Wall clock time and date at job start Tue Mar 31 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.53001 * 109.47147 * 89.99619 * 3 2 1 5 5 N 1.46499 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99869 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00412 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99537 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99654 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00471 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47044 * 89.99779 * 10 8 6 12 12 H 1.48495 * 109.47259 * 209.99639 * 10 8 6 13 13 H 1.48499 * 109.46944 * 330.00182 * 10 8 6 14 14 C 1.34773 * 119.99969 * 179.71965 * 2 1 3 15 15 O 1.21283 * 120.00092 * 180.02562 * 14 2 1 16 16 C 1.50702 * 120.00430 * 0.02562 * 14 2 1 17 17 H 1.09002 * 109.46565 * 14.99485 * 16 14 2 18 18 F 1.39898 * 109.46954 * 255.00231 * 16 14 2 19 19 C 1.50697 * 109.47570 * 134.99569 * 16 14 2 20 20 C 1.38232 * 119.99863 * 64.72642 * 19 16 14 21 21 C 1.38235 * 120.00023 * 179.79051 * 20 19 16 22 22 C 1.38235 * 119.99593 * 0.43905 * 21 20 19 23 23 C 1.38231 * 120.00305 * 359.81289 * 22 21 20 24 24 C 1.38232 * 119.99923 * 245.00501 * 19 16 14 25 25 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 26 26 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 27 27 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 28 28 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 29 29 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 30 30 H 1.09003 * 109.47272 * 300.00321 * 4 3 2 31 31 H 1.08997 * 109.47273 * 60.00010 * 4 3 2 32 32 H 0.96996 * 120.00177 * 0.02562 * 5 4 3 33 33 H 0.97005 * 120.00001 * 180.02562 * 9 8 6 34 34 H 1.08007 * 120.00063 * 359.97438 * 20 19 16 35 35 H 1.08003 * 120.00331 * 180.27574 * 21 20 19 36 36 H 1.08004 * 119.99762 * 179.83479 * 22 21 20 37 37 H 1.08000 * 120.00124 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.99962 * 359.97435 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1844 2.9795 1.4425 6 6 3.5261 3.5728 2.6284 7 1 3.2564 3.1050 3.5637 8 6 4.2201 4.7750 2.6284 9 7 4.5490 5.3450 3.7682 10 14 4.6873 5.5838 1.0107 11 1 3.5985 6.4981 0.5818 12 1 5.9422 6.3576 1.1883 13 1 4.8924 4.5387 -0.0242 14 6 2.1389 -1.1672 0.0057 15 8 3.3517 -1.1672 0.0062 16 6 1.3855 -2.4723 0.0115 17 1 0.3442 -2.2918 -0.2556 18 9 1.4475 -3.0408 1.2883 19 6 2.0047 -3.4143 -0.9886 20 6 3.2967 -3.8690 -0.8018 21 6 3.8632 -4.7365 -1.7169 22 6 3.1408 -5.1422 -2.8234 23 6 1.8507 -4.6835 -3.0129 24 6 1.2827 -3.8192 -2.0956 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0284 -0.5138 30 1 1.5000 1.8408 1.9563 31 1 3.0415 0.9509 1.9564 32 1 3.4263 3.3998 0.6025 33 1 5.0337 6.1853 3.7682 34 1 3.8625 -3.5488 0.0607 35 1 4.8710 -5.0953 -1.5686 36 1 3.5843 -5.8179 -3.5398 37 1 1.2865 -5.0001 -3.8777 38 1 0.2748 -3.4608 -2.2437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567567078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:54 Heat of formation + Delta-G solvation = -54.746366 kcal Electronic energy + Delta-G solvation = -21392.254321 eV Core-core repulsion = 17956.064305 eV Total energy + Delta-G solvation = -3436.190017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.08970 -41.14883 -39.85814 -37.59954 -36.28426 -33.89050 -33.30859 -31.84735 -30.68740 -28.36432 -27.51878 -25.35920 -23.62396 -23.48316 -22.56608 -20.66846 -19.72752 -18.79447 -18.24252 -17.90182 -16.99999 -16.92102 -16.40975 -16.24841 -15.68951 -15.57042 -15.33576 -15.16185 -15.04696 -14.74212 -14.33632 -13.97743 -13.77791 -13.64028 -13.51982 -13.35749 -13.07854 -12.95336 -12.83843 -12.42141 -12.15362 -12.06629 -11.87609 -11.86420 -11.04819 -10.94863 -9.88730 -9.86782 -9.83542 -9.41153 -8.08346 -5.44960 0.20832 0.45292 1.22375 1.35654 1.40902 1.48000 1.71476 2.44899 2.76787 3.12678 3.22240 3.25252 3.51395 3.67915 3.92993 4.04359 4.09103 4.11969 4.17473 4.24971 4.27765 4.47168 4.55460 4.66623 4.68411 4.88989 4.91645 4.94354 4.98919 5.10238 5.33658 5.46029 5.53033 5.56091 5.67240 6.01669 6.14012 6.15248 6.85476 7.00024 7.72208 7.94303 9.13088 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.003527 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.944166 B = 7936.125328 C = 8171.249371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.600 5.600 3 C 0.116 3.884 4 C 0.148 3.852 5 N -0.754 5.754 6 C -0.246 4.246 7 H 0.050 0.950 8 C -0.062 4.062 9 N -0.983 5.983 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.294 1.294 13 H -0.254 1.254 14 C 0.483 3.517 15 O -0.559 6.559 16 C 0.129 3.871 17 H 0.158 0.842 18 F -0.198 7.198 19 C -0.148 4.148 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.093 4.093 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.037 0.963 31 H -0.002 1.002 32 H 0.369 0.631 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 -21.508 -19.065 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.332 5.332 3 C -0.008 4.008 4 C 0.020 3.980 5 N -0.400 5.400 6 C -0.376 4.376 7 H 0.068 0.932 8 C -0.254 4.254 9 N -0.632 5.632 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.179 1.179 14 C 0.269 3.731 15 O -0.436 6.436 16 C 0.091 3.909 17 H 0.175 0.825 18 F -0.178 7.178 19 C -0.149 4.149 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.111 4.111 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.203 0.797 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.168 0.832 37 H 0.177 0.823 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.847 -21.502 -18.798 31.317 hybrid contribution 1.047 0.855 0.341 1.395 sum -11.800 -20.646 -18.457 30.103 Atomic orbital electron populations 1.22385 0.75844 1.05314 1.04812 1.47914 1.09197 1.04570 1.71542 1.21509 0.98113 0.85267 0.95866 1.20959 0.94549 0.86122 0.96320 1.42480 1.69082 1.24242 1.04228 1.18978 1.29723 1.02882 0.86049 0.93175 1.25613 1.00529 0.98387 1.00858 1.69900 1.46099 1.20283 1.26952 0.85305 0.77742 0.78641 0.79468 1.19175 1.22021 1.17851 1.21457 0.88220 0.86730 0.76685 1.90729 1.15862 1.87537 1.49517 1.20592 1.03175 0.88093 0.79067 0.82494 1.92890 1.97925 1.85756 1.41275 1.19906 0.95929 1.00948 0.98084 1.21133 0.94911 0.96342 0.99475 1.21398 1.01035 0.98134 0.95226 1.21637 0.94981 0.99059 0.96891 1.21556 0.95598 0.97306 1.00004 1.21371 1.00835 0.96724 0.92183 0.88490 0.88986 0.89404 0.91468 0.86782 0.94517 0.98435 0.79685 0.93039 0.88136 0.84927 0.83181 0.82281 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.91 127.77 1.27 2.01 16 2 N -0.60 -14.92 2.87 -846.75 -2.43 -17.35 16 3 C 0.12 3.56 5.52 86.38 0.48 4.04 16 4 C 0.15 6.10 6.58 86.38 0.57 6.67 16 5 N -0.75 -37.21 5.41 -343.45 -1.86 -39.07 16 6 C -0.25 -14.79 10.47 84.03 0.88 -13.91 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 8 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 9 N -0.98 -64.64 13.97 21.65 0.30 -64.33 16 10 Si 0.96 46.11 27.74 68.60 1.90 48.02 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 14 C 0.48 14.21 7.00 87.66 0.61 14.82 16 15 O -0.56 -22.08 14.75 -3.04 -0.04 -22.12 16 16 C 0.13 2.81 3.40 29.10 0.10 2.91 16 17 H 0.16 1.78 5.59 -2.39 -0.01 1.77 16 18 F -0.20 -5.37 16.92 44.97 0.76 -4.61 16 19 C -0.15 -3.24 5.01 -19.87 -0.10 -3.34 16 20 C -0.10 -2.62 8.57 22.27 0.19 -2.43 16 21 C -0.14 -2.89 10.05 22.27 0.22 -2.66 16 22 C -0.11 -1.62 10.05 22.27 0.22 -1.40 16 23 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.09 -1.35 9.67 22.27 0.22 -1.14 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.86 6.21 -2.39 -0.01 0.85 16 27 H 0.09 1.15 8.07 -2.39 -0.02 1.13 16 28 H 0.07 2.35 7.43 -2.39 -0.02 2.33 16 29 H 0.11 2.77 8.07 -2.38 -0.02 2.75 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.37 16.89 5.53 -92.71 -0.51 16.38 16 33 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 34 H 0.10 3.17 7.38 -2.91 -0.02 3.15 16 35 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.16 1.08 7.95 -2.91 -0.02 1.05 16 Total: -1.00 -83.68 325.39 4.48 -79.20 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.50 Total: 19.39 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.35 Total: 0.87 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -3.99 Total: -120.75 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.76 Total: -4.61 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Total: -83.68 4.48 -79.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567567078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.456 kcal (2) G-P(sol) polarization free energy of solvation -83.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds