Wall clock time and date at job start Tue Mar 31 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.52992 * 109.47110 * 269.99838 * 3 2 1 5 5 N 1.46506 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00042 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99634 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47195 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47326 * 119.99798 * 10 8 6 13 13 H 1.48500 * 109.46992 * 239.99618 * 10 8 6 14 14 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 2 1 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 2 1 17 17 H 1.09005 * 109.46588 * 344.72588 * 16 14 2 18 18 F 1.39903 * 109.47204 * 104.72583 * 16 14 2 19 19 C 1.50696 * 109.47317 * 224.72752 * 16 14 2 20 20 C 1.38232 * 119.99910 * 294.72660 * 19 16 14 21 21 C 1.38242 * 120.00034 * 179.81146 * 20 19 16 22 22 C 1.38235 * 119.99635 * 0.39414 * 21 20 19 23 23 C 1.38228 * 120.00167 * 359.85408 * 22 21 20 24 24 C 1.38231 * 120.00235 * 359.95823 * 23 22 21 25 25 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 26 26 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 27 27 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 28 28 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 29 29 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 30 30 H 1.09003 * 109.47542 * 300.00121 * 4 3 2 31 31 H 1.09002 * 109.47212 * 60.00224 * 4 3 2 32 32 H 0.97002 * 119.99840 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99572 * 179.97438 * 9 8 6 34 34 H 1.08002 * 120.00255 * 359.97438 * 20 19 16 35 35 H 1.07993 * 119.99961 * 180.23050 * 21 20 19 36 36 H 1.07998 * 119.99805 * 179.84229 * 22 21 20 37 37 H 1.08007 * 120.00305 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.00253 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 7 3.1844 2.9795 -1.4424 6 6 3.5261 3.5728 -2.6283 7 1 3.2558 3.1054 -3.5636 8 6 4.2201 4.7750 -2.6283 9 7 4.5492 5.3449 -1.4883 10 14 4.6858 5.5848 -4.2459 11 1 4.2030 4.7493 -5.3747 12 1 4.0625 6.9303 -4.3235 13 1 6.1627 5.7181 -4.3256 14 6 2.1388 -1.1671 -0.0005 15 8 3.3516 -1.1672 -0.0055 16 6 1.3854 -2.4723 -0.0005 17 1 0.3452 -2.2913 0.2707 18 9 1.4421 -3.0436 -1.2764 19 6 2.0088 -3.4123 0.9989 20 6 3.2959 -3.8762 0.8018 21 6 3.8693 -4.7354 1.7205 22 6 3.1524 -5.1370 2.8322 23 6 1.8634 -4.6771 3.0266 24 6 1.2915 -3.8149 2.1099 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1498 1.1385 0.5139 30 1 3.0415 0.9508 -1.9563 31 1 1.5000 1.8408 -1.9563 32 1 3.4269 3.3996 -0.6023 33 1 5.0344 6.1848 -1.4883 34 1 3.8546 -3.5654 -0.0687 35 1 4.8762 -5.0949 1.5685 36 1 3.5994 -5.8102 3.5486 37 1 1.3032 -4.9912 3.8949 38 1 0.2842 -3.4559 2.2616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567567079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:01 Heat of formation + Delta-G solvation = -57.894702 kcal Electronic energy + Delta-G solvation = -21330.013923 eV Core-core repulsion = 17893.687384 eV Total energy + Delta-G solvation = -3436.326539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.08778 -41.13475 -39.85178 -37.50391 -36.19928 -33.79159 -33.14040 -31.84463 -30.33766 -28.33198 -27.44412 -25.57374 -23.65481 -23.55620 -22.51128 -20.59443 -19.31453 -18.75430 -18.24204 -17.86790 -17.00812 -16.90831 -16.48186 -16.05880 -15.77297 -15.45220 -15.30394 -15.15476 -15.01330 -14.70501 -14.33075 -13.97402 -13.77016 -13.57253 -13.42724 -13.12516 -13.03899 -12.90762 -12.77215 -12.41324 -12.12107 -12.06448 -11.90382 -11.87062 -11.03089 -10.93997 -9.88074 -9.86474 -9.82895 -9.10721 -8.01239 -5.32358 0.21104 0.45575 1.23489 1.44464 1.46445 1.56510 1.72285 2.52516 2.77345 3.14127 3.25399 3.32172 3.51331 3.93230 3.99119 4.06054 4.12210 4.13586 4.20908 4.25955 4.29022 4.50647 4.55733 4.66809 4.67954 4.88944 4.93081 4.94454 5.02309 5.10447 5.33983 5.44050 5.46311 5.53303 5.56253 6.02064 6.16789 6.20526 6.86940 7.26691 7.97074 8.23207 9.22237 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030136 B = 0.003290 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.903022 B = 8508.362928 C = 8717.006377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.121 3.879 4 C 0.148 3.852 5 N -0.742 5.742 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.292 1.292 14 C 0.483 3.517 15 O -0.561 6.561 16 C 0.131 3.869 17 H 0.158 0.842 18 F -0.197 7.197 19 C -0.149 4.149 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.094 4.094 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.060 0.940 30 H -0.005 1.005 31 H 0.033 0.967 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -21.625 10.949 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.332 5.332 3 C -0.002 4.002 4 C 0.020 3.980 5 N -0.386 5.386 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.806 3.194 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.269 3.731 15 O -0.438 6.438 16 C 0.092 3.908 17 H 0.175 0.825 18 F -0.177 7.177 19 C -0.149 4.149 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.112 4.112 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.013 0.987 31 H 0.051 0.949 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.842 -21.623 10.719 27.338 hybrid contribution 1.054 0.929 -0.984 1.715 sum -11.788 -20.694 9.735 25.729 Atomic orbital electron populations 1.22371 0.75895 1.05303 1.04732 1.47934 1.09182 1.04591 1.71490 1.21415 0.97575 0.84935 0.96316 1.20950 0.94431 0.86804 0.95821 1.42380 1.67677 1.22865 1.05667 1.19613 1.29260 1.02641 0.86896 0.91022 1.25631 1.01502 0.98768 1.00546 1.69822 1.45888 1.19917 1.26044 0.85012 0.77200 0.78128 0.79018 1.19232 1.21201 1.21920 1.21482 0.88221 0.86712 0.76726 1.90730 1.15940 1.87541 1.49594 1.20572 1.03094 0.87961 0.79133 0.82510 1.92888 1.97933 1.85617 1.41300 1.19916 0.96054 1.00879 0.98093 1.21130 0.94888 0.96343 0.99496 1.21401 1.00992 0.98236 0.95160 1.21637 0.94997 0.99041 0.96877 1.21557 0.95605 0.97307 0.99991 1.21374 1.00840 0.96743 0.92208 0.88686 0.89528 0.88742 0.87692 0.92131 0.98699 0.94906 0.79129 0.93698 0.88126 0.84878 0.83133 0.82256 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 9.90 127.77 1.26 2.13 16 2 N -0.60 -16.31 2.87 -846.77 -2.43 -18.74 16 3 C 0.12 4.19 5.52 86.38 0.48 4.67 16 4 C 0.15 6.46 6.58 86.38 0.57 7.03 16 5 N -0.74 -40.08 5.60 -343.45 -1.92 -42.00 16 6 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 7 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 8 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 9 N -0.97 -60.37 13.06 21.65 0.28 -60.08 16 10 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 14 C 0.48 15.03 7.01 87.66 0.61 15.64 16 15 O -0.56 -23.27 14.80 -3.04 -0.04 -23.31 16 16 C 0.13 2.98 3.40 29.10 0.10 3.08 16 17 H 0.16 1.94 5.61 -2.38 -0.01 1.93 16 18 F -0.20 -5.42 16.91 44.97 0.76 -4.66 16 19 C -0.15 -3.42 5.00 -19.87 -0.10 -3.52 16 20 C -0.10 -2.71 8.56 22.27 0.19 -2.52 16 21 C -0.14 -3.00 10.05 22.27 0.22 -2.78 16 22 C -0.11 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 24 C -0.09 -1.46 9.67 22.27 0.22 -1.24 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 27 H 0.09 0.99 6.23 -2.38 -0.01 0.98 16 28 H 0.10 3.13 8.07 -2.39 -0.02 3.11 16 29 H 0.06 2.42 7.43 -2.39 -0.02 2.41 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.38 21.12 7.67 -92.71 -0.71 20.41 16 33 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.10 3.25 7.43 -2.91 -0.02 3.23 16 35 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.16 1.24 7.95 -2.91 -0.02 1.22 16 Total: -1.00 -79.90 328.59 4.33 -75.57 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.36 Total: 22.15 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.31 Total: 1.70 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -4.07 Total: -120.83 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.76 Total: -4.66 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -79.90 4.33 -75.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567567079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.673 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds