 -0.1427 -6.8233 38 1 2.5177 1.0261 -4.8208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498198733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:34 Heat of formation + Delta-G solvation = -57.116955 kcal Electronic energy + Delta-G solvation = -21218.692816 eV Core-core repulsion = 17782.400003 eV Total energy + Delta-G solvation = -3436.292813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -47.81511 -40.13286 -38.49017 -36.15396 -33.70903 -32.71523 -31.41454 -30.83984 -29.86037 -26.95795 -25.68673 -23.11725 -22.81255 -22.42484 -20.79787 -20.05273 -18.01327 -17.05541 -16.57956 -16.27950 -16.03411 -15.76014 -15.02061 -14.84686 -14.54601 -14.43683 -13.96604 -13.65186 -13.56928 -13.31398 -13.01871 -12.61620 -12.35538 -12.23243 -12.07505 -11.61673 -11.51841 -11.26631 -11.07166 -10.91830 -10.85188 -10.47703 -10.07457 -9.76438 -9.69627 -9.10519 -9.07211 -8.94019 -8.69765 -6.98683 -5.79566 -3.10156 0.71258 1.27226 2.93198 3.40149 3.42406 3.46640 3.48669 3.85126 4.23758 4.43465 4.55382 4.64966 4.81716 4.84192 4.96185 5.23101 5.27360 5.38362 5.42512 5.47063 5.52653 5.63466 5.66336 5.85657 5.99040 6.06848 6.13271 6.18173 6.26817 6.29318 6.38204 6.44698 6.66945 6.72525 6.91376 7.66043 7.81578 8.37749 8.47179 9.49627 10.05225 10.40572 11.42542 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.004625 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.557260 B = 6052.173205 C = 7636.355965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.088 0.912 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.245 4.245 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.704 5.704 15 C 0.557 3.443 16 O -0.544 6.544 17 C -0.115 4.115 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.120 4.120 21 C 0.106 3.894 22 F -0.210 7.210 23 C -0.109 4.109 24 C -0.064 4.064 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.403 0.597 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -3.560 -14.996 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.106 0.894 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.376 4.376 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.355 5.355 15 C 0.344 3.656 16 O -0.423 6.423 17 C -0.119 4.119 18 C -0.100 4.100 19 C -0.122 4.122 20 C -0.121 4.121 21 C 0.051 3.949 22 F -0.191 7.191 23 C -0.127 4.127 24 C -0.083 4.083 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.239 0.761 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.148 0.852 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.198 -2.796 -14.835 18.218 hybrid contribution 1.033 -0.812 0.652 1.466 sum -9.165 -3.608 -14.183 17.268 Atomic orbital electron populations 1.22100 0.95368 1.01898 1.02221 1.21289 0.93429 0.98106 0.84394 0.89362 1.20990 0.86906 0.96965 0.93554 1.42372 0.99710 1.70330 1.25330 1.19212 0.89438 1.29714 0.99284 0.91111 1.24756 0.96436 1.01450 0.98058 1.69667 1.07321 1.50530 1.30262 0.86192 0.79436 0.78975 0.81565 1.21700 1.21751 1.20737 1.45926 1.65938 1.14426 1.09172 1.18207 0.77684 0.86465 0.83250 1.90736 1.50951 1.15419 1.85233 1.20130 1.02796 0.94372 0.94561 1.21409 0.96221 0.93584 0.98751 1.20984 0.99009 1.00366 0.91847 1.20400 1.00827 0.95036 0.95793 1.20821 0.76220 1.01477 0.96345 1.92833 1.30980 1.97735 1.97525 1.20990 0.99230 0.93580 0.98872 1.21260 0.95575 1.00475 0.90962 0.91539 0.92555 0.92401 0.94754 0.95779 0.77980 0.93418 0.76071 0.84876 0.85127 0.89758 0.89828 0.85243 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 2 C 0.13 2.24 2.73 -67.93 -0.19 2.05 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.78 5.82 -4.04 -0.02 2.76 16 5 N -0.73 -18.15 5.43 -59.91 -0.33 -18.47 16 6 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 N -0.70 -11.55 4.47 -54.75 -0.24 -11.80 16 15 C 0.56 9.60 7.74 -12.33 -0.10 9.50 16 16 O -0.54 -10.83 16.01 5.32 0.09 -10.75 16 17 C -0.12 -1.71 5.87 -104.97 -0.62 -2.32 16 18 C -0.08 -1.05 9.54 -39.18 -0.37 -1.43 16 19 C -0.10 -1.18 9.68 -39.64 -0.38 -1.56 16 20 C -0.12 -1.28 5.60 -104.53 -0.59 -1.87 16 21 C 0.11 0.87 7.67 36.00 0.28 1.15 16 22 F -0.21 -2.46 17.34 2.25 0.04 -2.43 16 23 C -0.11 -1.20 9.68 -39.64 -0.38 -1.58 16 24 C -0.06 -0.85 9.60 -39.19 -0.38 -1.22 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.39 10.29 7.33 -40.82 -0.30 9.99 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.40 6.20 6.64 -40.82 -0.27 5.93 16 33 H 0.13 1.61 6.41 -52.48 -0.34 1.27 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.80 7.65 -52.49 -0.40 1.40 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -33.11 330.83 -7.45 -40.56 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.05 Total: 11.68 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.64 Total: -3.61 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.15 Total: -57.63 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.11 -7.45 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498198733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.556 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds