Wall clock time and date at job start Tue Mar 31 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00608 * 0.02562 * 7 6 5 9 9 C 1.47728 * 119.99556 * 180.02562 * 7 6 5 10 10 C 1.39653 * 120.12043 * 359.72496 * 9 7 6 11 11 C 1.37831 * 119.87852 * 179.74239 * 10 9 7 12 12 C 1.38654 * 120.12058 * 0.51327 * 11 10 9 13 13 F 1.35100 * 119.88026 * 179.74257 * 12 11 10 14 14 C 1.38655 * 120.24036 * 359.76494 * 12 11 10 15 15 C 1.37834 * 120.11622 * 359.97438 * 14 12 11 16 16 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 17 17 C 1.36941 * 120.00103 * 84.99785 * 16 2 1 18 18 H 1.08000 * 119.99734 * 0.02562 * 17 16 2 19 19 C 1.38812 * 119.99814 * 180.02562 * 17 16 2 20 20 N 1.31621 * 119.99717 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00307 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46758 * 90.00255 * 21 19 17 23 23 H 1.48503 * 109.47378 * 210.00591 * 21 19 17 24 24 H 1.48501 * 109.47118 * 330.00515 * 21 19 17 25 25 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 26 26 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 28 28 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 29 29 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.05960 * 359.97438 * 10 9 7 34 34 H 1.07999 * 119.94241 * 180.25769 * 11 10 9 35 35 H 1.07998 * 119.94697 * 179.97438 * 14 12 11 36 36 H 1.08005 * 120.06305 * 179.97438 * 15 14 12 37 37 H 0.97003 * 120.00235 * 265.00555 * 16 2 1 38 38 H 0.97000 * 119.99526 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1603 -0.7993 2.0217 9 6 5.8664 -2.0364 3.9811 10 6 4.9650 -2.6533 4.8513 11 6 5.4303 -3.3063 5.9724 12 6 6.7898 -3.3424 6.2425 13 9 7.2401 -3.9794 7.3455 14 6 7.6887 -2.7266 5.3851 15 6 7.2347 -2.0754 4.2583 16 7 2.0183 -0.6905 -1.1963 17 6 2.1490 -0.0072 -2.3758 18 1 1.8925 1.0408 -2.4241 19 6 2.6112 -0.6616 -3.5094 20 7 2.7373 -0.0048 -4.6430 21 14 3.0555 -2.4741 -3.4258 22 1 1.8580 -3.2924 -3.7447 23 1 4.1305 -2.7661 -4.4077 24 1 3.5310 -2.8045 -2.0583 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7516 -1.7716 1.2053 29 1 1.6054 -0.2620 2.1368 30 1 3.8532 0.4368 1.3572 31 1 3.9994 -1.0729 0.4257 32 1 3.4258 -1.7353 3.1108 33 1 3.9055 -2.6219 4.6442 34 1 4.7344 -3.7872 6.6438 35 1 8.7466 -2.7573 5.6003 36 1 7.9356 -1.5957 3.5912 37 1 2.2489 -1.6317 -1.1529 38 1 3.0599 -0.4622 -5.4352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503043748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:08 Heat of formation + Delta-G solvation = -73.623947 kcal Electronic energy + Delta-G solvation = -20792.018426 eV Core-core repulsion = 17355.009816 eV Total energy + Delta-G solvation = -3437.008610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.02034 -41.26699 -39.25730 -38.22455 -35.98958 -34.24300 -32.44149 -32.07826 -31.32593 -29.50083 -25.79355 -24.99851 -24.14292 -23.39234 -21.92860 -21.32694 -19.74715 -19.16666 -18.37256 -17.63747 -17.06092 -16.71363 -16.57139 -16.35277 -16.00811 -15.81140 -15.22519 -15.07703 -14.62783 -14.60621 -14.32208 -14.23471 -13.80907 -13.68906 -13.57054 -13.25687 -12.90051 -12.60251 -12.29341 -12.23293 -12.07932 -12.05405 -11.77496 -11.61293 -11.12854 -10.96899 -10.25935 -10.23007 -9.80172 -9.28564 -8.00783 -5.32351 -0.41246 0.16245 1.35632 1.40050 1.46306 1.67109 2.06689 2.48922 2.66173 3.10122 3.31678 3.60027 3.64207 3.66194 3.83073 3.97193 4.14748 4.16393 4.23506 4.30477 4.65680 4.72574 4.76794 4.84934 4.85719 4.99534 5.01818 5.05169 5.09787 5.16001 5.22446 5.37541 5.39044 5.60790 5.71560 5.81531 6.24188 6.49313 7.11427 7.16143 7.88818 8.05845 9.21437 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003342 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.179861 B = 8376.761001 C = 8916.399567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.126 3.874 6 N -0.705 5.705 7 C 0.549 3.451 8 O -0.586 6.586 9 C -0.158 4.158 10 C -0.046 4.046 11 C -0.153 4.153 12 C 0.114 3.886 13 F -0.139 7.139 14 C -0.161 4.161 15 C -0.045 4.045 16 N -0.751 5.751 17 C -0.220 4.220 18 H 0.056 0.944 19 C -0.069 4.069 20 N -0.988 5.988 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.302 1.302 24 H -0.255 1.255 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.418 0.582 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.364 0.636 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -9.041 28.286 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.002 3.998 6 N -0.358 5.358 7 C 0.337 3.663 8 O -0.467 6.467 9 C -0.161 4.161 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.095 3.905 13 F -0.117 7.117 14 C -0.179 4.179 15 C -0.064 4.064 16 N -0.395 5.395 17 C -0.352 4.352 18 H 0.074 0.926 19 C -0.259 4.259 20 N -0.639 5.639 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.229 1.229 24 H -0.180 1.180 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.257 0.743 33 H 0.187 0.813 34 H 0.189 0.811 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.197 0.803 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.869 -8.492 27.667 29.083 hybrid contribution 0.458 -0.913 -0.612 1.191 sum 3.328 -9.406 27.055 28.836 Atomic orbital electron populations 1.22250 0.96609 1.01641 1.00948 1.20438 0.93375 0.95307 0.84946 0.94041 1.21976 0.92123 1.02716 0.98892 1.21233 0.95649 0.96511 0.86436 1.45776 1.06928 1.56227 1.26859 1.18691 0.82647 0.79549 0.85406 1.90804 1.56696 1.48060 1.51180 1.19976 0.95307 1.04286 0.96546 1.21460 1.00818 0.92627 0.91525 1.21398 0.93808 1.02297 0.99663 1.18189 0.93527 0.94625 0.84192 1.91524 1.89959 1.79421 1.50819 1.21274 1.01564 1.00265 0.94813 1.21191 0.94716 0.94891 0.95593 1.42865 1.79929 1.09577 1.07170 1.19034 1.34389 0.94381 0.87371 0.92581 1.25472 1.02753 1.02370 0.95346 1.69886 1.55207 1.37623 1.01197 0.85446 0.77601 0.81191 0.77738 1.20083 1.22949 1.18004 0.95386 0.92594 0.90301 0.89772 0.87013 0.92814 0.94091 0.74341 0.81306 0.81090 0.82420 0.84668 0.80286 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.49 71.98 0.68 -3.92 16 2 C 0.17 5.66 2.89 44.99 0.13 5.79 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.12 -2.77 4.87 30.59 0.15 -2.62 16 5 C 0.13 3.64 5.56 86.38 0.48 4.12 16 6 N -0.71 -15.43 5.51 -466.08 -2.57 -18.00 16 7 C 0.55 14.89 7.77 86.75 0.67 15.56 16 8 O -0.59 -22.25 16.34 -3.94 -0.06 -22.31 16 9 C -0.16 -3.10 5.87 -20.09 -0.12 -3.22 16 10 C -0.05 -0.54 9.54 22.52 0.21 -0.32 16 11 C -0.15 -1.63 10.01 22.27 0.22 -1.41 16 12 C 0.11 1.63 7.31 22.47 0.16 1.79 16 13 F -0.14 -2.14 17.26 44.97 0.78 -1.36 16 14 C -0.16 -2.44 10.01 22.27 0.22 -2.21 16 15 C -0.04 -0.87 9.59 22.52 0.22 -0.65 16 16 N -0.75 -33.67 4.38 -322.95 -1.41 -35.08 16 17 C -0.22 -12.54 10.41 84.03 0.87 -11.66 16 18 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.99 -64.76 13.97 21.65 0.30 -64.45 16 21 Si 0.95 46.59 27.73 68.60 1.90 48.50 16 22 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 24 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.53 7.75 -2.39 -0.02 1.52 16 32 H 0.42 5.19 6.50 -92.71 -0.60 4.59 16 33 H 0.17 0.80 6.40 -2.91 -0.02 0.79 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 2.89 7.65 -2.91 -0.02 2.86 16 37 H 0.36 15.74 5.66 -92.71 -0.52 15.22 16 38 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -78.61 328.12 3.22 -75.39 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.10 Total: 19.72 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 4.38 Total: -2.39 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.68 Total: -117.54 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.31 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.50 kcal Total: -78.61 3.22 -75.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503043748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.765 kcal (2) G-P(sol) polarization free energy of solvation -78.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds