Wall clock time and date at job start Tue Mar 31 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47592 * 2 1 4 4 C 1.46497 * 120.00090 * 270.00571 * 3 2 1 5 5 C 1.50706 * 109.47145 * 269.99405 * 4 3 2 6 6 H 1.08002 * 119.99387 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99991 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47034 * 60.00257 * 9 7 5 11 11 H 1.48507 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47464 * 299.99894 * 9 7 5 13 13 C 1.34777 * 119.99755 * 89.99728 * 3 2 1 14 14 O 1.21598 * 120.00027 * 179.97438 * 13 3 2 15 15 C 1.47436 * 119.99954 * 0.02562 * 13 3 2 16 16 C 1.39787 * 120.19513 * 269.99137 * 15 13 3 17 17 C 1.50704 * 120.01871 * 0.02562 * 16 15 13 18 18 C 1.37713 * 119.96420 * 180.02562 * 16 15 13 19 19 C 1.38634 * 120.36979 * 359.97438 * 18 16 15 20 20 C 1.38096 * 120.39582 * 0.30678 * 19 18 16 21 21 F 1.35103 * 119.98695 * 179.72287 * 20 19 18 22 22 C 1.39158 * 120.02700 * 359.43840 * 20 19 18 23 23 N 1.39022 * 120.18559 * 180.27701 * 22 20 19 24 24 H 1.09002 * 109.47034 * 299.99883 * 1 2 3 25 25 H 1.09000 * 109.47536 * 59.99389 * 1 2 3 26 26 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47034 * 240.00117 * 2 1 3 28 28 H 1.09000 * 109.47536 * 120.00611 * 2 1 3 29 29 H 1.08998 * 109.47287 * 29.99629 * 4 3 2 30 30 H 1.09006 * 109.47188 * 149.99888 * 4 3 2 31 31 H 0.97005 * 119.99701 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46919 * 270.01815 * 17 16 15 33 33 H 1.08995 * 109.47033 * 30.01483 * 17 16 15 34 34 H 1.08998 * 109.47058 * 150.01933 * 17 16 15 35 35 H 1.08004 * 119.81307 * 180.02562 * 18 16 15 36 36 H 1.08002 * 119.79807 * 180.02562 * 19 18 16 37 37 H 0.97002 * 120.00422 * 180.25844 * 23 22 20 38 38 H 0.97001 * 119.99781 * 0.25121 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9130 2.0955 -3.4176 10 1 6.1401 0.6387 -3.5949 11 1 6.1606 2.7957 -4.7036 12 1 6.8410 2.6188 -2.3831 13 6 2.2430 2.0164 1.1672 14 8 2.6489 3.1627 1.1673 15 6 1.9977 1.3212 2.4440 16 6 0.7415 1.3922 3.0532 17 6 -0.3673 2.1805 2.4049 18 6 0.5178 0.7414 4.2460 19 6 1.5324 0.0137 4.8485 20 6 2.7807 -0.0617 4.2629 21 9 3.7651 -0.7686 4.8601 22 6 3.0235 0.5851 3.0549 23 7 4.2773 0.5065 2.4596 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5817 1.6877 -2.0283 30 1 2.0956 3.1411 -1.1383 31 1 3.6749 3.5156 -4.4444 32 1 -0.3379 3.2100 2.7619 33 1 -0.2377 2.1674 1.3228 34 1 -1.3282 1.7343 2.6612 35 1 -0.4539 0.7976 4.7143 36 1 1.3466 -0.4934 5.7838 37 1 4.4447 0.9615 1.6194 38 1 4.9848 -0.0033 2.8844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543458015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:07 Heat of formation + Delta-G solvation = -61.221384 kcal Electronic energy + Delta-G solvation = -22662.222982 eV Core-core repulsion = 19225.752187 eV Total energy + Delta-G solvation = -3436.470795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.71898 -40.15856 -37.87553 -35.30138 -34.92065 -32.91791 -31.97555 -30.07214 -29.30040 -27.23037 -26.42452 -24.04757 -23.00291 -22.04328 -21.29008 -18.97836 -17.61756 -17.25174 -16.49578 -16.40768 -15.92906 -15.45812 -15.36156 -14.94935 -14.42908 -14.29510 -13.93652 -13.79957 -13.40838 -13.10518 -12.91745 -12.29309 -12.23828 -12.04603 -12.00504 -11.64103 -11.46086 -11.43011 -11.21516 -10.91985 -10.65967 -10.54954 -10.50655 -10.18007 -9.71561 -9.08776 -8.53224 -8.46015 -7.72614 -7.47332 -6.09103 -4.14471 1.14964 1.48223 3.22905 3.27813 3.32850 3.35503 3.58095 3.81599 3.94104 4.36711 4.46013 4.75456 4.87410 5.08505 5.25511 5.27751 5.38158 5.45427 5.67678 5.71563 5.76048 5.84362 5.87448 5.95352 6.12230 6.20396 6.26141 6.32130 6.54961 6.57249 6.82272 7.03706 7.38607 7.42128 7.50287 7.75000 7.86608 8.17216 8.35009 8.82184 9.00788 9.50711 10.98854 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.005838 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.824613 B = 4795.328521 C = 5532.302543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 N -0.587 5.587 4 C 0.245 3.755 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.556 3.444 14 O -0.532 6.532 15 C -0.170 4.170 16 C -0.012 4.012 17 C -0.128 4.128 18 C -0.161 4.161 19 C -0.092 4.092 20 C 0.000 4.000 21 F -0.146 7.146 22 C 0.229 3.771 23 N -0.859 5.859 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.412 0.588 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -8.316 13.384 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.341 3.659 14 O -0.409 6.409 15 C -0.179 4.179 16 C -0.013 4.013 17 C -0.184 4.184 18 C -0.181 4.181 19 C -0.112 4.112 20 C -0.024 4.024 21 F -0.125 7.125 22 C 0.119 3.881 23 N -0.397 5.397 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.244 0.756 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.323 -7.612 13.165 16.470 hybrid contribution 1.589 -0.418 -0.420 1.696 sum -4.734 -8.030 12.745 15.790 Atomic orbital electron populations 1.22431 0.96764 1.01734 1.02895 1.21371 0.93779 0.83945 1.02420 1.48309 1.62839 1.13314 1.07329 1.19318 0.96370 0.93687 0.78038 1.21337 0.96821 1.32109 1.06430 0.92677 1.24917 0.97790 0.94869 0.96363 1.69917 1.35707 1.33186 1.14296 0.86581 0.84781 0.78241 0.77935 1.20270 1.21123 1.20219 1.17860 0.78716 0.86169 0.83134 1.90798 1.45559 1.17499 1.87073 1.19366 0.93863 1.05400 0.99253 1.19667 0.92818 0.94975 0.93868 1.21053 0.95797 0.99804 1.01729 1.20478 0.99427 1.01772 0.96433 1.20894 0.91060 0.99201 0.99997 1.16920 0.87477 1.03602 0.94392 1.91420 1.60990 1.77009 1.83090 1.17569 0.86757 0.93137 0.90615 1.42395 1.10065 1.58895 1.28337 0.91707 0.92140 0.92286 0.90127 0.91828 0.94795 0.93791 0.92601 0.90387 0.90267 0.90946 0.85179 0.84928 0.75644 0.76926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.95 37.16 0.37 -2.12 16 2 C 0.11 1.81 5.95 -4.05 -0.02 1.79 16 3 N -0.59 -12.09 2.46 -176.33 -0.43 -12.52 16 4 C 0.24 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.56 11.59 4.32 -12.51 -0.05 11.53 16 14 O -0.53 -13.49 16.69 5.28 0.09 -13.40 16 15 C -0.17 -2.89 3.93 -104.81 -0.41 -3.31 16 16 C -0.01 -0.17 5.34 -104.23 -0.56 -0.72 16 17 C -0.13 -1.64 8.26 36.01 0.30 -1.34 16 18 C -0.16 -1.87 9.67 -39.63 -0.38 -2.25 16 19 C -0.09 -1.09 10.00 -39.49 -0.40 -1.48 16 20 C 0.00 0.00 7.30 -39.29 -0.29 -0.29 16 21 F -0.15 -2.02 16.63 2.25 0.04 -1.98 16 22 C 0.23 3.63 6.34 -83.50 -0.53 3.10 16 23 N -0.86 -13.17 8.99 32.60 0.29 -12.87 16 24 H 0.06 0.85 4.09 -51.93 -0.21 0.64 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.99 6.55 -51.93 -0.34 0.65 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.18 5.31 -51.93 -0.28 0.90 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.41 7.21 7.68 -40.82 -0.31 6.89 16 38 H 0.40 5.15 8.31 -40.82 -0.34 4.81 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -31.49 320.21 -6.68 -38.16 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.78 Total: 8.70 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.42 Total: -2.02 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.60 Total: -50.63 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.49 -6.68 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543458015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.057 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds